Rh2BG579000

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017351
Physical Location & Seq
Reverse (-)
79637714 .. 79638481
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG579000.1

Sequence Viewer

Length: 468 bp
ATGGCGCTTGGAAGAGTTGGAAGAAGCTTCATGGCTCCTATTTTAGCAGTCAACCTGGTGGTTCATCTGATCGTGGTTGGATTGGCTGGTTGGTCACTTGATAAGTACATCGACGGCGAACAAAATCACCCACATTTGGGAGGGAATACATCGACTAACTTTATGTTAATCTTTGCTCTAATTGCCGGAGCGTTTGGTGCTTGCTCTGTAATTATAGGGATGATGCATCTGCAGGCATGGCAGCACGAAAGTCATGCTGCTGCAGCTTCTTTAGCCATTATTTCCTGGGCCATGATAGCACTGGCTTTCGGTTTTGTATGTAAGGAGGTCATATTAGGGGGACACAGAGGAAAACGATTGCAAACATTGGAACTTTTAATTGCAATATCACTACTAAGTCAACTGCTGTACTTGGTGCTACTGAATGCCGGGCTGTTCAAGAGGAGATATGGACCAACTGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

155

Amino Acids

16.69

Weight (kDa)

9.44

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 17 - 144 3.8e-37 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45320
malus_domestica MD09G1085800.v1.1 MD17G1074700.v1.1
rosa_chinensis RchiOBHm_Chr2g0163081
rosa_laevigata RLG00000021372
rosa_multiflora Rmu_sc0003984.1_g000006
rosa_roxburghii Rroxscaffold_2G00087560
rosa_rugosa Rorug02G0500200 Rorug02G0500200
rosa_samantha Rh2AG566600 Rh2BG579000 Rh2CG548900
rosa_wichuraiana Rw2G046910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 107, 410
AfiI CCNNNNNNNGG 2 cut(s) 136, 137
AgsI TTSAA 1 cut(s) 439
AjnI CCWGG 2 cut(s) 54, 284
AluBI AGCT 2 cut(s) 27, 266
AluI AGCT 2 cut(s) 27, 266
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 4 cut(s) 241, 257, 260, 263
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 288, 452
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 452
BbvI GCAGC 4 cut(s) 244, 247, 253, 275
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 56, 286
BcnI CCSGG 1 cut(s) 430
BfmI CTRYAG 2 cut(s) 230, 261
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 242, 258, 261, 264
BlsI GCNGC 4 cut(s) 243, 259, 262, 265
Bme1390I CCNGG 3 cut(s) 56, 286, 430
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 288, 452
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 56, 286, 430
BmsI GCATC 2 cut(s) 213, 235
BpuMI CCSGG 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 137
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 56, 286
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 136, 137
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 457
BseXI GCAGC 4 cut(s) 244, 247, 253, 275
BshFI GGCC 1 cut(s) 290
BsiSI CCGG 2 cut(s) 186, 429
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 136, 137
BsmFI GGGAC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 69
BspANI GGCC 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 2 cut(s) 234, 265
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 56, 286
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 7
BstC8I GCNNGC 2 cut(s) 202, 234
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 182, 197, 238, 263, 272, 296
BstNI CCWGG 2 cut(s) 56, 286
BstSCI CCNGG 3 cut(s) 54, 284, 428
BstSFI CTRYAG 2 cut(s) 230, 261
BstV1I GCAGC 4 cut(s) 244, 247, 253, 275
BsuRI GGCC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 202, 234
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 288, 452
CsiI ACCWGGT 1 cut(s) 54
Csp6I GTAC 2 cut(s) 106, 409
CviAII CATG 4 cut(s) 31, 237, 254, 292
CviJI RGCY 8 cut(s) 27, 35, 86, 266, 275, 290, 305, 433
CviKI_1 RGCY 8 cut(s) 27, 35, 86, 266, 275, 290, 305, 433
CviQI GTAC 2 cut(s) 106, 409
DdeI CTNAG 1 cut(s) 395
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 54, 284
EcoT22I ATGCAT 1 cut(s) 228
FaeI CATG 4 cut(s) 34, 240, 257, 295
FaiI YATR 9 cut(s) 32, 164, 215, 238, 255, 293, 319, 332, 450
FaqI GGGAC 1 cut(s) 354
FatI CATG 4 cut(s) 30, 236, 253, 291
Fnu4HI GCNGC 4 cut(s) 242, 258, 261, 264
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 4 cut(s) 242, 258, 261, 264
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 242, 258, 261, 264
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 290
HapII CCGG 2 cut(s) 186, 429
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 34, 240, 257, 295
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 52, 401
HindII GTYRAC 2 cut(s) 52, 401
HindIII AAGCTT 1 cut(s) 25
HpaII CCGG 2 cut(s) 186, 429
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 52, 401
Hpy188I TCNGA 2 cut(s) 69, 467
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 2 cut(s) 52, 401
Hpy99I CGWCG 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 226, 232, 263, 361, 383
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 197, 238, 263, 272, 296
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 4 cut(s) 34, 240, 257, 295
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 40, 188
LpnPI CCDG 9 cut(s) 41, 68, 72, 199, 218, 271, 287, 298, 442
Lsp1109I GCAGC 4 cut(s) 244, 247, 253, 275
LweI GCATC 2 cut(s) 213, 235
MabI ACCWGGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 93
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 24, 33
MluCI AATT 3 cut(s) 180, 210, 378
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 4 cut(s) 134, 319, 341, 435
Mph1103I ATGCAT 1 cut(s) 228
MseI TTAA 2 cut(s) 167, 377
MspI CCGG 2 cut(s) 186, 429
MspR9I CCNGG 3 cut(s) 56, 286, 430
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 56, 286
MwoI GCNNNNNNNGC 6 cut(s) 182, 197, 238, 263, 272, 296
NciI CCSGG 1 cut(s) 430
NdeII GATC 1 cut(s) 69
NlaIII CATG 4 cut(s) 34, 240, 257, 295
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 228
PctI GAATGC 1 cut(s) 430
PkrI GCNGC 4 cut(s) 243, 259, 262, 265
Psp6I CCWGG 2 cut(s) 54, 284
PspGI CCWGG 2 cut(s) 54, 284
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 288, 452
PstI CTGCAG 2 cut(s) 234, 265
RsaI GTAC 2 cut(s) 107, 410
RsaNI GTAC 2 cut(s) 106, 409
SaqAI TTAA 2 cut(s) 167, 377
SatI GCNGC 4 cut(s) 242, 258, 261, 264
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 2 cut(s) 288, 452
ScrFI CCNGG 3 cut(s) 56, 286, 430
SetI ASST 4 cut(s) 29, 57, 268, 330
SexAI ACCWGGT 1 cut(s) 54
SfaNI GCATC 2 cut(s) 213, 235
SfcI CTRYAG 2 cut(s) 230, 261
SinI GGWCC 1 cut(s) 452
Sse9I AATT 3 cut(s) 180, 210, 378
StyD4I CCNGG 3 cut(s) 54, 284, 428
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 111, 152
TasI AATT 3 cut(s) 180, 210, 378
TatI WGTACW 2 cut(s) 105, 408
Tru1I TTAA 2 cut(s) 167, 377
Tru9I TTAA 2 cut(s) 167, 377
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 4 cut(s) 241, 257, 260, 263
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 19, 53
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.