MMS19 nucleotide excision repair protein homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G48120 AT5G48120 AT5G48120 |
| fragaria_vesca | FvH4_6g32400 FvH4_6g32400 FvH4_6g32400 FvH4_6g32400 FvH4_6g32400 FvH4_6g32400 FvH4_6g32400 FvH4_6g32400 FvH4_6g32400 |
| malus_domestica | MD09G1202800.v1.1 |
| prunus_persica | Prupe.3G059000_v2.0.a1 Prupe.3G059000_v2.0.a1 |
| pyrus_communis | pycom09g11970 |
| rosa_chinensis | RchiOBHm_Chr2g0140541 |
| rosa_laevigata | RLG00000019876 |
| rosa_multiflora | Rmu_sc0002490.1_g000025 |
| rosa_roxburghii | Rroxscaffold_153G00436650 Rroxscaffold_2G00104710 |
| rosa_rugosa | Rorug02G0363500 |
| rosa_samantha | Rh2AG414400 Rh2BG424300 Rh2CG400800 Rh2DG434300 |
| rosa_wichuraiana | Rw2G033940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1143, 1197 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 989 |
| AccI | GTMKAC | 2 cut(s) | 45, 3415 |
| AciI | CCGC | 5 cut(s) | 1472, 2041, 2354, 2932, 3254 |
| AclWI | GGATC | 4 cut(s) | 536, 551, 2012, 3371 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1506, 2915 |
| AcsI | RAATTY | 9 cut(s) | 85, 1078, 1288, 1318, 1403, 2497, 2742, 2897, 2977 |
| AcuI | CTGAAG | 4 cut(s) | 996, 1445, 1974, 2898 |
| AcyI | GRCGYC | 1 cut(s) | 3428 |
| AdeI | CACNNNGTG | 1 cut(s) | 509 |
| AfaI | GTAC | 5 cut(s) | 41, 1887, 2476, 2512, 3348 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 202, 739, 989, 1157, 2671, 2913 |
| AflIII | ACRYGT | 2 cut(s) | 48, 1445 |
| AjiI | CACGTC | 1 cut(s) | 51 |
| AjnI | CCWGG | 4 cut(s) | 1582, 2100, 2514, 2670 |
| Alw21I | GWGCWC | 4 cut(s) | 187, 316, 1354, 1707 |
| Alw26I | GTCTC | 6 cut(s) | 1800, 1829, 1846, 2289, 3236, 3269 |
| Alw44I | GTGCAC | 2 cut(s) | 312, 1703 |
| AlwI | GGATC | 4 cut(s) | 536, 551, 2012, 3371 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1570, 1844 |
| Ama87I | CYCGRG | 2 cut(s) | 186, 1271 |
| AoxI | GGCC | 4 cut(s) | 3, 1506, 1902, 2915 |
| ApaLI | GTGCAC | 2 cut(s) | 312, 1703 |
| ApeKI | GCWGC | 8 cut(s) | 74, 433, 1217, 2123, 2653, 2821, 2843, 3310 |
| ApoI | RAATTY | 9 cut(s) | 85, 1078, 1288, 1318, 1403, 2497, 2742, 2897, 2977 |
| AseI | ATTAAT | 1 cut(s) | 3225 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 21, 2112 |
| AspLEI | GCGC | 1 cut(s) | 483 |
| AspS9I | GGNCC | 1 cut(s) | 8 |
| AsuHPI | GGTGA | 4 cut(s) | 148, 521, 2959, 3226 |
| AsuNHI | GCTAGC | 2 cut(s) | 1127, 1684 |
| AvaI | CYCGRG | 2 cut(s) | 186, 1271 |
| AvaII | GGWCC | 1 cut(s) | 8 |
| BaeGI | GKGCMC | 3 cut(s) | 316, 1707, 2671 |
| BalI | TGGCCA | 1 cut(s) | 1508 |
| BanII | GRGCYC | 1 cut(s) | 1354 |
