pycom08g17480

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0020388
Physical Location & Seq
Forward (+)
17666689 .. 17667921
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17480.2

Sequence Viewer

Length: 1092 bp
ATGGCGGGTGATGATGGAGAATTGCCGATCTTGTCCTCCAACAATGACGATATAATCGTCGAGATACTTTCATGGCTACCGGTCGTATCTCTCCTCCGATTCCGTTGTGTATGCAAGTCATGGCGCGCCTTAATCACTACTCCCCAGTTCGTGGCCAAGCACCGAGCACATACCAACGACAGCAACAAGAATGTCCTGATTCTCACGAAACCGTACTGGCCGCCACCAGCCCCCCTCAACGATTCATCACTTGTGGGTTCTTGCAATGGTCTCATCTGCCTACTACTTAACCCTCCACTTGCATACTATGAAGAATACTATGAAAATATAAGACTTCTCTTGTGGAACCCTAGTACCAGAACAGCCCGTAAGGTACCGGACATTGATTGGTTTTGTTTCACACCATGTTATTACGGATTCGGCTACGATTCCACCACTCAAGACTACAAGGTCCTTTTGGGCGGTATAAGTGCCAAAGATGGATTTGCTGCAATCTTCTCACTCAAAGCGGCTTCATGGAAGATTGTTGTAGACTCCCTCAAGCCTGCGGCCTCGTTTGGTATTGATGGACGAGGGTGCTTCTTAAATGGAGCTCTACATTGGAATCATAGACACGATAACGGGACAATAATCAGGTCCTTTGATTTCGCACAGGAGAAATTTCATTCGTTTTCCTCTATTAGGCATAACAAATGTTATTGGGCGCGAGTGGGGACTACTGGAAATCGTCTCTTCTTTCACACTTTCTGCCATGATTGCCAAAATTTTCCTGACTTTGAGGACACTGGCCTTACCCTATGGGTGATGATGGAATATGGGGTCGATCAATCTTGGACTATTTTTGCAAAAATTCGCCCGGAGATTTTCCCTCCTAATGTGTGGTTGTTGAATCCGTTATTCCTCGACGATGGTGCACTTTTGATGGAATCGGATCGAGGTGACTTGGTATTATATATGCCTAAGGAAGATACATGCAGGAATGTGCTCGACAATTCTGATGTTGAAAAATTGAGAGCTTCGTCTTCGTCTGGGCGTGCAGTAATGGTTATGTACGTAGGCACTTTGGTTTCACCGGCGACAGGTGGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

364

Amino Acids

40.9

Weight (kDa)

5.99

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020388)

