MD17G1074700.v1.1

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017351
Physical Location & Seq
Forward (+)
6061592 .. 6062817
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1074700.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGCGGTCGGAAGGATTGGTAGAGGTTTAATGGCTCCTCTTCTGGTAGTCAACTTGGTGGTCCATCTGATCATGCTTGGACTTGCTGGTTGGTCCCTTGATAAGTACATCAATGGAGAGCAAAATCACCCCCATTTGGGAGGGAATACATCGACTACCTTCTTGTTGATCTTTGCATTGATAGCCGGTGTGGTTGGGGCTGCTTCTGTGCTTTATGGTCTGATACATCTCCGGATATGGCGAACTGATAGTTTAGCCGGTGCAGCTTCTTCAGCTATCATAGCCCTGACGATTATCGCCCTCACTTTCGGTTTTGTGTGCAAGGAGATCATACTTGGAGGGCACAGAGGAAAACGCTTGCAAACATTGGAAGCTATGATTGCAATATTACTACTAAGTCAATTGCTTTACCTGGTGCTTCTGCATGCTGGGATGTTTAGGAGCAGACATAGACATGGAGGAATTGGCATGGGTAATGACCCCTGGAGCGCCGGCACGACGACTGTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

171

Amino Acids

18.11

Weight (kDa)