| BauI | CACGAG | 2 cut(s) | 101, 1733 |
| Bbv12I | GWGCWC | 4 cut(s) | 187, 316, 1354, 1707 |
| BbvI | GCAGC | 8 cut(s) | 61, 445, 1204, 2135, 2665, 2830, 2833, 3297 |
| BccI | CCATC | 7 cut(s) | 139, 492, 539, 628, 1130, 2125, 3089 |
| BceAI | ACGGC | 1 cut(s) | 2930 |
| BciT130I | CCWGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| BciVI | GTATCC | 2 cut(s) | 203, 1199 |
| BclI | TGATCA | 1 cut(s) | 2460 |
| BcoDI | GTCTC | 6 cut(s) | 1800, 1829, 1846, 2289, 3236, 3269 |
| BfaI | CTAG | 7 cut(s) | 239, 351, 1040, 1128, 1685, 2804, 3155 |
| BfmI | CTRYAG | 2 cut(s) | 413, 2844 |
| BfuI | GTATCC | 2 cut(s) | 203, 1199 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2132 |
| BglII | AGATCT | 2 cut(s) | 649, 2999 |
| BisI | GCNGC | 8 cut(s) | 75, 434, 1218, 2124, 2654, 2822, 2844, 3311 |
| BlsI | GCNGC | 8 cut(s) | 76, 435, 1219, 2125, 2655, 2823, 2845, 3312 |
| Bme1390I | CCNGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| Bme18I | GGWCC | 1 cut(s) | 8 |
| BmeT110I | CYCGRG | 2 cut(s) | 186, 1271 |
| BmgBI | CACGTC | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 1 cut(s) | 8 |
| BmrFI | CCNGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| BmrI | ACTGGG | 1 cut(s) | 515 |
| BmtI | GCTAGC | 2 cut(s) | 1131, 1688 |
| BmuI | ACTGGG | 1 cut(s) | 515 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 717, 749, 1826, 1858 |
| BpmI | CTGGAG | 3 cut(s) | 1605, 1853, 2037 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2442 |
| BpuEI | CTTGAG | 3 cut(s) | 824, 2045, 3079 |
| BsaAI | YACGTR | 1 cut(s) | 308 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1728 |
| BsaHI | GRCGYC | 1 cut(s) | 3428 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 202, 739, 989, 1157, 2671, 2913 |
| Bse1I | ACTGG | 7 cut(s) | 291, 372, 510, 1836, 2020, 2435, 2766 |
| Bse3DI | GCAATG | 7 cut(s) | 473, 546, 562, 794, 1485, 1670, 2142 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1728 |
| BseBI | CCWGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| BseGI | GGATG | 9 cut(s) | 156, 177, 484, 550, 674, 1729, 2251, 2359, 3100 |
| BseJI | GATNNNNATC | 1 cut(s) | 1728 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 202, 739, 989, 1157, 2671, 2913 |
| BseMI | GCAATG | 7 cut(s) | 473, 546, 562, 794, 1485, 1670, 2142 |
| BseMII | CTCAG | 4 cut(s) | 329, 1836, 2456, 3297 |
| BseNI | ACTGG | 7 cut(s) | 291, 372, 510, 1836, 2020, 2435, 2766 |
| BseRI | GAGGAG | 1 cut(s) | 355 |
| BseSI | GKGCMC | 3 cut(s) | 316, 1707, 2671 |
| BseXI | GCAGC | 8 cut(s) | 61, 445, 1204, 2135, 2665, 2830, 2833, 3297 |
| BseYI | CCCAGC | 1 cut(s) | 66 |
