MD09G1103100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0018496
Physical Location & Seq
Forward (+)
7548475 .. 7549248
774 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1103100.v1.1.491

Sequence Viewer

Length: 384 bp
ATGTTCTTGAGTTTTCTCGAAAAAACTGATCCGAACCAAGTCAGAACTATGAAGTTCCTCTTGGAGTTGGGGTCGTGTTACCGCTCATCGTCGACGCGAACACAAAATCATGTGAAGAGATCAACCCATGAGAGAAGCTCCAAATCTGGAAGTGGTCATCAATGGAGGCCAGCTCTGGTTGCAATCTCAGAGGATGGGGTTGTTTCTGGTCATGAGGGTAACGTTCAGTCTAAGAAGATGACATCAGCCAAAGGTCGACGGCCAAGGGCCAAAGTTCCAAGTTTCGGTTATACTACTAGTGATGATTTTCAGCACTACTCCAGGAAAAACGATGGGCCGACGATGGTACCTGCAGTGTTCTCAGCAACGCCGTTCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.23

Weight (kDa)

10.14

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018496)

Species Orthologous Gene IDs
malus_domestica MD09G1103100.v1.1
prunus_persica Prupe.3G222700_v2.0.a1
pyrus_communis pycom09g02630
rosa_laevigata RLG00000021219
rosa_roxburghii Rroxscaffold_2G00089770
rosa_rugosa Rorug02G0483500
rosa_samantha Rh2AG548800 Rh2BG562500 Rh2CG533100 Rh2DG571200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 2 cut(s) 92, 256
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 82
AclI AACGTT 1 cut(s) 222
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 260
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 284
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 2 cut(s) 138, 173
AluI AGCT 2 cut(s) 138, 173
AlwI GGATC 1 cut(s) 23
AoxI GGCC 4 cut(s) 167, 260, 267, 335
Asp718I GGTACC 1 cut(s) 346
AspS9I GGNCC 2 cut(s) 267, 335
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BanI GGYRCC 1 cut(s) 346
BccI CCATC 3 cut(s) 188, 326, 337
BceAI ACGGC 2 cut(s) 275, 355
BciT130I CCWGG 1 cut(s) 322
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 267, 335
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 322
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 157, 189
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 201, 375
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 4 cut(s) 169, 262, 269, 337
BshNI GGYRCC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 284
BsnI GGCC 4 cut(s) 169, 262, 269, 337
Bsp143I GATC 2 cut(s) 28, 119
BspACI CCGC 1 cut(s) 82
BspANI GGCC 4 cut(s) 169, 262, 269, 337
BspCNI CTCAG 2 cut(s) 200, 374
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 348
BspMAI CTGCAG 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 2 cut(s) 28, 119
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 187, 231, 361
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 31, 122
BstMBI GATC 2 cut(s) 28, 119
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 97
BsuRI GGCC 4 cut(s) 169, 262, 269, 337
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 171
CciI TCATGA 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 267, 335
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 347
CviAII CATG 4 cut(s) 110, 128, 212, 376
CviJI RGCY 7 cut(s) 138, 169, 173, 248, 262, 269, 337
CviKI_1 RGCY 7 cut(s) 138, 169, 173, 248, 262, 269, 337
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 3 cut(s) 187, 231, 361
DpnI GATC 2 cut(s) 30, 121
DpnII GATC 2 cut(s) 28, 119
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 4 cut(s) 113, 131, 215, 379
FaiI YATR 6 cut(s) 50, 111, 129, 213, 291, 377
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 4 cut(s) 109, 127, 211, 375
FblI GTMKAC 2 cut(s) 92, 256
FokI GGATG 1 cut(s) 206
FspBI CTAG 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 4 cut(s) 169, 262, 269, 337
HgaI GACGC 1 cut(s) 103
Hin1II CATG 4 cut(s) 113, 131, 215, 379
HincII GTYRAC 2 cut(s) 93, 257
HindII GTYRAC 2 cut(s) 93, 257
Hpy166II GTNNAC 2 cut(s) 93, 257
Hpy188I TCNGA 3 cut(s) 33, 44, 190
Hpy188III TCNNGA 4 cut(s) 7, 17, 147, 212
Hpy8I GTNNAC 2 cut(s) 93, 257
Hpy99I CGWCG 4 cut(s) 94, 97, 261, 343
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 182, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 3 cut(s) 187, 231, 361
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 4 cut(s) 113, 131, 215, 379
KpnI GGTACC 1 cut(s) 350
Kzo9I GATC 2 cut(s) 28, 119
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 7 cut(s) 132, 161, 183, 192, 307, 334, 363
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 77, 218
MalI GATC 2 cut(s) 30, 121
MbiI CCGCTC 1 cut(s) 84
MboI GATC 2 cut(s) 28, 119
MboII GAAGA 2 cut(s) 127, 247
MnlI CCTC 4 cut(s) 68, 159, 184, 208
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 28, 119
NlaIII CATG 4 cut(s) 113, 131, 215, 379
NlaIV GGNNCC 1 cut(s) 348
PagI TCATGA 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 320
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 267, 335
PstI CTGCAG 1 cut(s) 355
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SalI GTCGAC 2 cut(s) 91, 255
Sau3AI GATC 2 cut(s) 28, 119
Sau96I GGNCC 2 cut(s) 267, 335
ScrFI CCNGG 1 cut(s) 322
SetI ASST 5 cut(s) 140, 175, 225, 256, 352
SfcI CTRYAG 1 cut(s) 351
SgrDI CGTCGACG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
SpeI ACTAGT 1 cut(s) 296
SsiI CCGC 1 cut(s) 82
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 18, 92, 256
TscAI CASTG 1 cut(s) 360
TspDTI ATGAA 2 cut(s) 65, 364
TspRI CASTG 1 cut(s) 360
XmiI GTMKAC 2 cut(s) 92, 256
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.