Species Orthologous Gene IDs
malus_domestica MD08G1201200.v1.1
pyrus_communis pycom01g23620 pycom08g17460 pycom08g17480 pycom08g20380 pycom08g20390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 531
AccII CGCG 2 cut(s) 126, 706
AciI CCGC 6 cut(s) 5, 221, 462, 509, 548, 1086
AclWI GGATC 1 cut(s) 939
AcoI YGGCCR 2 cut(s) 153, 218
AcsI RAATTY 3 cut(s) 659, 763, 849
AfaI GTAC 4 cut(s) 215, 355, 375, 1052
AfiI CCNNNNNNNGG 3 cut(s) 151, 681, 1079
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 889, 1004
AluBI AGCT 2 cut(s) 593, 1016
AluI AGCT 2 cut(s) 593, 1016
Alw21I GWGCWC 4 cut(s) 169, 595, 916, 987
Alw26I GTCTC 2 cut(s) 275, 734
Alw44I GTGCAC 1 cut(s) 912
AlwI GGATC 1 cut(s) 939
AoxI GGCC 4 cut(s) 153, 218, 549, 787
ApaLI GTGCAC 1 cut(s) 912
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 3 cut(s) 659, 763, 849
AscI GGCGCGCC 1 cut(s) 124
AsiGI ACCGGT 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 373
AspLEI GCGC 3 cut(s) 126, 128, 706
AspS9I GGNCC 2 cut(s) 451, 636
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 4 cut(s) 20, 814, 950, 1062
AvaII GGWCC 2 cut(s) 451, 636
AxyI CCTNAGG 1 cut(s) 960
BaeGI GKGCMC 1 cut(s) 916
BaeI ACNNNNGTAYC 2 cut(s) 337, 370
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 1014
Bbv12I GWGCWC 4 cut(s) 169, 595, 916, 987
BbvI GCAGC 1 cut(s) 475
BccI CCATC 6 cut(s) 8, 473, 560, 802, 902, 916
BcgI CGANNNNNNTGC 2 cut(s) 893, 927
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 275, 734
BfaI CTAG 2 cut(s) 351, 1090
BisI GCNGC 5 cut(s) 221, 489, 510, 549, 1087
BlsI GCNGC 5 cut(s) 222, 490, 511, 550, 1088
Bme1390I CCNGG 1 cut(s) 857
Bme18I GGWCC 2 cut(s) 451, 636
BmgT120I GGNCC 2 cut(s) 451, 636
BmiI GGNNCC 2 cut(s) 347, 375
BmrFI CCNGG 1 cut(s) 857
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 1014
BpuEI CTTGAG 2 cut(s) 423, 524
BpuMI CCSGG 1 cut(s) 857
BsaAI YACGTR 1 cut(s) 1054
BsaI GGTCTC 1 cut(s) 275
BsaWI WCCGGW 2 cut(s) 79, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 681, 1079
Bse118I RCCGGY 2 cut(s) 79, 1072
Bse1I ACTGG 4 cut(s) 145, 221, 724, 790
Bse21I CCTNAGG 1 cut(s) 960
Bse3DI GCAATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 151, 681, 1079
BseMI GCAATG 1 cut(s) 271
BseNI ACTGG 4 cut(s) 145, 221, 724, 790
BsePI GCGCGC 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 1056
Bsh1236I CGCG 2 cut(s) 126, 706
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 4 cut(s) 155, 220, 551, 789
BshNI GGYRCC 1 cut(s) 373
BshTI ACCGGT 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 4 cut(s) 169, 595, 916, 987
BsiSI CCGG 4 cut(s) 80, 377, 857, 1073
BslFI GGGAC 2 cut(s) 637, 727
BslI CCNNNNNNNGG 3 cut(s) 151, 681, 1079
BsmAI GTCTC 2 cut(s) 275, 734
BsmBI CGTCTC 1 cut(s) 734
BsmFI GGGAC 2 cut(s) 637, 727
BsnI GGCC 4 cut(s) 155, 220, 551, 789
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 4 cut(s) 169, 595, 916, 987
Bsp143I GATC 3 cut(s) 27, 823, 931
BspACI CCGC 6 cut(s) 5, 221, 462, 509, 548, 1086
BspANI GGCC 4 cut(s) 155, 220, 551, 789
BspFNI CGCG 2 cut(s) 126, 706
BspLI GGNNCC 2 cut(s) 347, 375
