MD09G1085800.v1.1

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0017351
Physical Location & Seq
Forward (+)
6113018 .. 6113779
762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1085800.v1.1.491

Sequence Viewer

Length: 315 bp
ATGGCGGTCGGAAGGATTGGTAGAGGTTTAATGGCTCCTCTTCTGGTAGTCAACTTGGTGGTCCATCTGATCATGCTTGGACTTGCTTGTTTGTCCCTTGATAAATACATCAACGGAGAGCAAAATCACCCCCATTTGGGAGGCAATACATCGACTAGCTTCTTGTTGATCTTTGCATTGATAGCCGGTGTGGTTGGTGCTGCTTCTGTGCTTTACGGTCTGATACATCTCCGGATATGGCGAACTGATAGTTTAGCCGATGCAGCTTCTTCAGCTATCGTCGCCCTGACGATTATCGCCTTCGCTTTCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

105

Amino Acids

10.87

Weight (kDa)

8.02

Isoelectric Point (pI)

19.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 16 - 104 1.2e-21 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45320
malus_domestica MD09G1085800.v1.1 MD17G1074700.v1.1
rosa_chinensis RchiOBHm_Chr2g0163081
rosa_laevigata RLG00000021372
rosa_multiflora Rmu_sc0003984.1_g000006
rosa_roxburghii Rroxscaffold_2G00087560
rosa_rugosa Rorug02G0500200 Rorug02G0500200
rosa_samantha Rh2AG566600 Rh2BG579000 Rh2CG548900
rosa_wichuraiana Rw2G046910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 231
AciI CCGC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 136, 137
AluBI AGCT 3 cut(s) 159, 266, 275
AluI AGCT 3 cut(s) 159, 266, 275
Aor13HI TCCGGA 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 200, 263
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 187, 275
BccI CCATC 1 cut(s) 72
BclI TGATCA 1 cut(s) 69
BfaI CTAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 201, 264
BlsI GCNGC 2 cut(s) 202, 265
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 137
Bse118I RCCGGY 1 cut(s) 185
BseAI TCCGGA 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 136, 137
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 187, 275
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 186, 232
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 136, 137
BsmFI GGGAC 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 2 cut(s) 69, 168
BspACI CCGC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 2 cut(s) 69, 168
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 45
BstKTI GATC 2 cut(s) 72, 171
BstMBI GATC 2 cut(s) 69, 168
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 182, 263, 272, 281
BstV1I GCAGC 2 cut(s) 187, 275
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 1 cut(s) 73
CviJI RGCY 6 cut(s) 35, 159, 185, 257, 266, 275
CviKI_1 RGCY 6 cut(s) 35, 159, 185, 257, 266, 275
DpnI GATC 2 cut(s) 71, 170
DpnII GATC 2 cut(s) 69, 168
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 255
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 74, 238
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 201, 264
Fsp4HI GCNGC 2 cut(s) 201, 264
FspBI CTAG 1 cut(s) 156
GluI GCNGC 2 cut(s) 201, 264
HapII CCGG 2 cut(s) 186, 232
Hin1II CATG 1 cut(s) 76
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HpaII CCGG 2 cut(s) 186, 232
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 11, 69, 222
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 6, 310
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 176, 263
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 263, 272, 281
Hsp92II CATG 1 cut(s) 76
Kpn2I TCCGGA 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 168
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 29, 199, 245, 299
Lsp1109I GCAGC 2 cut(s) 187, 275
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 156
MalI GATC 2 cut(s) 71, 170
MboI GATC 2 cut(s) 69, 168
MboII GAAGA 2 cut(s) 32, 261
MnlI CCTC 3 cut(s) 17, 48, 134
MroI TCCGGA 1 cut(s) 231
MseI TTAA 1 cut(s) 29
MspI CCGG 2 cut(s) 186, 232
MwoI GCNNNNNNNGC 4 cut(s) 182, 263, 272, 281
NdeII GATC 2 cut(s) 69, 168
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 202, 265
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 201, 264
Sau3AI GATC 2 cut(s) 69, 168
Sau96I GGNCC 1 cut(s) 61
SetI ASST 4 cut(s) 28, 161, 268, 277
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 61
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 152
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 2 cut(s) 200, 263
TspGWI ACGGA 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 61
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.