MD15G1123700.v1.1

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0021145
Physical Location & Seq
Forward (+)
8944703 .. 8945495
793 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1123700.v1.1.491

Sequence Viewer

Length: 396 bp
ATGAGGCTCTTAGTCATGTCAATAGTGTTAAGCTTATTCTGCAGAGACGTAAGGCTAGTCTCTGGTGATATCGGCACTGCAACTTCCTACGGTCCTCCTTACATACCTACAAAGTGCTTTGGGAGTAGGCAAGACCAATTCCCTCCGGGGAACCTGTTTGTGGCGGTGAGTGAAGGATTGTGGGACAATGGTGCTGCGTGTGGAAGGCGATATAGACTGAGGTGCCTGAGTGGACGTAATAAACCCTGCAAGGGTGGTGCTACGGTGGACGTGAAGGTGGTTGATCTTTGCAAAAAATCACCTTGCCCTTCTACAGTAGCAATGTCAACTGATGCTTTTGCAGCGATCTCACACTCTCCTTCTACACGAATCAACGTCGAATATGTCCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

132

Amino Acids

14.16

Weight (kDa)

9.25

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 55 - 128 1.8e-10 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021145)

Species Orthologous Gene IDs
malus_domestica MD08G1147800.v1.1 MD15G1123700.v1.1
prunus_persica Prupe.1G479000_v2.0.a1
pyrus_communis pycom08g12460 pycom15g11140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 222
AciI CCGC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 160, 251
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 2 cut(s) 39, 64
ApeKI GCWGC 2 cut(s) 194, 341
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 77, 178, 291
AvaII GGWCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 181, 353
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 39, 64
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 2 cut(s) 40, 312
BisI GCNGC 2 cut(s) 195, 342
BlsI GCNGC 2 cut(s) 196, 343
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 152, 224
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 251
Bse3DI GCAATG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 160, 251
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 209, 218
BseXI GCAGC 2 cut(s) 181, 353
BshNI GGYRCC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 160, 251
BsmAI GTCTC 2 cut(s) 39, 64
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 283, 345
BspACI CCGC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 210, 219
BspLI GGNNCC 2 cut(s) 152, 224
BspMAI CTGCAG 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 283, 345
Bst4CI ACNGT 3 cut(s) 92, 265, 316
BstDEI CTNAG 3 cut(s) 10, 218, 227
BstKTI GATC 2 cut(s) 286, 348
BstMAI GTCTC 2 cut(s) 39, 64
BstMBI GATC 2 cut(s) 283, 345
BstMWI GCNNNNNNNGC 2 cut(s) 39, 341
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 2 cut(s) 40, 312
BstV1I GCAGC 2 cut(s) 181, 353
BtrI CACGTC 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 1 cut(s) 16
CviJI RGCY 3 cut(s) 7, 33, 55
CviKI_1 RGCY 3 cut(s) 7, 33, 55
DdeI CTNAG 3 cut(s) 10, 218, 227
DpnI GATC 2 cut(s) 285, 347
DpnII GATC 2 cut(s) 283, 345
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 1 cut(s) 19
FaiI YATR 5 cut(s) 17, 104, 213, 384, 394
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 195, 342
Fsp4HI GCNGC 2 cut(s) 195, 342
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 195, 342
HapII CCGG 1 cut(s) 146
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 1 cut(s) 369
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 77, 178, 291
Hpy166II GTNNAC 3 cut(s) 233, 268, 327
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 3 cut(s) 233, 268, 327
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 5 cut(s) 167, 198, 268, 318, 369
HpyCH4III ACNGT 3 cut(s) 92, 265, 316
HpyCH4IV ACGT 4 cut(s) 48, 235, 270, 375
HpyCH4V TGCA 5 cut(s) 42, 80, 249, 291, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 341
HpyF3I CTNAG 3 cut(s) 10, 218, 227
HpySE526I ACGT 4 cut(s) 48, 235, 270, 375
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 2 cut(s) 283, 345
LpnPI CCDG 5 cut(s) 48, 159, 167, 239, 259
Lsp1109I GCAGC 2 cut(s) 181, 353
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 56
MaeII ACGT 4 cut(s) 48, 235, 270, 375
MalI GATC 2 cut(s) 285, 347
MboI GATC 2 cut(s) 283, 345
MluCI AATT 1 cut(s) 137
MnlI CCTC 3 cut(s) 105, 153, 213
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 39, 341
NciI CCSGG 1 cut(s) 147
NdeII GATC 2 cut(s) 283, 345
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 2 cut(s) 152, 224
PfeI GAWTC 1 cut(s) 369
PkrI GCNGC 2 cut(s) 196, 343
PspN4I GGNNCC 2 cut(s) 152, 224
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 195, 342
Sau3AI GATC 2 cut(s) 283, 345
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 147
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 40, 312
SinI GGWCC 1 cut(s) 92
Sse9I AATT 1 cut(s) 137
SsiI CCGC 1 cut(s) 164
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 92, 265, 316
TaiI ACGT 4 cut(s) 51, 238, 273, 378
TaqI TCGA 1 cut(s) 378
TasI AATT 1 cut(s) 137
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 194, 341
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 92
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.