10.27

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 16 - 144 9.5e-42 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45320
malus_domestica MD09G1085800.v1.1 MD17G1074700.v1.1
rosa_chinensis RchiOBHm_Chr2g0163081
rosa_laevigata RLG00000021372
rosa_multiflora Rmu_sc0003984.1_g000006
rosa_roxburghii Rroxscaffold_2G00087560
rosa_rugosa Rorug02G0500200 Rorug02G0500200
rosa_samantha Rh2AG566600 Rh2BG579000 Rh2CG548900
rosa_wichuraiana Rw2G046910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 231
AciI CCGC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 136, 137
AjnI CCWGG 2 cut(s) 411, 482
AluBI AGCT 3 cut(s) 266, 275, 374
AluI AGCT 3 cut(s) 266, 275, 374
Aor13HI TCCGGA 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 200, 263
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 61, 93
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 61, 93
BaeGI GKGCMC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 187, 275
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 413, 484
BclI TGATCA 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 492
BisI GCNGC 2 cut(s) 201, 264
BlsI GCNGC 2 cut(s) 202, 265
Bme1390I CCNGG 2 cut(s) 413, 484
Bme18I GGWCC 2 cut(s) 61, 93
BmgT120I GGNCC 2 cut(s) 61, 93
BmiI GGNNCC 2 cut(s) 36, 95
BmrFI CCNGG 2 cut(s) 413, 484
BpmI CTGGAG 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 482
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 137
Bse118I RCCGGY 3 cut(s) 185, 257, 491
BseAI TCCGGA 1 cut(s) 231
BseBI CCWGG 2 cut(s) 413, 484
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 136, 137
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 2 cut(s) 187, 275
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 4 cut(s) 186, 232, 258, 492
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 136, 137
BsmFI GGGAC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 345
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 4 cut(s) 69, 168, 327, 507
BspACI CCGC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 36, 95
BsrFI RCCGGY 3 cut(s) 185, 257, 491
BssAI RCCGGY 3 cut(s) 185, 257, 491
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 4 cut(s) 69, 168, 327, 507
Bst2UI CCWGG 2 cut(s) 413, 484
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 359, 426, 493
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 4 cut(s) 72, 171, 330, 510
BstMBI GATC 4 cut(s) 69, 168, 327, 507
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 5 cut(s) 182, 263, 272, 281, 380
BstNI CCWGG 2 cut(s) 413, 484
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 411, 482
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 187, 275
BtsCI GGATG 1 cut(s) 438
Cac8I GCNNGC 3 cut(s) 359, 426, 493
CfoI GCGC 1 cut(s) 491
Cfr10I RCCGGY 3 cut(s) 185, 257, 491
Cfr13I GGNCC 2 cut(s) 61, 93
CsiI ACCWGGT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 106
CviAII CATG 4 cut(s) 73, 425, 455, 469
CviJI RGCY 8 cut(s) 35, 185, 200, 257, 266, 275, 284, 374
CviKI_1 RGCY 8 cut(s) 35, 185, 200, 257, 266, 275, 284, 374
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 395
DpnI GATC 4 cut(s) 71, 170, 329, 509
DpnII GATC 4 cut(s) 69, 168, 327, 507
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 61, 93
Eco57I CTGAAG 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 411, 482
FaeI CATG 4 cut(s) 76, 428, 458, 472
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 72, 424, 454, 468
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 201, 264
FokI GGATG 1 cut(s) 445
Fsp4HI GCNGC 2 cut(s) 201, 264
GlaI GCGC 1 cut(s) 490
GluI GCNGC 2 cut(s) 201, 264
GsaI CCCAGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 505
HaeII RGCGCY 1 cut(s) 492
HapII CCGG 4 cut(s) 186, 232, 258, 492
HhaI GCGC 1 cut(s) 491
Hin1II CATG 4 cut(s) 76, 428, 458, 472
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HpaII CCGG 4 cut(s) 186, 232, 258, 492
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 4 cut(s) 11, 69, 222, 512
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 2 cut(s) 6, 169
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 6 cut(s) 176, 263, 321, 361, 383, 424
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 263, 272, 281, 380
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 4 cut(s) 76, 428, 458, 472
HspAI GCGC 1 cut(s) 489
Kpn2I TCCGGA 1 cut(s) 231
KroI GCCGGC 1 cut(s) 491
KroNI GCCGGC 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 168, 327, 507
LmnI GCTCC 3 cut(s) 40, 441, 486
Lsp1109I GCAGC 2 cut(s) 187, 275
MabI ACCWGGT 1 cut(s) 411
MalI GATC 4 cut(s) 71, 170, 329, 509
MboI GATC 4 cut(s) 69, 168, 327, 507
MboII GAAGA 2 cut(s) 32, 261
MfeI CAATTG 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 2 cut(s) 401, 462
MnlI CCTC 7 cut(s) 17, 48, 134, 311, 332, 341, 452
MroI TCCGGA 1 cut(s) 231
MroNI GCCGGC 1 cut(s) 491
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 4 cut(s) 186, 232, 258, 492
MspR9I CCNGG 2 cut(s) 413, 484
MunI CAATTG 1 cut(s) 401
MvaI CCWGG 2 cut(s) 413, 484
MwoI GCNNNNNNNGC 5 cut(s) 182, 263, 272, 281, 380
NaeI GCCGGC 1 cut(s) 493
NdeII GATC 4 cut(s) 69, 168, 327, 507
NgoMIV GCCGGC 1 cut(s) 491
NlaIII CATG 4 cut(s) 76, 428, 458, 472
NlaIV GGNNCC 2 cut(s) 36, 95
NspI RCATGY 1 cut(s) 428
PaeI GCATGC 1 cut(s) 428
PdiI GCCGGC 1 cut(s) 493
PkrI GCNGC 2 cut(s) 202, 265
Psp6I CCWGG 2 cut(s) 411, 482
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 2 cut(s) 411, 482
PspN4I GGNNCC 2 cut(s) 36, 95
PspPI GGNCC 2 cut(s) 61, 93
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 201, 264
Sau3AI GATC 4 cut(s) 69, 168, 327, 507
Sau96I GGNCC 2 cut(s) 61, 93
ScrFI CCNGG 2 cut(s) 413, 484
SduI GDGCHC 1 cut(s) 345
SetI ASST 6 cut(s) 28, 161, 268, 277, 376, 414
SexAI ACCWGGT 1 cut(s) 411
SinI GGWCC 2 cut(s) 61, 93
SmiMI CAYNNNNRTG 1 cut(s) 453
SphI GCATGC 1 cut(s) 428
Sse9I AATT 2 cut(s) 401, 462
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 411, 482
TaaI ACNGT 1 cut(s) 505
TaqI TCGA 1 cut(s) 152
TasI AATT 2 cut(s) 401, 462
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 2 cut(s) 200, 263
VpaK11BI GGWCC 2 cut(s) 61, 93
XceI RCATGY 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.