BspPI GGATC 1 cut(s) 939
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 79, 1072
BsrI ACTGG 4 cut(s) 145, 221, 724, 790
BssAI RCCGGY 2 cut(s) 79, 1072
BssHII GCGCGC 1 cut(s) 124
BssMI GATC 3 cut(s) 27, 823, 931
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 737
BstBAI YACGTR 1 cut(s) 1054
BstC8I GCNNGC 3 cut(s) 126, 546, 1035
BstDEI CTNAG 1 cut(s) 960
BstENI CCTNNNNNAGG 1 cut(s) 679
BstFNI CGCG 2 cut(s) 126, 706
BstHHI GCGC 3 cut(s) 126, 128, 706
BstKTI GATC 3 cut(s) 30, 826, 934
BstMAI GTCTC 2 cut(s) 275, 734
BstMBI GATC 3 cut(s) 27, 823, 931
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 975
BstSCI CCNGG 1 cut(s) 855
BstSLI GKGCMC 1 cut(s) 916
BstSNI TACGTA 1 cut(s) 1054
BstUI CGCG 2 cut(s) 126, 706
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 1014
Bsu36I CCTNAGG 1 cut(s) 960
BsuRI GGCC 4 cut(s) 155, 220, 551, 789
BtsIMutI CAGTG 1 cut(s) 783
Cac8I GCNNGC 3 cut(s) 126, 546, 1035
CfoI GCGC 3 cut(s) 126, 128, 706
Cfr10I RCCGGY 2 cut(s) 79, 1072
Cfr13I GGNCC 2 cut(s) 451, 636
Csp6I GTAC 4 cut(s) 214, 354, 374, 1051
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 6 cut(s) 72, 120, 405, 516, 752, 972
CviQI GTAC 4 cut(s) 214, 354, 374, 1051
DdeI CTNAG 1 cut(s) 960
DpnI GATC 3 cut(s) 29, 825, 933
DpnII GATC 3 cut(s) 27, 823, 931
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EaeI YGGCCR 2 cut(s) 153, 218
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
Ecl136II GAGCTC 1 cut(s) 593
Eco105I TACGTA 1 cut(s) 1054
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 451, 636
Eco53kI GAGCTC 1 cut(s) 593
Eco81I CCTNAGG 1 cut(s) 960
EcoICRI GAGCTC 1 cut(s) 593
EcoNI CCTNNNNNAGG 1 cut(s) 679
EcoO109I RGGNCCY 2 cut(s) 451, 636
EcoT38I GRGCYC 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 734
FaeI CATG 6 cut(s) 75, 123, 408, 519, 755, 975
FaqI GGGAC 2 cut(s) 637, 727
FatI CATG 6 cut(s) 71, 119, 404, 515, 751, 971
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 5 cut(s) 221, 489, 510, 549, 1087
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 5 cut(s) 221, 489, 510, 549, 1087
FspBI CTAG 2 cut(s) 351, 1090
GlaI GCGC 3 cut(s) 125, 127, 705
GluI GCNGC 5 cut(s) 221, 489, 510, 549, 1087
HaeIII GGCC 4 cut(s) 155, 220, 551, 789
HapII CCGG 4 cut(s) 80, 377, 857, 1073
HhaI GCGC 3 cut(s) 126, 128, 706
Hin1II CATG 6 cut(s) 75, 123, 408, 519, 755, 975
Hin6I GCGC 3 cut(s) 124, 126, 704
HinP1I GCGC 3 cut(s) 124, 126, 704
HinfI GANTC 9 cut(s) 99, 199, 242, 417, 428, 533, 604, 889, 926
HpaII CCGG 4 cut(s) 80, 377, 857, 1073
HphI GGTGA 4 cut(s) 20, 814, 950, 1062
Hpy166II GTNNAC 2 cut(s) 532, 914
Hpy188I TCNGA 3 cut(s) 98, 931, 997
Hpy188III TCNNGA 5 cut(s) 61, 196, 205, 440, 770
Hpy8I GTNNAC 2 cut(s) 532, 914
Hpy99I CGWCG 2 cut(s) 62, 908
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 8 cut(s) 114, 264, 302, 491, 845, 914, 975, 1037
HpyF10VI GCNNNNNNNGC 1 cut(s) 756
HpyF3I CTNAG 1 cut(s) 960
HpySE526I ACGT 1 cut(s) 1053
Hsp92II CATG 6 cut(s) 75, 123, 408, 519, 755, 975
HspAI GCGC 3 cut(s) 124, 126, 704
KpnI GGTACC 1 cut(s) 377