| BsgI | GTGCAG | 3 cut(s) | 850, 1554, 3006 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1186 |
| BshFI | GGCC | 4 cut(s) | 5, 1508, 1904, 2917 |
| BsiEI | CGRYCG | 1 cut(s) | 1186 |
| BsiHKAI | GWGCWC | 4 cut(s) | 187, 316, 1354, 1707 |
| BsiHKCI | CYCGRG | 2 cut(s) | 186, 1271 |
| BsiSI | CCGG | 1 cut(s) | 6 |
| BsiWI | CGTACG | 1 cut(s) | 39 |
| BslFI | GGGAC | 2 cut(s) | 394, 1972 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 202, 739, 989, 1157, 2671, 2913 |
| BsmAI | GTCTC | 6 cut(s) | 1800, 1829, 1846, 2289, 3236, 3269 |
| BsmFI | GGGAC | 2 cut(s) | 394, 1972 |
| BsmI | GAATGC | 5 cut(s) | 1982, 2068, 2091, 2824, 3214 |
| BsnI | GGCC | 4 cut(s) | 5, 1508, 1904, 2917 |
| BsoBI | CYCGRG | 2 cut(s) | 186, 1271 |
| Bsp1286I | GDGCHC | 5 cut(s) | 187, 316, 1354, 1707, 2671 |
| Bsp1407I | TGTACA | 1 cut(s) | 1885 |
| Bsp143I | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| Bsp19I | CCATGG | 4 cut(s) | 1933, 2000, 2241, 2784 |
| BspACI | CCGC | 5 cut(s) | 1472, 2041, 2354, 2932, 3254 |
| BspANI | GGCC | 4 cut(s) | 5, 1508, 1904, 2917 |
| BspCNI | CTCAG | 4 cut(s) | 330, 1837, 2455, 3298 |
| BspHI | TCATGA | 2 cut(s) | 1798, 2716 |
| BspMAI | CTGCAG | 1 cut(s) | 2848 |
| BspOI | GCTAGC | 2 cut(s) | 1131, 1688 |
| BspPI | GGATC | 4 cut(s) | 536, 551, 2012, 3371 |
| BspQI | GCTCTTC | 1 cut(s) | 2103 |
| BsrDI | GCAATG | 7 cut(s) | 473, 546, 562, 794, 1485, 1670, 2142 |
| BsrGI | TGTACA | 1 cut(s) | 1885 |
| BsrI | ACTGG | 7 cut(s) | 291, 372, 510, 1836, 2020, 2435, 2766 |
| BssMI | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| BssNI | GRCGYC | 1 cut(s) | 3428 |
| BssSI | CACGAG | 2 cut(s) | 101, 1733 |
| BssT1I | CCWWGG | 7 cut(s) | 1503, 1933, 2000, 2241, 2484, 2632, 2784 |
| Bst2BI | CACGAG | 2 cut(s) | 101, 1733 |
| Bst2UI | CCWGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| Bst4CI | ACNGT | 8 cut(s) | 1111, 1552, 1840, 1985, 2201, 2510, 2813, 3146 |
| Bst6I | CTCTTC | 4 cut(s) | 1893, 2103, 2260, 2947 |
| BstACI | GRCGYC | 1 cut(s) | 3428 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 902, 3262 |
| BstAUI | TGTACA | 1 cut(s) | 1885 |
| BstBAI | YACGTR | 1 cut(s) | 308 |
| BstDEI | CTNAG | 7 cut(s) | 338, 1651, 1751, 1845, 1877, 2442, 3306 |
| BstDSI | CCRYGG | 4 cut(s) | 1933, 2000, 2241, 2784 |
| BstEII | GGTNACC | 1 cut(s) | 1048 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 737, 1155 |
| BstF5I | GGATG | 9 cut(s) | 156, 177, 484, 550, 674, 1729, 2251, 2359, 3100 |
| BstHHI | GCGC | 1 cut(s) | 483 |
| BstKTI | GATC | 9 cut(s) | 93, 531, 559, 652, 2007, 2463, 2626, 3002, 3379 |
