Rh2AG548800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018496
Physical Location & Seq
Reverse (-)
77863396 .. 77864134
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG548800.1

Sequence Viewer

Length: 330 bp
ATGAAGTCTCTCCTCTCTGATTTCCGCTCTTGCTACCGCGCGGGGACGTCGAAGCGGCGACCACCTTCTCCGGCTCAGGAGGCGCGTACTGATCACGCGCCGCCCTCGCGGAGGTTGAGGTCCCCGAAATTGGAGTCGTCTGCAGGTACGCAGTGGCGGCCGGCTCTCAACGCAATCTTGGAGGATGGGGATGCTACTCCTAATAGTTCTAAAGGCAGATCATCATCCAAGACTACAGTGGCCAAGTCCCGCAGTGTTGCTAGCATTGAACAAGTCAACGCCCCGGTGATGATTCCGGCGGCTTACTGGGCGACGCCGTTTATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.88

Weight (kDa)

10.65

Isoelectric Point (pI)

89.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018496)

Species Orthologous Gene IDs
malus_domestica MD09G1103100.v1.1
prunus_persica Prupe.3G222700_v2.0.a1
pyrus_communis pycom09g02630
rosa_laevigata RLG00000021219
rosa_roxburghii Rroxscaffold_2G00089770
rosa_rugosa Rorug02G0483500
rosa_samantha Rh2AG548800 Rh2BG562500 Rh2CG533100 Rh2DG571200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 134
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 5 cut(s) 39, 41, 85, 98, 109
AciI CCGC 9 cut(s) 25, 37, 41, 55, 101, 109, 157, 250, 299
AcoI YGGCCR 2 cut(s) 158, 240
AcyI GRCGYC 2 cut(s) 47, 314
AfaI GTAC 2 cut(s) 88, 148
AfiI CCNNNNNNNGG 2 cut(s) 111, 130
AgsI TTSAA 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 2 cut(s) 158, 240
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 3 cut(s) 41, 85, 100
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 298
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 242
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 301
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 141, 234
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 4 cut(s) 56, 101, 158, 300
BlsI GCNGC 4 cut(s) 57, 102, 159, 301
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 181
BmtI GCTAGC 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 223
BsaHI GRCGYC 2 cut(s) 47, 314
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 130
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 3 cut(s) 190, 196, 224
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 111, 130
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 311
BseX3I CGGCCG 1 cut(s) 158
Bsh1236I CGCG 5 cut(s) 39, 41, 85, 98, 109
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 160, 242
BsiEI CGRYCG 1 cut(s) 161
BsiSI CCGG 4 cut(s) 71, 161, 284, 296
BslFI GGGAC 3 cut(s) 58, 106, 232
BslI CCNNNNNNNGG 2 cut(s) 111, 130
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 3 cut(s) 58, 106, 232
BsnI GGCC 2 cut(s) 160, 242
Bsp143I GATC 2 cut(s) 91, 218
BspACI CCGC 9 cut(s) 25, 37, 41, 55, 101, 109, 157, 250, 299
BspANI GGCC 2 cut(s) 160, 242
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 5 cut(s) 39, 41, 85, 98, 109
BspLI GGNNCC 1 cut(s) 122
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 134
BspOI GCTAGC 1 cut(s) 264
BsrBI CCGCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 91, 218
BssNI GRCGYC 2 cut(s) 47, 314
Bst4CI ACNGT 1 cut(s) 238
BstACI GRCGYC 2 cut(s) 47, 314
BstC8I GCNNGC 2 cut(s) 162, 262
BstDEI CTNAG 1 cut(s) 75
BstENI CCTNNNNNAGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 190, 196, 224
BstFNI CGCG 5 cut(s) 39, 41, 85, 98, 109
BstHHI GCGC 3 cut(s) 41, 85, 100
BstKTI GATC 2 cut(s) 94, 221
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 91, 218
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 5 cut(s) 80, 106, 157, 170, 308
