RLG00000021372

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017351
Physical Location & Seq
Reverse (-)
74641807 .. 74642579
773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021372

Sequence Viewer

Length: 468 bp
ATGGCGCTTGGAAGACTTGGAAGAAGCTTCATGGCTCCTATTTTAGCAGTCAACCTGGTGGTGCATCTGATCGTCGTTGGGTTGGCTGGTTGGTCAGTTGATAAGTACATCGACGGCGAACAAAATCACCCACATTTGGGAGGGAATACATCGACTAACTTTATGTTAATCTTTGCTCTAATTGCCGGAGCGTTTGGTGCTTGCTCTGTAATTATAGGGATGATGCATCTGCAGGCCTGGCAGCACGAAAGTCATGCTGCTGCAGCTTCTTTAGCCATTATGTCCTGGGCTATGATAGCCCTGTCTTTCGGTTTTGTATGTAAGGAGGTCATATTAGGGGGATACAGAGGAAAACGATTGCAAACATTGGAGCTTTTAATTGCAATATCACTACTAAGTCAATTGCTGTACTTGGTGCTATTGAATGCTGGGCTGTTCAAGAGGAGATATGGACCAACTGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

156

Amino Acids

16.75

Weight (kDa)

9.39

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 17 - 144 1.1e-35 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45320
malus_domestica MD09G1085800.v1.1 MD17G1074700.v1.1
rosa_chinensis RchiOBHm_Chr2g0163081
rosa_laevigata RLG00000021372
rosa_multiflora Rmu_sc0003984.1_g000006
rosa_roxburghii Rroxscaffold_2G00087560
rosa_rugosa Rorug02G0500200 Rorug02G0500200
rosa_samantha Rh2AG566600 Rh2BG579000 Rh2CG548900
rosa_wichuraiana Rw2G046910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 107, 410
AfiI CCNNNNNNNGG 2 cut(s) 136, 137
AgsI TTSAA 2 cut(s) 424, 439
AjnI CCWGG 3 cut(s) 54, 236, 284
AluBI AGCT 3 cut(s) 27, 266, 373
AluI AGCT 3 cut(s) 27, 266, 373
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 4 cut(s) 241, 257, 260, 263
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 4 cut(s) 244, 247, 253, 275
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 3 cut(s) 56, 238, 286
BciVI GTATCC 1 cut(s) 335
BfmI CTRYAG 2 cut(s) 230, 261
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 335
BisI GCNGC 4 cut(s) 242, 258, 261, 264
BlsI GCNGC 4 cut(s) 243, 259, 262, 265
Bme1390I CCNGG 3 cut(s) 56, 238, 286
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 56, 238, 286
BmsI GCATC 3 cut(s) 73, 213, 235
BpiI GAAGAC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 137
BseBI CCWGG 3 cut(s) 56, 238, 286
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 136, 137
BseRI GAGGAG 1 cut(s) 457
BseXI GCAGC 4 cut(s) 244, 247, 253, 275
BseYI CCCAGC 1 cut(s) 428
BshFI GGCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 136, 137
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 69
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 2 cut(s) 234, 265
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 69
Bst2UI CCWGG 3 cut(s) 56, 238, 286
Bst4CI ACNGT 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 202, 234
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 182, 197, 238, 263, 272, 296
BstNI CCWGG 3 cut(s) 56, 238, 286
BstSCI CCNGG 3 cut(s) 54, 236, 284
BstSFI CTRYAG 2 cut(s) 230, 261
BstV1I GCAGC 4 cut(s) 244, 247, 253, 275
BstV2I GAAGAC 1 cut(s) 19
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 202, 234
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 452
CsiI ACCWGGT 1 cut(s) 54
Csp6I GTAC 2 cut(s) 106, 409
CviAII CATG 2 cut(s) 31, 254
CviQI GTAC 2 cut(s) 106, 409
DdeI CTNAG 1 cut(s) 395
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 452
EcoRII CCWGG 3 cut(s) 54, 236, 284
EcoT22I ATGCAT 1 cut(s) 228
FaeI CATG 2 cut(s) 34, 257
FaiI YATR 9 cut(s) 32, 164, 215, 255, 281, 293, 319, 332, 450
FatI CATG 2 cut(s) 30, 253
Fnu4HI GCNGC 4 cut(s) 242, 258, 261, 264
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 4 cut(s) 242, 258, 261, 264
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 242, 258, 261, 264
GsaI CCCAGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 34, 257
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 25
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 69, 467
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 2 cut(s) 77, 116
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 6 cut(s) 64, 226, 232, 263, 361, 383
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 197, 238, 263, 272, 296
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 2 cut(s) 34, 257
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 3 cut(s) 40, 188, 370
Lsp1109I GCAGC 4 cut(s) 244, 247, 253, 275
LweI GCATC 3 cut(s) 73, 213, 235
MabI ACCWGGT 1 cut(s) 54
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 24, 33
MfeI CAATTG 1 cut(s) 401
MluCI AATT 4 cut(s) 180, 210, 378, 401
MnlI CCTC 4 cut(s) 134, 319, 341, 435
Mph1103I ATGCAT 1 cut(s) 228
MseI TTAA 2 cut(s) 167, 377
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 3 cut(s) 56, 238, 286
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 3 cut(s) 56, 238, 286
MwoI GCNNNNNNNGC 6 cut(s) 182, 197, 238, 263, 272, 296
NdeII GATC 1 cut(s) 69
NlaIII CATG 2 cut(s) 34, 257
NlaIV GGNNCC 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 228
PceI AGGCCT 1 cut(s) 236
PctI GAATGC 1 cut(s) 430
PkrI GCNGC 4 cut(s) 243, 259, 262, 265
Psp6I CCWGG 3 cut(s) 54, 236, 284
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 3 cut(s) 54, 236, 284
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 452
PstI CTGCAG 2 cut(s) 234, 265
RsaI GTAC 2 cut(s) 107, 410
RsaNI GTAC 2 cut(s) 106, 409
SaqAI TTAA 2 cut(s) 167, 377
SatI GCNGC 4 cut(s) 242, 258, 261, 264
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 452
ScrFI CCNGG 3 cut(s) 56, 238, 286
SetI ASST 5 cut(s) 29, 57, 268, 330, 375
SexAI ACCWGGT 1 cut(s) 54
SfaNI GCATC 3 cut(s) 73, 213, 235
SfcI CTRYAG 2 cut(s) 230, 261
SinI GGWCC 1 cut(s) 452
Sse9I AATT 4 cut(s) 180, 210, 378, 401
SseBI AGGCCT 1 cut(s) 236
StuI AGGCCT 1 cut(s) 236
StyD4I CCNGG 3 cut(s) 54, 236, 284
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 111, 152
TasI AATT 4 cut(s) 180, 210, 378, 401
TatI WGTACW 2 cut(s) 105, 408
Tru1I TTAA 2 cut(s) 167, 377
Tru9I TTAA 2 cut(s) 167, 377
TseI GCWGC 4 cut(s) 241, 257, 260, 263
TspDTI ATGAA 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 452
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.