| BstMAI | GTCTC | 6 cut(s) | 1800, 1829, 1846, 2289, 3236, 3269 |
| BstMBI | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| BstMCI | CGRYCG | 1 cut(s) | 1186 |
| BstNI | CCWGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| BstNSI | RCATGY | 7 cut(s) | 905, 935, 1178, 1386, 1442, 1449, 1459 |
| BstPI | GGTNACC | 1 cut(s) | 1048 |
| BstSCI | CCNGG | 4 cut(s) | 1582, 2100, 2514, 2670 |
| BstSFI | CTRYAG | 2 cut(s) | 413, 2844 |
| BstSLI | GKGCMC | 3 cut(s) | 316, 1707, 2671 |
| BstV1I | GCAGC | 8 cut(s) | 61, 445, 1204, 2135, 2665, 2830, 2833, 3297 |
| BstX2I | RGATCY | 4 cut(s) | 528, 556, 649, 2999 |
| BstYI | RGATCY | 4 cut(s) | 528, 556, 649, 2999 |
| BsuI | GTATCC | 2 cut(s) | 203, 1199 |
| BsuRI | GGCC | 4 cut(s) | 5, 1508, 1904, 2917 |
| BtgI | CCRYGG | 4 cut(s) | 1933, 2000, 2241, 2784 |
| BtgZI | GCGATG | 1 cut(s) | 1108 |
| BtrI | CACGTC | 1 cut(s) | 51 |
| BtsCI | GGATG | 9 cut(s) | 156, 177, 484, 550, 674, 1729, 2251, 2359, 3100 |
| BtsI | GCAGTG | 1 cut(s) | 862 |
| BtsIMutI | CAGTG | 6 cut(s) | 379, 503, 862, 930, 2067, 2206 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1570, 1844 |
| CciI | TCATGA | 2 cut(s) | 1798, 2716 |
| CfoI | GCGC | 1 cut(s) | 483 |
| Cfr13I | GGNCC | 1 cut(s) | 8 |
| CseI | GACGC | 1 cut(s) | 3417 |
| Csp6I | GTAC | 5 cut(s) | 40, 1886, 2475, 2511, 3347 |
| CviQI | GTAC | 5 cut(s) | 40, 1886, 2475, 2511, 3347 |
| DdeI | CTNAG | 7 cut(s) | 338, 1651, 1751, 1845, 1877, 2442, 3306 |
| DpnI | GATC | 9 cut(s) | 92, 530, 558, 651, 2006, 2462, 2625, 3001, 3378 |
| DpnII | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| DraI | TTTAAA | 1 cut(s) | 2580 |
| DraIII | CACNNNGTG | 1 cut(s) | 509 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1506, 2915 |
| Eam1104I | CTCTTC | 4 cut(s) | 1893, 2103, 2260, 2947 |
| EarI | CTCTTC | 4 cut(s) | 1893, 2103, 2260, 2947 |
| Ecl136II | GAGCTC | 1 cut(s) | 1352 |
| Eco130I | CCWWGG | 7 cut(s) | 1503, 1933, 2000, 2241, 2484, 2632, 2784 |
| Eco24I | GRGCYC | 1 cut(s) | 1354 |
| Eco32I | GATATC | 1 cut(s) | 1591 |
| Eco47I | GGWCC | 1 cut(s) | 8 |
| Eco53kI | GAGCTC | 1 cut(s) | 1352 |
| Eco57I | CTGAAG | 4 cut(s) | 996, 1445, 1974, 2898 |
| Eco88I | CYCGRG | 2 cut(s) | 186, 1271 |
| Eco91I | GGTNACC | 1 cut(s) | 1048 |
| EcoICRI | GAGCTC | 1 cut(s) | 1352 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 737, 1155 |
| EcoO65I | GGTNACC | 1 cut(s) | 1048 |
| EcoRI | GAATTC | 3 cut(s) | 85, 1318, 2497 |
| EcoRII | CCWGG | 4 cut(s) | 1582, 2100, 2514, 2670 |
| EcoRV | GATATC | 1 cut(s) | 1591 |
| EcoT14I | CCWWGG | 7 cut(s) | 1503, 1933, 2000, 2241, 2484, 2632, 2784 |
