Rorug02G0483500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018496
Physical Location & Seq
Reverse (-)
61338779 .. 61339578
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0483500.1

Sequence Viewer

Length: 540 bp
ATGGAGGCTATAGATGAAATGACAGTGCGCTTGGCTGCATTTCTGGGACTGGCAGATGCCCGAAAGCCAGTGGACCTCCGACCACTGAAAGGAGAAGGCCTGCGCCGATCCCAAACATACTTGGTAGGGAAGCTCTTGACTGCTCGAGCTTTCAACAAACGATGCCTCCGGCGAGTGGGGAGTGCTCTGAGACGATATGTTCAGAAAAATGCAGTTAGGTTTGATGCAGGACGGATTCGGATCGGGGTTGAGATGGACCTAATGCAACCTGTAATCTTTCGCCGGAGTTTTATGGTGGATGATGGAGTTGATGTCGACCTGGACTTCTTCTTCGAGAACCTCTATGGCCAGTGTAAGGACTGTGGCCTTCTTACTCATGTTGAGCTGCCATTCTCTGGACCACCACTGCCGGAAGTCCTAAGAACTGAGACAACTACTACGCGGCGGAACTTGGAGGGTGTATTGAGTAGGGTGGATGTAACACCAATTGCAGGTCCATCCTTGGTGTTTAGGGCACAGGCCGGAAGTCTTAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.08

Weight (kDa)

9.71

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 85 - 128 6.2e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018496)