Kzo9I GATC 3 cut(s) 27, 823, 931
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 1 cut(s) 475
MaeI CTAG 2 cut(s) 351, 1090
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 1 cut(s) 938
MalI GATC 3 cut(s) 29, 825, 933
MboI GATC 3 cut(s) 27, 823, 931
MboII GAAGA 6 cut(s) 323, 487, 532, 724, 977, 1014
MhlI GDGCHC 4 cut(s) 169, 595, 916, 987
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 6 cut(s) 20, 659, 763, 849, 991, 1007
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 63
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 3 cut(s) 131, 288, 584
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 4 cut(s) 80, 377, 857, 1073
MspR9I CCNGG 1 cut(s) 857
MvnI CGCG 2 cut(s) 126, 706
MwoI GCNNNNNNNGC 1 cut(s) 756
NciI CCSGG 1 cut(s) 857
NdeII GATC 3 cut(s) 27, 823, 931
NlaIII CATG 6 cut(s) 75, 123, 408, 519, 755, 975
NlaIV GGNNCC 2 cut(s) 347, 375
NmuCI GTSAC 1 cut(s) 938
NspI RCATGY 1 cut(s) 975
PalAI GGCGCGCC 1 cut(s) 124
PauI GCGCGC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 8 cut(s) 99, 199, 242, 417, 428, 604, 889, 926
PflMI CCANNNNNTGG 1 cut(s) 151
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 5 cut(s) 222, 490, 511, 550, 1088
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
Ppu21I YACGTR 1 cut(s) 1054
PpuMI RGGWCCY 2 cut(s) 451, 636
Psp124BI GAGCTC 1 cut(s) 595
Psp5II RGGWCCY 2 cut(s) 451, 636
PspN4I GGNNCC 2 cut(s) 347, 375
PspPI GGNCC 2 cut(s) 451, 636
PspPPI RGGWCCY 2 cut(s) 451, 636
PteI GCGCGC 1 cut(s) 124
RsaI GTAC 4 cut(s) 215, 355, 375, 1052
RsaNI GTAC 4 cut(s) 214, 354, 374, 1051
SacI GAGCTC 1 cut(s) 595
SaqAI TTAA 3 cut(s) 131, 288, 584
SatI GCNGC 5 cut(s) 221, 489, 510, 549, 1087
Sau3AI GATC 3 cut(s) 27, 823, 931
Sau96I GGNCC 2 cut(s) 451, 636
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 1 cut(s) 857
SduI GDGCHC 4 cut(s) 169, 595, 916, 987
SetI ASST 8 cut(s) 375, 453, 595, 638, 940, 1018, 1056, 1084
SgrAI CRCCGGYG 1 cut(s) 1072
SgsI GGCGCGCC 1 cut(s) 124
SinI GGWCC 2 cut(s) 451, 636
SmlI CTYRAG 2 cut(s) 438, 539
SmoI CTYRAG 2 cut(s) 438, 539
SnaBI TACGTA 1 cut(s) 1054
Sse9I AATT 6 cut(s) 20, 659, 763, 849, 991, 1007
SsiI CCGC 6 cut(s) 5, 221, 462, 509, 548, 1086
SspMI CTAG 2 cut(s) 351, 1090
SstI GAGCTC 1 cut(s) 595
StyD4I CCNGG 1 cut(s) 855
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 1056
TaqI TCGA 5 cut(s) 60, 822, 903, 934, 987
TasI AATT 6 cut(s) 20, 659, 763, 849, 991, 1007
TauI GCSGC 4 cut(s) 223, 512, 551, 1089
TfiI GAWTC 8 cut(s) 99, 199, 242, 417, 428, 604, 889, 926
Tru1I TTAA 3 cut(s) 131, 288, 584
Tru9I TTAA 3 cut(s) 131, 288, 584
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 6 cut(s) 60, 234, 324, 336, 504, 653
TspGWI ACGGA 3 cut(s) 92, 429, 882
TspRI CASTG 1 cut(s) 790
Van91I CCANNNNNTGG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 912
VpaK11BI GGWCC 2 cut(s) 451, 636
XagI CCTNNNNNAGG 1 cut(s) 679
XapI RAATTY 3 cut(s) 659, 763, 849
XceI RCATGY 1 cut(s) 975
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 2 cut(s) 351, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.