Rorug02G0363500

MMS19 nucleotide excision repair protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006225
Physical Location & Seq
Reverse (-)
46067986 .. 46073718
5733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0363500.1

Sequence Viewer

Length: 651 bp
ATGGGCACAGAGGCCTTTGCCAGTGTTTGCATTTTTCCGCTTGCCATTAAAGCAGCTTCTAAAGAGTTGGAACGGATTGATAATGTGTTCTATACCTATGCAAATACAACTTCTGGTTTGATTGACCCAGAGGGAATCGAACGTCTTTGTTCAGATATGGAAGTTGACCCTACAGATGTAAGGGTCTTGATGCTTGCCTGGAAAATGAAGGCTGAAAAACAGGGATTCTTTACCCTGGAAGAGTGGCGAGTTGCACTTAAAGCATTAAGGGCGGATAGTTTAAGTAAATTAAAGAAGGCACTTCCAGAGCTAGAGAAAGAGGTCAGGAGGCCATCAAACTTTGTGGATTTCTATTCCTATGCATTCAGATATTGCTTAACAGAGGAGAAACAGAAGAGCATAGATATAGAGAGCATATGCCAATTATTACATATTGTTTTAGGATCTCAATACCAAGCGCAGGTTGACTCATTTGTAGAGTACTTAAAGACTCAGAATGATTACAAAGTCATAAACATGGATCAATGGATGGGCTTTTACCGATTTTGTGATGAGATAAGTTATCCAGACCTTAGCAACTACGATCCTGAACTTGCATGGCCTTTGATCCTTGACAATTTTGTTGAATGGGTGCGAGAAAAGCAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMS19_C MMS19_N

Protein Analysis

216

Amino Acids

25.23

Weight (kDa)

4.76

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin_binding PF03556 96 - 210 5e-30 Cullin binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 451
AciI CCGC 2 cut(s) 38, 272
AclWI GGATC 4 cut(s) 451, 528, 578, 601
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 1 cut(s) 626
AjnI CCWGG 2 cut(s) 197, 234
AluBI AGCT 3 cut(s) 56, 310, 648
AluI AGCT 3 cut(s) 56, 310, 648
AlwI GGATC 4 cut(s) 451, 528, 578, 601
AoxI GGCC 3 cut(s) 12, 329, 599
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 340, 523
BciT130I CCWGG 2 cut(s) 199, 236
BfaI CTAG 2 cut(s) 311, 649
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 2 cut(s) 199, 236
BmrFI CCNGG 2 cut(s) 199, 236
BmsI GCATC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 2 cut(s) 199, 236
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 534
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 398
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 3 cut(s) 14, 331, 601
BslI CCNNNNNNNGG 1 cut(s) 460
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 3 cut(s) 14, 331, 601
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 443, 520, 583, 606
BspACI CCGC 2 cut(s) 38, 272
BspANI GGCC 3 cut(s) 14, 331, 601
BspCNI CTCAG 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 4 cut(s) 451, 528, 578, 601
BspQI GCTCTTC 1 cut(s) 389
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 4 cut(s) 443, 520, 583, 606
Bst2UI CCWGG 2 cut(s) 199, 236
Bst6I CTCTTC 2 cut(s) 234, 389
BstC8I GCNNGC 2 cut(s) 42, 195
BstDEI CTNAG 2 cut(s) 492, 572
BstF5I GGATG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 446, 523, 586, 609
BstMBI GATC 4 cut(s) 443, 520, 583, 606
BstMWI GCNNNNNNNGC 4 cut(s) 50, 260, 269, 640
BstNI CCWGG 2 cut(s) 199, 236
BstSCI CCNGG 2 cut(s) 197, 234
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 3 cut(s) 14, 331, 601
BtsCI GGATG 1 cut(s) 534
BtsIMutI CAGTG 1 cut(s) 28
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 42, 195
CfoI GCGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 481
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviAII CATG 2 cut(s) 517, 597
CviJI RGCY 8 cut(s) 14, 56, 212, 310, 331, 534, 601, 648
CviKI_1 RGCY 8 cut(s) 14, 56, 212, 310, 331, 534, 601, 648
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 2 cut(s) 492, 572
DpnI GATC 4 cut(s) 445, 522, 585, 608
DpnII GATC 4 cut(s) 443, 520, 583, 606
Eam1104I CTCTTC 2 cut(s) 234, 389
EarI CTCTTC 2 cut(s) 234, 389
EciI GGCGGA 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 197, 234
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 2 cut(s) 520, 600
FatI CATG 2 cut(s) 516, 596
FauNDI CATATG 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 541
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 311, 649
GlaI GCGC 1 cut(s) 459
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 14, 331, 601
HhaI GCGC 1 cut(s) 460
Hin1II CATG 2 cut(s) 520, 600
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 2 cut(s) 166, 466
HindII GTYRAC 2 cut(s) 166, 466
HinfI GANTC 4 cut(s) 135, 225, 467, 490
Hpy166II GTNNAC 2 cut(s) 166, 466
Hpy188I TCNGA 3 cut(s) 154, 368, 495
Hpy188III TCNNGA 5 cut(s) 187, 305, 325, 566, 587
Hpy8I GTNNAC 2 cut(s) 166, 466
HpyAV CCTTC 2 cut(s) 202, 289
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 5 cut(s) 30, 101, 254, 362, 596
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 260, 269, 640
HpyF3I CTNAG 2 cut(s) 492, 572
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 520, 600
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 4 cut(s) 443, 520, 583, 606
LguI GCTCTTC 1 cut(s) 389
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 311, 649
MaeII ACGT 1 cut(s) 142
MalI GATC 4 cut(s) 445, 522, 585, 608
MboI GATC 4 cut(s) 443, 520, 583, 606
MboII GAAGA 2 cut(s) 251, 406
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 287, 422, 616
MlyI GAGTC 2 cut(s) 461, 484
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 5 cut(s) 4, 124, 313, 321, 376
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 7 cut(s) 48, 258, 266, 281, 290, 377, 485
MslI CAYNNNNRTG 1 cut(s) 515
MspR9I CCNGG 2 cut(s) 199, 236
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 2 cut(s) 199, 236
MwoI GCNNNNNNNGC 4 cut(s) 50, 260, 269, 640
NdeI CATATG 1 cut(s) 416
NdeII GATC 4 cut(s) 443, 520, 583, 606
NlaIII CATG 2 cut(s) 520, 600
NsiI ATGCAT 1 cut(s) 364
PceI AGGCCT 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 389
PctI GAATGC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 135, 225
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 461, 484
PpsI GAGTC 2 cut(s) 461, 484
Psp6I CCWGG 2 cut(s) 197, 234
PspGI CCWGG 2 cut(s) 197, 234
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 7 cut(s) 48, 258, 266, 281, 290, 377, 485
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 4 cut(s) 443, 520, 583, 606
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 2 cut(s) 461, 484
ScrFI CCNGG 2 cut(s) 199, 236
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 58, 98, 145, 312, 324, 465, 573, 650
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 515
Sse9I AATT 3 cut(s) 287, 422, 616
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 2 cut(s) 38, 272
SspMI CTAG 2 cut(s) 311, 649
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 197, 234
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 138
TasI AATT 3 cut(s) 287, 422, 616
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 2 cut(s) 135, 225
Tru1I TTAA 7 cut(s) 48, 258, 266, 281, 290, 377, 485
Tru9I TTAA 7 cut(s) 48, 258, 266, 281, 290, 377, 485
TscAI CASTG 1 cut(s) 28
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 1 cut(s) 28
XspI CTAG 2 cut(s) 311, 649
ZrmI AGTACT 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.