| EcoT22I | ATGCAT | 2 cut(s) | 1729, 2854 |
| EcoT38I | GRGCYC | 1 cut(s) | 1354 |
| ErhI | CCWWGG | 7 cut(s) | 1503, 1933, 2000, 2241, 2484, 2632, 2784 |
| FaqI | GGGAC | 2 cut(s) | 394, 1972 |
| FauI | CCCGC | 1 cut(s) | 3261 |
| FauNDI | CATATG | 2 cut(s) | 1872, 3258 |
| FbaI | TGATCA | 1 cut(s) | 2460 |
| FblI | GTMKAC | 2 cut(s) | 45, 3415 |
| Fnu4HI | GCNGC | 8 cut(s) | 75, 434, 1218, 2124, 2654, 2822, 2844, 3311 |
| FokI | GGATG | 9 cut(s) | 163, 164, 471, 557, 681, 1736, 2258, 2346, 3107 |
| FriOI | GRGCYC | 1 cut(s) | 1354 |
| Fsp4HI | GCNGC | 8 cut(s) | 75, 434, 1218, 2124, 2654, 2822, 2844, 3311 |
| FspBI | CTAG | 7 cut(s) | 239, 351, 1040, 1128, 1685, 2804, 3155 |
| GlaI | GCGC | 1 cut(s) | 482 |
| GluI | GCNGC | 8 cut(s) | 75, 434, 1218, 2124, 2654, 2822, 2844, 3311 |
| GsaI | CCCAGC | 1 cut(s) | 70 |
| GsuI | CTGGAG | 3 cut(s) | 1605, 1853, 2037 |
| HaeIII | GGCC | 4 cut(s) | 5, 1508, 1904, 2917 |
| HapII | CCGG | 1 cut(s) | 6 |
| HgaI | GACGC | 1 cut(s) | 3417 |
| HhaI | GCGC | 1 cut(s) | 483 |
| Hin1I | GRCGYC | 1 cut(s) | 3428 |
| Hin6I | GCGC | 1 cut(s) | 481 |
| HinP1I | GCGC | 1 cut(s) | 481 |
| HincII | GTYRAC | 4 cut(s) | 46, 576, 2188, 3416 |
| HindII | GTYRAC | 4 cut(s) | 46, 576, 2188, 3416 |
| HindIII | AAGCTT | 3 cut(s) | 423, 446, 2141 |
| HpaI | GTTAAC | 1 cut(s) | 576 |
| HpaII | CCGG | 1 cut(s) | 6 |
| HphI | GGTGA | 4 cut(s) | 148, 521, 2959, 3226 |
| Hpy166II | GTNNAC | 8 cut(s) | 46, 314, 576, 765, 1562, 1705, 2188, 3416 |
| Hpy8I | GTNNAC | 8 cut(s) | 46, 314, 576, 765, 1562, 1705, 2188, 3416 |
| Hpy99I | CGWCG | 2 cut(s) | 47, 3420 |
| HpyAV | CCTTC | 8 cut(s) | 72, 206, 733, 1687, 1738, 1949, 2426, 2762 |
| HpyCH4III | ACNGT | 8 cut(s) | 1111, 1552, 1840, 1985, 2201, 2510, 2813, 3146 |
| HpyCH4IV | ACGT | 5 cut(s) | 42, 50, 307, 2280, 2779 |
| HpyF3I | CTNAG | 7 cut(s) | 338, 1651, 1751, 1845, 1877, 2442, 3306 |
| HpySE526I | ACGT | 5 cut(s) | 42, 50, 307, 2280, 2779 |
| Hsp92I | GRCGYC | 1 cut(s) | 3428 |
| HspAI | GCGC | 1 cut(s) | 481 |
| Ksp22I | TGATCA | 1 cut(s) | 2460 |
| KspAI | GTTAAC | 1 cut(s) | 576 |
| Kzo9I | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| LguI | GCTCTTC | 1 cut(s) | 2103 |
| LmnI | GCTCC | 4 cut(s) | 881, 1349, 1423, 2154 |
| Lsp1109I | GCAGC | 8 cut(s) | 61, 445, 1204, 2135, 2665, 2830, 2833, 3297 |
| MaeI | CTAG | 7 cut(s) | 239, 351, 1040, 1128, 1685, 2804, 3155 |
| MaeII | ACGT | 5 cut(s) | 42, 50, 307, 2280, 2779 |
| MaeIII | GTNAC | 5 cut(s) | 671, 1048, 1170, 2734, 2790 |
| MalI | GATC | 9 cut(s) | 92, 530, 558, 651, 2006, 2462, 2625, 3001, 3378 |
