Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0020388

Physical Location & Seq

Genomic Coordinates Reverse (-)

26075222 .. 26076747

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1201200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTACCGGTCGTATCTCTCTTCCGATTCCGTTGTGTATGCAAGTCATGGTGCGCCTTAATCACTACTCCCTAGTTTGTGGCCAAGCACCGAGCACATACCAACGACAAGAACAAGAATGTCCTGATTCTCACGAAACCGTACTAGCCGCCACCACCCCACTCTGTTTACACTTATATTGTAACCTTAACGATCAATACGTACGAAACTTCAGCCATTCGCTTTCTATTATTATGGCGGGTGATGGAGAATTGGCGATCTTGTCCTCCAACAACGACGATATAATCATTGAGATACTTTCATGGCTACCATTCGTATCTCTCCTTCGATTTCGTTGTGTATGCAAGGCATGGCGTGCCTTAATCACTACTCCCCAGTTCGTGGCCAAGCACCGAGCACATACCAACGACAACAACGAGAATGTCCTGATTCTCACGAAACCGTCCTGGCCGCCACCACCCTGGCCACAACCCCACTCTGTATCCCCCTTACTGATTTACTACCAATCACTGAAGAAGAATGTTGATGCCTGCGCCTCTGCCTCTTCATCAGCGATACGAAGCAACCATAGAGACATTGAAGCTGAAATTCCAGATGATACTAGCCTCAACAATTCATCACTTGTGGGTTCTTGCAATGGTCTCATCTGCCTACTACTTAACCCTCCACTTGAATACTATGAAGAATACTATGAAAATATAAGACTTCTCTTGTGGAACCTAGTACCAGAACAACCCGTAAGTTACCGGACATTGATTGGTTTTGTTTCAGACCATGTTATTACGGATTCGGCTATGATTCCACCACTCAAGACTACAAGGTCCTTTTGGGCGGTAAAAGTGCCAAAGATGGATTTGCTGCAATCTTCTCACTCAAAGCGGGTTCATGGAAGATTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

301

Amino Acids

33.85

Weight (kDa)

6.58

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	92 - 127	6.4e-11	F-box domain
F-box-like	PF12937	93 - 126	1.8e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020388)