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 2 cut(s) 141, 234
BstUI CGCG 5 cut(s) 39, 41, 85, 98, 109
BstZI CGGCCG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 160, 242
BtsCI GGATG 3 cut(s) 190, 196, 224
BtsI GCAGTG 2 cut(s) 158, 259
BtsIMutI CAGTG 3 cut(s) 158, 243, 259
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 162, 262
CfoI GCGC 3 cut(s) 41, 85, 100
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 87, 147
CviJI RGCY 5 cut(s) 74, 160, 164, 242, 302
CviKI_1 RGCY 5 cut(s) 74, 160, 164, 242, 302
CviQI GTAC 2 cut(s) 87, 147
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 93, 220
DpnII GATC 2 cut(s) 91, 218
EaeI YGGCCR 2 cut(s) 158, 240
EagI CGGCCG 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 120
FaiI YATR 1 cut(s) 323
FaqI GGGAC 3 cut(s) 58, 106, 232
FauI CCCGC 2 cut(s) 34, 257
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 56, 101, 158, 300
FokI GGATG 3 cut(s) 197, 203, 211
Fsp4HI GCNGC 4 cut(s) 56, 101, 158, 300
FspBI CTAG 1 cut(s) 261
GlaI GCGC 3 cut(s) 40, 84, 99
GluI GCNGC 4 cut(s) 56, 101, 158, 300
HaeIII GGCC 2 cut(s) 160, 242
HapII CCGG 4 cut(s) 71, 161, 284, 296
HgaI GACGC 1 cut(s) 322
HhaI GCGC 3 cut(s) 41, 85, 100
Hin1I GRCGYC 2 cut(s) 47, 314
Hin6I GCGC 3 cut(s) 39, 83, 98
HinP1I GCGC 3 cut(s) 39, 83, 98
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 2 cut(s) 134, 292
HpaII CCGG 4 cut(s) 71, 161, 284, 296
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 19, 329
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 52, 316
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 106, 157, 170, 308
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 2 cut(s) 47, 314
HspAI GCGC 3 cut(s) 39, 83, 98
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 91, 218
LpnPI CCDG 7 cut(s) 62, 84, 129, 174, 292, 297, 309
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 47
MalI GATC 2 cut(s) 93, 220
MbiI CCGCTC 1 cut(s) 27
MboI GATC 2 cut(s) 91, 218
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 1 cut(s) 128
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 6 cut(s) 23, 73, 105, 111, 115, 175
Mox20I TGGCCA 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 160
MscI TGGCCA 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 4 cut(s) 71, 161, 284, 296
MspR9I CCNGG 1 cut(s) 284
MvnI CGCG 5 cut(s) 39, 41, 85, 98, 109
MwoI GCNNNNNNNGC 5 cut(s) 80, 106, 157, 170, 308
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 284
NdeII GATC 2 cut(s) 91, 218
NgoMIV GCCGGC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 4 cut(s) 57, 102, 159, 301
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 120
PspPPI RGGWCCY 1 cut(s) 120
PstI CTGCAG 1 cut(s) 145
RsaI GTAC 2 cut(s) 88, 148
RsaNI GTAC 2 cut(s) 87, 147
SatI GCNGC 4 cut(s) 56, 101, 158, 300
Sau3AI GATC 2 cut(s) 91, 218
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 284
SetI ASST 5 cut(s) 50, 67, 116, 122, 148
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 2 cut(s) 141, 234
SinI GGWCC 1 cut(s) 120
Sse9I AATT 1 cut(s) 128
SsiI CCGC 9 cut(s) 25, 37, 41, 55, 101, 109, 157, 250, 299
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 128
TauI GCSGC 4 cut(s) 58, 103, 160, 302
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 3 cut(s) 158, 243, 259
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 158, 243, 259
VpaK11BI GGWCC 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 1 cut(s) 261
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.