Prupe.3G222700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018496
Physical Location & Seq
Reverse (-)
22302807 .. 22303684
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G222700.1

Sequence Viewer

Length: 330 bp
ATGAAGTTCCTGTTGGAGTTGGGGTCGTGTTACCGTTCGTCGTCGTCGTCGAAGCAAACTCAAGATCATGAGATGATCAGAAGCCGTGTGAGAAGATCGAAGTCTGCAGAGTCTGCTCAACAATGGAGGCCAGCTCTTGTTGCAATCTCAGAGGATGGGGTTGCTTCTGGTCACGAGGGTAAGGCTCAGTCTGAGAAGATATCGTCCAAGAAAGGACGTAAGGCCAAGGCTCGAAGCCTCAGTTGCACTAATCACGACGAGTTCTCCGGGGGAAACAATGTGCCTGTGTTCGTACCTGCAGCGTTTGCAGCAACCTCCTTCATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.9

Weight (kDa)

9.86

Isoelectric Point (pI)

72.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018496)

Species Orthologous Gene IDs
malus_domestica MD09G1103100.v1.1
prunus_persica Prupe.3G222700_v2.0.a1
pyrus_communis pycom09g02630
rosa_laevigata RLG00000021219
rosa_roxburghii Rroxscaffold_2G00089770
rosa_rugosa Rorug02G0483500
rosa_samantha Rh2AG548800 Rh2BG562500 Rh2CG533100 Rh2DG571200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 304
AfaI GTAC 1 cut(s) 294
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 2 cut(s) 128, 222
ApeKI GCWGC 2 cut(s) 299, 308
AsuC2I CCSGG 1 cut(s) 268
BauI CACGAG 1 cut(s) 173
BbvI GCAGC 2 cut(s) 311, 320
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 69
BclI TGATCA 1 cut(s) 75
BcnI CCSGG 1 cut(s) 268
BfmI CTRYAG 2 cut(s) 105, 297
BfuAI ACCTGC 1 cut(s) 304
BisI GCNGC 2 cut(s) 300, 309
BlsI GCNGC 2 cut(s) 301, 310
Bme1390I CCNGG 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 268
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpuEI CTTGAG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 225, 267
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 248, 278
BseDI CCNNGG 2 cut(s) 225, 267
BseGI GGATG 1 cut(s) 160
BseMII CTCAG 4 cut(s) 162, 183, 200, 253
BseXI GCAGC 2 cut(s) 311, 320
BshFI GGCC 2 cut(s) 130, 224
BsiSI CCGG 1 cut(s) 267
BsnI GGCC 2 cut(s) 130, 224
Bsp143I GATC 3 cut(s) 64, 75, 95
BspANI GGCC 2 cut(s) 130, 224
BspCNI CTCAG 4 cut(s) 161, 184, 199, 252
BspHI TCATGA 1 cut(s) 67
BspMAI CTGCAG 2 cut(s) 109, 301
BspMI ACCTGC 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 225, 267
BssMI GATC 3 cut(s) 64, 75, 95
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 35
BstAPI GCANNNNNTGC 2 cut(s) 113, 305
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 4 cut(s) 148, 186, 192, 239
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 3 cut(s) 67, 78, 98
BstMBI GATC 3 cut(s) 64, 75, 95
BstMWI GCNNNNNNNGC 5 cut(s) 113, 140, 243, 305, 308
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 105, 297
BstV1I GCAGC 2 cut(s) 311, 320
BsuRI GGCC 2 cut(s) 130, 224
BtsCI GGATG 1 cut(s) 160
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 67
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 68, 322
CviJI RGCY 7 cut(s) 84, 130, 134, 185, 224, 230, 237
CviKI_1 RGCY 7 cut(s) 84, 130, 134, 185, 224, 230, 237
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 148, 186, 192, 239
DpnI GATC 3 cut(s) 66, 77, 97
DpnII GATC 3 cut(s) 64, 75, 95
Eco130I CCWWGG 1 cut(s) 225
Eco32I GATATC 1 cut(s) 201
EcoRV GATATC 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 71, 325
FaiI YATR 2 cut(s) 69, 323
FatI CATG 2 cut(s) 67, 321
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 300, 309
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 300, 309
GluI GCNGC 2 cut(s) 300, 309
HaeIII GGCC 2 cut(s) 130, 224
HapII CCGG 1 cut(s) 267
Hin1II CATG 2 cut(s) 71, 325
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 267
Hpy188I TCNGA 4 cut(s) 80, 151, 193, 329
Hpy188III TCNNGA 4 cut(s) 62, 68, 173, 254
Hpy99I CGWCG 5 cut(s) 43, 46, 49, 52, 260
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 107, 143, 246, 299, 308
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 140, 243, 305, 308
HpyF3I CTNAG 4 cut(s) 148, 186, 192, 239
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 2 cut(s) 71, 325
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 3 cut(s) 64, 75, 95
LpnPI CCDG 6 cut(s) 23, 144, 153, 280, 297, 309
Lsp1109I GCAGC 2 cut(s) 311, 320
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 29, 170
MalI GATC 3 cut(s) 66, 77, 97
MboI GATC 3 cut(s) 64, 75, 95
MboII GAAGA 2 cut(s) 105, 208
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 5 cut(s) 120, 145, 169, 248, 325
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 268
MwoI GCNNNNNNNGC 5 cut(s) 113, 140, 243, 305, 308
NciI CCSGG 1 cut(s) 268
NdeII GATC 3 cut(s) 64, 75, 95
NlaIII CATG 2 cut(s) 71, 325
NmuCI GTSAC 1 cut(s) 170
PagI TCATGA 1 cut(s) 67
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 47
PkrI GCNGC 2 cut(s) 301, 310
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PstI CTGCAG 2 cut(s) 109, 301
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SatI GCNGC 2 cut(s) 300, 309
Sau3AI GATC 3 cut(s) 64, 75, 95
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 268
SetI ASST 4 cut(s) 136, 220, 298, 317
SfcI CTRYAG 2 cut(s) 105, 297
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 220
TaqI TCGA 3 cut(s) 50, 98, 232
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 299, 308
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 17, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.