| MboI | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| MfeI | CAATTG | 1 cut(s) | 3432 |
| MflI | RGATCY | 4 cut(s) | 528, 556, 649, 2999 |
| MhlI | GDGCHC | 5 cut(s) | 187, 316, 1354, 1707, 2671 |
| MlsI | TGGCCA | 1 cut(s) | 1508 |
| MluNI | TGGCCA | 1 cut(s) | 1508 |
| MlyI | GAGTC | 5 cut(s) | 416, 704, 1745, 2623, 3234 |
| MmeI | TCCRAC | 2 cut(s) | 2287, 3072 |
| Mox20I | TGGCCA | 1 cut(s) | 1508 |
| Mph1103I | ATGCAT | 2 cut(s) | 1729, 2854 |
| MroXI | GAANNNNTTC | 2 cut(s) | 21, 2112 |
| MscI | TGGCCA | 1 cut(s) | 1508 |
| MslI | CAYNNNNRTG | 8 cut(s) | 489, 1518, 1652, 1675, 2313, 2354, 2609, 2864 |
| Msp20I | TGGCCA | 1 cut(s) | 1508 |
| MspA1I | CMGCKG | 1 cut(s) | 2932 |
| MspI | CCGG | 1 cut(s) | 6 |
| MspR9I | CCNGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| MunI | CAATTG | 1 cut(s) | 3432 |
| Mva1269I | GAATGC | 5 cut(s) | 1982, 2068, 2091, 2824, 3214 |
| MvaI | CCWGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| NcoI | CCATGG | 4 cut(s) | 1933, 2000, 2241, 2784 |
| NdeI | CATATG | 2 cut(s) | 1872, 3258 |
| NdeII | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| NheI | GCTAGC | 2 cut(s) | 1127, 1684 |
| NsiI | ATGCAT | 2 cut(s) | 1729, 2854 |
| NspI | RCATGY | 7 cut(s) | 905, 935, 1178, 1386, 1442, 1449, 1459 |
| PacI | TTAATTAA | 1 cut(s) | 3225 |
| PaeI | GCATGC | 1 cut(s) | 1386 |
| PaeR7I | CTCGAG | 2 cut(s) | 186, 1271 |
| PagI | TCATGA | 2 cut(s) | 1798, 2716 |
| PciI | ACATGT | 1 cut(s) | 1445 |
| PciSI | GCTCTTC | 1 cut(s) | 2103 |
| PctI | GAATGC | 5 cut(s) | 1982, 2068, 2091, 2824, 3214 |
| PdmI | GAANNNNTTC | 2 cut(s) | 21, 2112 |
| Pfl23II | CGTACG | 1 cut(s) | 39 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 989 |
| PfoI | TCCNGGA | 1 cut(s) | 2100 |
| PkrI | GCNGC | 8 cut(s) | 76, 435, 1219, 2125, 2655, 2823, 2845, 3312 |
| PleI | GAGTC | 5 cut(s) | 415, 704, 1744, 2622, 3234 |
| PpsI | GAGTC | 5 cut(s) | 415, 704, 1744, 2622, 3234 |
| Ppu21I | YACGTR | 1 cut(s) | 308 |
| PscI | ACATGT | 1 cut(s) | 1445 |
| PshBI | ATTAAT | 1 cut(s) | 3225 |
| PsiI | TTATAA | 2 cut(s) | 1143, 1197 |
| Psp124BI | GAGCTC | 1 cut(s) | 1354 |
| Psp6I | CCWGG | 4 cut(s) | 1582, 2100, 2514, 2670 |
| PspEI | GGTNACC | 1 cut(s) | 1048 |
| PspFI | CCCAGC | 1 cut(s) | 66 |
| PspGI | CCWGG | 4 cut(s) | 1582, 2100, 2514, 2670 |
| PspLI | CGTACG | 1 cut(s) | 39 |
| PspPI | GGNCC | 1 cut(s) | 8 |
| PspXI | VCTCGAGB | 1 cut(s) | 186 |
| PstI | CTGCAG | 1 cut(s) | 2848 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1570, 1844 |
| PsuI | RGATCY | 4 cut(s) | 528, 556, 649, 2999 |
| RsaI | GTAC | 5 cut(s) | 41, 1887, 2476, 2512, 3348 |
