Prupe.1G479000_v2.0.a1

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021145
Physical Location & Seq
Forward (+)
40061456 .. 40062514
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G479000.1

Sequence Viewer

Length: 396 bp
ATGAGGCTCCTAGTCTTGTCCATAGTGTTAAGCTTATTGTGCAGAGAAGCAAAGCTAGTTTTGGGTGATATCGGCACGGCAACTTCTTATCGTCCTCCTTATATACCTACAGGGTGCTTCGGAAACCAGCAAGACCAGTTCCCTCCAGGGAACCTGTTTGTGGCGGTGAGTGAAGGGTTATGGGACAATGGTGCCGCCTGTGGAAGGCGGTATAGACTGAGGTGCCTGAGTGGCCATAAAAAGCCTTGCAAGGGTGGTGCTACTGTGGACGTGAAGGTGGTGGATCTTTGCCGAAGATCACCTTGCCCTTCTACCATAGCCATGTCAACTGATGCTTTTGCAGCCATCTCACGTTCTCCTTCAACAAAAATCAATGTTGAATATATCCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

132

Amino Acids

14.19

Weight (kDa)

9.25

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021145)

Species Orthologous Gene IDs
malus_domestica MD08G1147800.v1.1 MD15G1123700.v1.1
prunus_persica Prupe.1G479000_v2.0.a1
pyrus_communis pycom08g12460 pycom15g11140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 191, 222
AciI CCGC 3 cut(s) 164, 195, 208
AclWI GGATC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 160, 204, 251
AgsI TTSAA 2 cut(s) 363, 380
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 33, 55
AluI AGCT 2 cut(s) 33, 55
AlwI GGATC 1 cut(s) 291
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 77, 178, 291
BalI TGGCCA 1 cut(s) 234
BanI GGYRCC 2 cut(s) 191, 222
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 147
BfaI CTAG 2 cut(s) 11, 56
BfmI CTRYAG 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 231
BisI GCNGC 2 cut(s) 195, 342
BlsI GCNGC 2 cut(s) 196, 343
Bme1390I CCNGG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 271
BmiI GGNNCC 4 cut(s) 8, 152, 193, 224
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 204, 251
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 3 cut(s) 160, 204, 251
BseMII CTCAG 2 cut(s) 209, 218
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 2 cut(s) 191, 222
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 160, 204, 251
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 283, 296
BspACI CCGC 3 cut(s) 164, 195, 208
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 210, 219
BspLI GGNNCC 4 cut(s) 8, 152, 193, 224
BspPI GGATC 1 cut(s) 291
BspT107I GGYRCC 2 cut(s) 191, 222
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 283, 296
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 218, 227
BstENI CCTNNNNNAGG 1 cut(s) 202
BstKTI GATC 2 cut(s) 286, 299
BstMBI GATC 2 cut(s) 283, 296
BstMWI GCNNNNNNNGC 3 cut(s) 39, 231, 341
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 234
BtrI CACGTC 1 cut(s) 271
CviAII CATG 1 cut(s) 322
CviJI RGCY 7 cut(s) 7, 33, 55, 234, 244, 320, 344
CviKI_1 RGCY 7 cut(s) 7, 33, 55, 234, 244, 320, 344
DdeI CTNAG 2 cut(s) 218, 227
DpnI GATC 2 cut(s) 285, 298
DpnII GATC 2 cut(s) 283, 296
EaeI YGGCCR 1 cut(s) 232
Eco32I GATATC 1 cut(s) 70
EcoNI CCTNNNNNAGG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 70
FaeI CATG 1 cut(s) 325
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 195, 342
Fsp4HI GCNGC 2 cut(s) 195, 342
FspBI CTAG 2 cut(s) 11, 56
GluI GCNGC 2 cut(s) 195, 342
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 234
Hin1II CATG 1 cut(s) 325
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 31
HphI GGTGA 3 cut(s) 77, 178, 291
Hpy166II GTNNAC 2 cut(s) 268, 327
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 2 cut(s) 268, 327
HpyAV CCTTC 5 cut(s) 167, 198, 268, 318, 369
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 2 cut(s) 270, 352
HpyCH4V TGCA 3 cut(s) 42, 249, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 231, 341
HpyF3I CTNAG 2 cut(s) 218, 227
HpySE526I ACGT 2 cut(s) 270, 352
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 2 cut(s) 283, 296
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 8 cut(s) 96, 132, 140, 149, 159, 167, 211, 239
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 11, 56
MaeII ACGT 2 cut(s) 270, 352
MalI GATC 2 cut(s) 285, 298
MboI GATC 2 cut(s) 283, 296
MboII GAAGA 1 cut(s) 306
MflI RGATCY 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 234
MnlI CCTC 3 cut(s) 105, 153, 213
Mox20I TGGCCA 1 cut(s) 234
MscI TGGCCA 1 cut(s) 234
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 39, 231, 341
NdeII GATC 2 cut(s) 283, 296
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 4 cut(s) 8, 152, 193, 224
PkrI GCNGC 2 cut(s) 196, 343
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 4 cut(s) 8, 152, 193, 224
PsuI RGATCY 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 195, 342
Sau3AI GATC 2 cut(s) 283, 296
ScrFI CCNGG 1 cut(s) 147
SetI ASST 9 cut(s) 35, 57, 109, 156, 224, 273, 279, 304, 355
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 320
SsiI CCGC 3 cut(s) 164, 195, 208
SspMI CTAG 2 cut(s) 11, 56
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 2 cut(s) 273, 355
TauI GCSGC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 1 cut(s) 341
XagI CCTNNNNNAGG 1 cut(s) 202
XspI CTAG 2 cut(s) 11, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.