pycom08g20390

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
20203271 .. 20203620
350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20390.1

Sequence Viewer

Length: 309 bp
ATGTGGGTGATGATGGAATATGGGATTTTCCCTCCTAATGTGTGGTTGTTGAAGCCGACACTCCACGACGATGGTGCAGTTTTGATGCAATCGAGTCAAGGTGACTTGGTATCATATACACCTAAGGAAGATACATGCAGGATTGTGCTCGACAATTCTGATGATGAAGAATTGAGGGCTTCGGCTTCGGATGCAGAAACGGTTATGTACGTAGGCACTAATGTTTCACGGTGGCGGCTAGCTCATACATTTGATTTGAAACATCCCAAATGGTATCGTGAGCCTTGCCTTTCCTTAGCTCTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.77

Weight (kDa)

4.81

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020388)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 235
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 2 cut(s) 52, 259
AluBI AGCT 2 cut(s) 242, 299
AluI AGCT 2 cut(s) 242, 299
Alw21I GWGCWC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 19, 113
AsuNHI GCTAGC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 7, 65
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BfaI CTAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmsI GCATC 2 cut(s) 75, 181
BmtI GCTAGC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 295
BsaAI YACGTR 1 cut(s) 211
Bse21I CCTNAGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 196, 262
BsgI GTGCAG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 150
BspACI CCGC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 202, 231
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 123, 295
BstF5I GGATG 2 cut(s) 196, 262
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 138
BstSNI TACGTA 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 71
Bsu36I CCTNAGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 196, 262
Cac8I GCNNGC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 135
CviJI RGCY 7 cut(s) 55, 179, 185, 238, 242, 283, 299
CviKI_1 RGCY 7 cut(s) 55, 179, 185, 238, 242, 283, 299
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 123, 295
Eco105I TACGTA 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 123
FaeI CATG 1 cut(s) 138
FaiI YATR 6 cut(s) 21, 115, 117, 136, 206, 246
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 203, 249
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 138
HinfI GANTC 1 cut(s) 94
HphI GGTGA 2 cut(s) 19, 113
Hpy188I TCNGA 2 cut(s) 160, 190
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 202, 231
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 77, 88, 138, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 123, 295
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 138
LpnPI CCDG 1 cut(s) 124
LweI GCATC 2 cut(s) 75, 181
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 101
MboII GAAGA 2 cut(s) 140, 179
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 154, 170
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 2 cut(s) 42, 168
MseI TTAA 1 cut(s) 307
MslI CAYNNNNRTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 191
NheI GCTAGC 1 cut(s) 238
NlaIII CATG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 138
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Ppu21I YACGTR 1 cut(s) 211
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 307
SatI GCNGC 1 cut(s) 236
SchI GAGTC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 150
SetI ASST 5 cut(s) 103, 124, 213, 244, 301
SfaNI GCATC 2 cut(s) 75, 181
SmiMI CAYNNNNRTG 1 cut(s) 69
SnaBI TACGTA 1 cut(s) 211
Sse9I AATT 2 cut(s) 154, 170
SsiI CCGC 1 cut(s) 235
SspMI CTAG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 202, 231
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 92, 150
TasI AATT 2 cut(s) 154, 170
TauI GCSGC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 307
Tru9I TTAA 1 cut(s) 307
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 180
XceI RCATGY 1 cut(s) 138
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.