| RsaNI | GTAC | 5 cut(s) | 40, 1886, 2475, 2511, 3347 |
| RseI | CAYNNNNRTG | 8 cut(s) | 489, 1518, 1652, 1675, 2313, 2354, 2609, 2864 |
| SacI | GAGCTC | 1 cut(s) | 1354 |
| SalI | GTCGAC | 2 cut(s) | 44, 3414 |
| SapI | GCTCTTC | 1 cut(s) | 2103 |
| SatI | GCNGC | 8 cut(s) | 75, 434, 1218, 2124, 2654, 2822, 2844, 3311 |
| Sau3AI | GATC | 9 cut(s) | 90, 528, 556, 649, 2004, 2460, 2623, 2999, 3376 |
| Sau96I | GGNCC | 1 cut(s) | 8 |
| SchI | GAGTC | 5 cut(s) | 416, 704, 1745, 2623, 3234 |
| ScrFI | CCNGG | 4 cut(s) | 1584, 2102, 2516, 2672 |
| SduI | GDGCHC | 5 cut(s) | 187, 316, 1354, 1707, 2671 |
| SfcI | CTRYAG | 2 cut(s) | 413, 2844 |
| Sfr274I | CTCGAG | 2 cut(s) | 186, 1271 |
| SinI | GGWCC | 1 cut(s) | 8 |
| SlaI | CTCGAG | 2 cut(s) | 186, 1271 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 489, 1518, 1652, 1675, 2313, 2354, 2609, 2864 |
| SmlI | CTYRAG | 5 cut(s) | 186, 803, 1271, 2024, 3058 |
| SmoI | CTYRAG | 5 cut(s) | 186, 803, 1271, 2024, 3058 |
| SphI | GCATGC | 1 cut(s) | 1386 |
| SsiI | CCGC | 5 cut(s) | 1472, 2041, 2354, 2932, 3254 |
| SspI | AATATT | 3 cut(s) | 1147, 1624, 3171 |
| SspMI | CTAG | 7 cut(s) | 239, 351, 1040, 1128, 1685, 2804, 3155 |
| SstI | GAGCTC | 1 cut(s) | 1354 |
| StyD4I | CCNGG | 4 cut(s) | 1582, 2100, 2514, 2670 |
| StyI | CCWWGG | 7 cut(s) | 1503, 1933, 2000, 2241, 2484, 2632, 2784 |
| TaaI | ACNGT | 8 cut(s) | 1111, 1552, 1840, 1985, 2201, 2510, 2813, 3146 |
| TaiI | ACGT | 5 cut(s) | 45, 53, 310, 2283, 2782 |
| TaqI | TCGA | 8 cut(s) | 45, 89, 126, 187, 737, 777, 1272, 3415 |
| TaqII | GACCGA | 1 cut(s) | 1172 |
| TatI | WGTACW | 1 cut(s) | 1885 |
| TscAI | CASTG | 6 cut(s) | 379, 510, 869, 930, 2074, 2206 |
| TseI | GCWGC | 8 cut(s) | 74, 433, 1217, 2123, 2653, 2821, 2843, 3310 |
| TspGWI | ACGGA | 7 cut(s) | 170, 182, 1646, 2507, 2654, 3094, 3201 |
| TspRI | CASTG | 6 cut(s) | 379, 510, 869, 930, 2074, 2206 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 989 |
| VneI | GTGCAC | 2 cut(s) | 312, 1703 |
| VpaK11BI | GGWCC | 1 cut(s) | 8 |
| VspI | ATTAAT | 1 cut(s) | 3225 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 737, 1155 |
| XapI | RAATTY | 9 cut(s) | 85, 1078, 1288, 1318, 1403, 2497, 2742, 2897, 2977 |
| XbaI | TCTAGA | 2 cut(s) | 1039, 2803 |
| XceI | RCATGY | 7 cut(s) | 905, 935, 1178, 1386, 1442, 1449, 1459 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2746, 3004 |
| XhoI | CTCGAG | 2 cut(s) | 186, 1271 |
| XmiI | GTMKAC | 2 cut(s) | 45, 3415 |
| XmnI | GAANNNNTTC | 2 cut(s) | 21, 2112 |
| XspI | CTAG | 7 cut(s) | 239, 351, 1040, 1128, 1685, 2804, 3155 |
| Zsp2I | ATGCAT | 2 cut(s) | 1729, 2854 |