pycom15g11140

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0021145
Physical Location & Seq
Forward (+)
7503531 .. 7504314
784 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11140.3

Sequence Viewer

Length: 426 bp
ATGTATATGTTTTCTAACTTAGTTGTGAACATGAGGCTCGTAGCCATGTTAATAGTGTTAAGCTTATTCTGCAGAGACGTAAGGCTAGTCTCTGGTGATATCGGCACTGCAACTTCCTACGGTCCTCCTTACATACCTACAAAGTGCTTTGGGAGTAGGCAAGACCAGTTCCCTCCGGGGAACCTGTTTGTGGCGGTGAGTGAAGGATTGTGGGACAATGGTGCTGCGTGTGGAAGGCGATATAGACTGAGGTGCCTGAGTGGACGTAATAAACCCTGCAAGGGTGGTGCTACGGTGGACGTGAAGGTGGTTGATCTTTGCAACAAATCACCTTGCCCTTCTACCGTAGCAATGTCAGCTGATGCTTTTGCAGCGATCTCACACTCTCCTTCTACACGAATCAACGTCGAATATGTCCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

142

Amino Acids

15.3

Weight (kDa)

9.1

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021145)

Species Orthologous Gene IDs
malus_domestica MD08G1147800.v1.1 MD15G1123700.v1.1
prunus_persica Prupe.1G479000_v2.0.a1
pyrus_communis pycom08g12460 pycom15g11140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AciI CCGC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 190, 281
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 2 cut(s) 63, 359
AluI AGCT 2 cut(s) 63, 359
Alw26I GTCTC 2 cut(s) 69, 94
ApeKI GCWGC 2 cut(s) 224, 371
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 3 cut(s) 107, 208, 321
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 211, 383
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 69, 94
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 70
BisI GCNGC 2 cut(s) 225, 372
BlsI GCNGC 2 cut(s) 226, 373
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 182, 254
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 281
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 190, 281
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 239, 248
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 211, 383
BshNI GGYRCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 190, 281
BsmAI GTCTC 2 cut(s) 69, 94
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 313, 375
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 240, 249
BspLI GGNNCC 2 cut(s) 182, 254
BspMAI CTGCAG 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 2 cut(s) 313, 375
Bst4CI ACNGT 3 cut(s) 122, 295, 346
BstDEI CTNAG 3 cut(s) 19, 248, 257
BstKTI GATC 2 cut(s) 316, 378
BstMAI GTCTC 2 cut(s) 69, 94
BstMBI GATC 2 cut(s) 313, 375
BstMWI GCNNNNNNNGC 3 cut(s) 69, 356, 371
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 211, 383
BtrI CACGTC 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 2 cut(s) 31, 46
CviJI RGCY 5 cut(s) 37, 44, 63, 85, 359
CviKI_1 RGCY 5 cut(s) 37, 44, 63, 85, 359
DdeI CTNAG 3 cut(s) 19, 248, 257
DpnI GATC 2 cut(s) 315, 377
DpnII GATC 2 cut(s) 313, 375
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 122
EcoRV GATATC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 34, 49
FaiI YATR 8 cut(s) 6, 8, 32, 47, 134, 243, 414, 424
FaqI GGGAC 1 cut(s) 227
FatI CATG 2 cut(s) 30, 45
Fnu4HI GCNGC 2 cut(s) 225, 372
Fsp4HI GCNGC 2 cut(s) 225, 372
FspBI CTAG 1 cut(s) 86
GluI GCNGC 2 cut(s) 225, 372
HapII CCGG 1 cut(s) 176
Hin1II CATG 2 cut(s) 34, 49
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 399
HpaII CCGG 1 cut(s) 176
HphI GGTGA 3 cut(s) 107, 208, 321
Hpy166II GTNNAC 3 cut(s) 28, 263, 298
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 3 cut(s) 28, 263, 298
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 5 cut(s) 197, 228, 298, 348, 399
HpyCH4III ACNGT 3 cut(s) 122, 295, 346
HpyCH4IV ACGT 4 cut(s) 78, 265, 300, 405
HpyCH4V TGCA 5 cut(s) 72, 110, 279, 321, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 356, 371
HpyF3I CTNAG 3 cut(s) 19, 248, 257
HpySE526I ACGT 4 cut(s) 78, 265, 300, 405
Hsp92II CATG 2 cut(s) 34, 49
Kzo9I GATC 2 cut(s) 313, 375
LpnPI CCDG 6 cut(s) 78, 179, 189, 197, 269, 289
Lsp1109I GCAGC 2 cut(s) 211, 383
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 86
MaeII ACGT 4 cut(s) 78, 265, 300, 405
MalI GATC 2 cut(s) 315, 377
MboI GATC 2 cut(s) 313, 375
MnlI CCTC 4 cut(s) 27, 135, 183, 243
MseI TTAA 2 cut(s) 50, 59
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 69, 356, 371
NciI CCSGG 1 cut(s) 177
NdeII GATC 2 cut(s) 313, 375
NlaIII CATG 2 cut(s) 34, 49
NlaIV GGNNCC 2 cut(s) 182, 254
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 2 cut(s) 226, 373
PspN4I GGNNCC 2 cut(s) 182, 254
PspPI GGNCC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 50, 59
SatI GCNGC 2 cut(s) 225, 372
Sau3AI GATC 2 cut(s) 313, 375
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 177
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 122
SsiI CCGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 122, 295, 346
TaiI ACGT 4 cut(s) 81, 268, 303, 408
TaqI TCGA 1 cut(s) 408
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 2 cut(s) 50, 59
Tru9I TTAA 2 cut(s) 50, 59
TscAI CASTG 1 cut(s) 112
TseI GCWGC 2 cut(s) 224, 371
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 122
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.