Species Orthologous Gene IDs
malus_domestica MD09G1103100.v1.1
prunus_persica Prupe.3G222700_v2.0.a1
pyrus_communis pycom09g02630
rosa_laevigata RLG00000021219
rosa_roxburghii Rroxscaffold_2G00089770
rosa_rugosa Rorug02G0483500
rosa_samantha Rh2AG548800 Rh2BG562500 Rh2CG533100 Rh2DG571200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 482
AccB7I CCANNNNNTGG 1 cut(s) 395
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 442
AciI CCGC 2 cut(s) 442, 445
AclWI GGATC 2 cut(s) 102, 248
AcoI YGGCCR 1 cut(s) 346
AfiI CCNNNNNNNGG 5 cut(s) 89, 175, 355, 395, 491
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 3 cut(s) 133, 149, 385
AluI AGCT 3 cut(s) 133, 149, 385
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 184, 422
AlwI GGATC 2 cut(s) 102, 248
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 4 cut(s) 97, 346, 364, 519
ApeKI GCWGC 2 cut(s) 35, 385
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
AspLEI GCGC 2 cut(s) 30, 105
AspS9I GGNCC 4 cut(s) 73, 256, 398, 494
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 4 cut(s) 73, 256, 398, 494
BaeGI GKGCMC 1 cut(s) 517
BalI TGGCCA 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 22, 372
BccI CCATC 3 cut(s) 247, 296, 505
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 184, 422
BfmI CTRYAG 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 3 cut(s) 36, 386, 443
BlsI GCNGC 3 cut(s) 37, 387, 444
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 4 cut(s) 73, 256, 398, 494
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 4 cut(s) 73, 256, 398, 494
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 3 cut(s) 46, 152, 214
BsaBI GATNNNNATC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 501
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 297, 327
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 175, 355, 395, 491
Bse1I ACTGG 3 cut(s) 54, 68, 349
Bse8I GATNNNNATC 1 cut(s) 239
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 3 cut(s) 304, 481, 497
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 5 cut(s) 89, 175, 355, 395, 491
BseMII CTCAG 2 cut(s) 179, 417
BseNI ACTGG 3 cut(s) 54, 68, 349
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 2 cut(s) 22, 372
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 4 cut(s) 99, 348, 366, 521
BsiHKAI GWGCWC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 4 cut(s) 169, 283, 410, 522
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 5 cut(s) 89, 175, 355, 395, 491
BsmAI GTCTC 2 cut(s) 184, 422
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 4 cut(s) 99, 348, 366, 521
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 187, 517
Bsp143I GATC 2 cut(s) 107, 240
BspACI CCGC 2 cut(s) 442, 445
BspANI GGCC 4 cut(s) 99, 348, 366, 521
BspCNI CTCAG 2 cut(s) 180, 418
BspFNI CGCG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 102, 248
BspTI CTTAAG 1 cut(s) 530
BsrI ACTGG 3 cut(s) 54, 68, 349
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 2 cut(s) 107, 240
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 25, 362
BstAFI CTTAAG 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 3 cut(s) 188, 419, 426
BstF5I GGATG 3 cut(s) 304, 481, 497
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 2 cut(s) 30, 105
BstKTI GATC 2 cut(s) 110, 243
BstMAI GTCTC 2 cut(s) 184, 422
BstMBI GATC 2 cut(s) 107, 240
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 517
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 22, 372
BsuRI GGCC 4 cut(s) 99, 348, 366, 521
BtsCI GGATG 3 cut(s) 304, 481, 497
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 5 cut(s) 30, 75, 83, 356, 404
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 2 cut(s) 30, 105
Cfr13I GGNCC 4 cut(s) 73, 256, 398, 494
CviAII CATG 1 cut(s) 377
DdeI CTNAG 3 cut(s) 188, 419, 426
DpnI GATC 2 cut(s) 109, 242
DpnII GATC 2 cut(s) 107, 240
EaeI YGGCCR 1 cut(s) 346
EciI GGCGGA 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 99
Eco47I GGWCC 4 cut(s) 73, 256, 398, 494
Eco88I CYCGRG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 1 cut(s) 380
FaiI YATR 6 cut(s) 11, 118, 198, 293, 345, 378
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 376
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 36, 386, 443
FokI GGATG 3 cut(s) 311, 484, 488
Fsp4HI GCNGC 3 cut(s) 36, 386, 443
GlaI GCGC 2 cut(s) 29, 104
GluI GCNGC 3 cut(s) 36, 386, 443
HaeIII GGCC 4 cut(s) 99, 348, 366, 521
HapII CCGG 4 cut(s) 169, 283, 410, 522
HhaI GCGC 2 cut(s) 30, 105
Hin1II CATG 1 cut(s) 380
Hin6I GCGC 2 cut(s) 28, 103
HinP1I GCGC 2 cut(s) 28, 103
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 1 cut(s) 235
HpaII CCGG 4 cut(s) 169, 283, 410, 522
Hpy166II GTNNAC 2 cut(s) 73, 316
Hpy188I TCNGA 4 cut(s) 80, 189, 204, 240
Hpy188III TCNNGA 3 cut(s) 136, 334, 396
Hpy8I GTNNAC 2 cut(s) 73, 316
HpyAV CCTTC 2 cut(s) 89, 377
HpyCH4III ACNGT 2 cut(s) 25, 362
HpyCH4V TGCA 5 cut(s) 38, 212, 227, 265, 491
HpyF3I CTNAG 3 cut(s) 188, 419, 426
Hsp92II CATG 1 cut(s) 380
HspAI GCGC 2 cut(s) 28, 103
Kzo9I GATC 2 cut(s) 107, 240
Lsp1109I GCAGC 2 cut(s) 22, 372
LweI GCATC 3 cut(s) 46, 152, 214
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 109, 242
MboI GATC 2 cut(s) 107, 240
MboII GAAGA 2 cut(s) 319, 322
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 187, 517
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 1 cut(s) 486
MluNI TGGCCA 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 4 cut(s) 86, 176, 350, 448
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 1 cut(s) 531
Msp20I TGGCCA 1 cut(s) 348
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 4 cut(s) 169, 283, 410, 522
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 442
NdeII GATC 2 cut(s) 107, 240
NlaIII CATG 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 144
PceI AGGCCT 1 cut(s) 99
PfeI GAWTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 3 cut(s) 37, 387, 444
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspPI GGNCC 4 cut(s) 73, 256, 398, 494
PspXI VCTCGAGB 1 cut(s) 144
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 3 cut(s) 36, 386, 443
Sau3AI GATC 2 cut(s) 107, 240
Sau96I GGNCC 4 cut(s) 73, 256, 398, 494
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 2 cut(s) 187, 517
SfaNI GCATC 3 cut(s) 46, 152, 214
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 144
SinI GGWCC 4 cut(s) 73, 256, 398, 494
SlaI CTCGAG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 144, 530
SmoI CTYRAG 2 cut(s) 144, 530
Sse9I AATT 1 cut(s) 486
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 2 cut(s) 442, 445
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 25, 362
TaqI TCGA 3 cut(s) 145, 315, 333
TasI AATT 1 cut(s) 486
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 5 cut(s) 30, 75, 90, 356, 411
TseI GCWGC 2 cut(s) 35, 385
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 5 cut(s) 30, 75, 90, 356, 411
Van91I CCANNNNNTGG 1 cut(s) 395
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 4 cut(s) 73, 256, 398, 494
XhoI CTCGAG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.