Species	Orthologous Gene IDs
malus_domestica	MD08G1201200.v1.1
pyrus_communis	pycom01g23620 pycom08g17460 pycom08g17480 pycom08g20380 pycom08g20390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	5 cut(s)	150, 239, 452, 833, 880
AcoI	YGGCCR	4 cut(s)	82, 384, 449, 464
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	2 cut(s)	196, 533
AfaI	GTAC	3 cut(s)	144, 204, 726
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	581, 674
AjnI	CCWGG	2 cut(s)	446, 461
AluBI	AGCT	1 cut(s)	584
AluI	AGCT	1 cut(s)	584
Alw21I	GWGCWC	2 cut(s)	98, 400
Alw26I	GTCTC	2 cut(s)	567, 647
AoxI	GGCC	4 cut(s)	82, 384, 449, 464
ApeKI	GCWGC	1 cut(s)	859
ApoI	RAATTY	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	57, 536
AspS9I	GGNCC	1 cut(s)	822
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	822
BalI	TGGCCA	3 cut(s)	84, 386, 466
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
Bbv12I	GWGCWC	2 cut(s)	98, 400
BbvI	GCAGC	1 cut(s)	846
BccI	CCATC	2 cut(s)	239, 844
BciT130I	CCWGG	2 cut(s)	448, 463
BciVI	GTATCC	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	567, 647
BfaI	CTAG	4 cut(s)	74, 146, 603, 722
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	3 cut(s)	150, 452, 860
BlsI	GCNGC	3 cut(s)	151, 453, 861
Bme1390I	CCNGG	2 cut(s)	448, 463
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	822
BmiI	GGNNCC	1 cut(s)	719
BmrFI	CCNGG	2 cut(s)	448, 463
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	794
BsaAI	YACGTR	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	2 cut(s)	8, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	643
BseBI	CCWGG	2 cut(s)	448, 463
BseDI	CCNNGG	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	643
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	846
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	4 cut(s)	84, 386, 451, 466
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	98, 400
BsiSI	CCGG	2 cut(s)	9, 748
BsiWI	CGTACG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	567, 647
BsnI	GGCC	4 cut(s)	84, 386, 451, 466
Bso31I	GGTCTC	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	98, 400
Bsp143I	GATC	2 cut(s)	193, 258
BspACI	CCGC	5 cut(s)	150, 239, 452, 833, 880
BspANI	GGCC	4 cut(s)	84, 386, 451, 466
BspLI	GGNNCC	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	643
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	193, 258
Bst2UI	CCWGG	2 cut(s)	448, 463
Bst4CI	ACNGT	2 cut(s)	142, 444
Bst6I	CTCTTC	2 cut(s)	27, 550
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	357, 532
BstHHI	GCGC	2 cut(s)	57, 536
BstKTI	GATC	2 cut(s)	196, 261
BstMAI	GTCTC	2 cut(s)	567, 647
BstMBI	GATC	2 cut(s)	193, 258
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	2 cut(s)	448, 463
BstSCI	CCNGG	2 cut(s)	446, 461
BstSNI	TACGTA	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	846
BstXI	CCANNNNNNTGG	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	4 cut(s)	84, 386, 451, 466
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	357, 532
CfoI	GCGC	2 cut(s)	57, 536
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	822
Csp6I	GTAC	3 cut(s)	143, 203, 725
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	5 cut(s)	49, 303, 351, 776, 887
CviQI	GTAC	3 cut(s)	143, 203, 725
DpnI	GATC	2 cut(s)	195, 260
DpnII	GATC	2 cut(s)	193, 258
DrdI	GACNNNNNNGTC	1 cut(s)	820
DseDI	GACNNNNNNGTC	1 cut(s)	820
EaeI	YGGCCR	4 cut(s)	82, 384, 449, 464
Eam1104I	CTCTTC	2 cut(s)	27, 550
EarI	CTCTTC	2 cut(s)	27, 550
Eco105I	TACGTA	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	2 cut(s)	196, 533
EcoO109I	RGGNCCY	1 cut(s)	822
EcoRII	CCWGG	2 cut(s)	446, 461
FaeI	CATG	5 cut(s)	52, 306, 354, 779, 890
FatI	CATG	5 cut(s)	48, 302, 350, 775, 886
FauI	CCCGC	2 cut(s)	232, 873
Fnu4HI	GCNGC	3 cut(s)	150, 452, 860
Fsp4HI	GCNGC	3 cut(s)	150, 452, 860
FspBI	CTAG	4 cut(s)	74, 146, 603, 722
GlaI	GCGC	2 cut(s)	56, 535
GluI	GCNGC	3 cut(s)	150, 452, 860
HaeIII	GGCC	4 cut(s)	84, 386, 451, 466
HapII	CCGG	2 cut(s)	9, 748
HhaI	GCGC	2 cut(s)	57, 536
Hin1II	CATG	5 cut(s)	52, 306, 354, 779, 890
Hin6I	GCGC	2 cut(s)	55, 534
HinP1I	GCGC	2 cut(s)	55, 534
HinfI	GANTC	5 cut(s)	28, 128, 430, 788, 799
HpaII	CCGG	2 cut(s)	9, 748
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	27, 772
Hpy188III	TCNNGA	6 cut(s)	125, 134, 427, 436, 593, 811
Hpy8I	GTNNAC	1 cut(s)	170
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	142, 444
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	43, 345, 636, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	52, 306, 354, 779, 890
HspAI	GCGC	2 cut(s)	55, 534
Kzo9I	GATC	2 cut(s)	193, 258
Lsp1109I	GCAGC	1 cut(s)	846
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	4 cut(s)	74, 146, 603, 722
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	182, 743
MalI	GATC	2 cut(s)	195, 260
MboI	GATC	2 cut(s)	193, 258
MboII	GAAGA	7 cut(s)	14, 526, 529, 537, 695, 858, 903
MhlI	GDGCHC	2 cut(s)	98, 400
MlsI	TGGCCA	3 cut(s)	84, 386, 466
MluCI	AATT	3 cut(s)	251, 588, 613
MluNI	TGGCCA	3 cut(s)	84, 386, 466
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	277, 547, 553, 617, 675
Mox20I	TGGCCA	3 cut(s)	84, 386, 466
MscI	TGGCCA	3 cut(s)	84, 386, 466
MseI	TTAA	4 cut(s)	60, 189, 362, 660
Msp20I	TGGCCA	3 cut(s)	84, 386, 466
MspI	CCGG	2 cut(s)	9, 748
MspR9I	CCNGG	2 cut(s)	448, 463
MvaI	CCWGG	2 cut(s)	448, 463
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	193, 258
NlaIII	CATG	5 cut(s)	52, 306, 354, 779, 890
NlaIV	GGNNCC	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 414
PfeI	GAWTC	5 cut(s)	28, 128, 430, 788, 799
Pfl23II	CGTACG	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	151, 453, 861
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	446, 461
PspGI	CCWGG	2 cut(s)	446, 461
PspLI	CGTACG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	719
PspPI	GGNCC	1 cut(s)	822
PspPPI	RGGWCCY	1 cut(s)	822
RsaI	GTAC	3 cut(s)	144, 204, 726
RsaNI	GTAC	3 cut(s)	143, 203, 725
SaqAI	TTAA	4 cut(s)	60, 189, 362, 660
SatI	GCNGC	3 cut(s)	150, 452, 860
Sau3AI	GATC	2 cut(s)	193, 258
Sau96I	GGNCC	1 cut(s)	822
ScrFI	CCNGG	2 cut(s)	448, 463
SduI	GDGCHC	2 cut(s)	98, 400
SetI	ASST	5 cut(s)	189, 204, 586, 723, 824
SfaNI	GCATC	1 cut(s)	517
SinI	GGWCC	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
SnaBI	TACGTA	1 cut(s)	202
Sse9I	AATT	3 cut(s)	251, 588, 613
SsiI	CCGC	5 cut(s)	150, 239, 452, 833, 880
SspMI	CTAG	4 cut(s)	74, 146, 603, 722
StyD4I	CCNGG	2 cut(s)	446, 461
TaaI	ACNGT	2 cut(s)	142, 444
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	328
TasI	AATT	3 cut(s)	251, 588, 613
TauI	GCSGC	2 cut(s)	152, 454
TfiI	GAWTC	5 cut(s)	28, 128, 430, 788, 799
Tru1I	TTAA	4 cut(s)	60, 189, 362, 660
Tru9I	TTAA	4 cut(s)	60, 189, 362, 660
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	1 cut(s)	859
TspDTI	ATGAA	6 cut(s)	291, 537, 606, 696, 708, 875
TspGWI	ACGGA	2 cut(s)	21, 800
TspRI	CASTG	1 cut(s)	516
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	822
XapI	RAATTY	1 cut(s)	588
XspI	CTAG	4 cut(s)	74, 146, 603, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.