Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008305

Physical Location & Seq

Genomic Coordinates Reverse (-)

37027445 .. 37029797

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1289400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGTGCTTTTGTTTCTGGGGAAAGTGATTATGTCTCAAACAGTTGGAGACTCAGGAATGAGAAGGGATGCTTGGAACTTCTGCAATGAAGTTGGAGCAGAAGCACCTGATATGGGCAGCCCCAGAGCTGCTGATTGCTTTAATCTCACAAGTACTTCCTTAAAACACAGAGTGAGCGAAAAAGATAACTTGCTTGGGGTGGGGACACCATTCCCAGGGATCAGCCAGAGAGCTTTGTGCAACGTAGACCTCTATGCAGTCGAGAAGGAGCTGTATCTGGGTTCTCTGTGTCAAGTCCCAGACTCTCCAAAACCATGGCAGTTCTGGATGATTATGCTAAAAAATGGAAACTTTGACACAATGGCTGGGCTGTGCCCTTCCAATGGGAAAAAGACACCGCCTTTTAGCGATCCCGGAAGGTTCCCTTGCTTTGGTAAGGGCTGTATGAATCAACCCACTGTGGTCCACCAGAAGACTCAGCTGTTGGATGGTAATACTACATTGAGAGGAGCTTTTAGTGGGACTTATGATCTGGGATCCAACCCTAGTAATCGGAGAAGAAACCCTCCAGAATCACCTAATTTTAAAGTAAGGCTGACTTTGGACATCAAAAAAGGAGGAGGACCCAAGAGCCAGTTTTACCTCATTGACGTTGGTGGCTGTTGGAAGAACAATGGCAAACCCTGTGACGGGGATGTGCTCACGGACGTGACCAGATACACGGGGATGGCAAACCCGGAAACTGCGGCTTGGTGCAGCCCCACAAATTTAGTCAATTGCCCGCCATACCATATCACTCCGGATAACAGAAAAATTTATAGAACCGACACCGCCAACTTCCCATATGGGGCTTATCACTTCTACTGTGCTCCGGGAAGTGCTCAATATTTAGAGAAACCTTTGCCTCCTCACCCCATCTGGGCCGAGTACAGCTATCCAACCAAACAAGGGCAGGGTTGGATTGGGGATGCTAGAACTTGGGAGCTTGATGTTGGAGGCCTATCCAGTAAACTCCACTACTACCAGGATCCCGGCACCACTTCTGCAAGAAGGATATGGGGATCAATTGATGTGGGTACAGAAATTTTTGTTAGTGACAAGGATGAAGTTGCAGAGTGGACTCTAAGGGTGTGTTTGTTTACCCTCACTAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

42.67

Weight (kDa)

7.88

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7705	PF24804	14 - 184	5.5e-69	Domain of unknown function (DUF7705)
DUF7705	PF24804	188 - 375	1.6e-93	Domain of unknown function (DUF7705)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47010 AT2G47010 AT2G47010
fragaria_vesca	FvH4_1g26330 FvH4_1g26330 FvH4_1g26330 FvH4_1g26330
malus_domestica	MD09G1289400.v1.1 MD17G1284100.v1.1
prunus_persica	Prupe.3G003300_v2.0.a1 Prupe.3G003300_v2.0.a1
pyrus_communis	pycom17g28000
rosa_chinensis	RchiOBHm_Chr3g0486001
rosa_laevigata	RLG00000023115
rosa_multiflora	Rmu_sc0006736.1_g000017 Rmu_sc0009687.1_g000020
rosa_roxburghii	Rroxscaffold_6G00396090
rosa_rugosa	Rorug03G0223200
rosa_samantha	Rh3AG272800 Rh3BG308000 Rh3CG306300 Rh3DG302700
rosa_wichuraiana	Rw3G024190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1034
AccI	GTMKAC	1 cut(s)	246
AccIII	TCCGGA	1 cut(s)	799
AciI	CCGC	4 cut(s)	398, 746, 782, 831
AclWI	GGATC	7 cut(s)	227, 404, 531, 544, 1022, 1035, 1069
AcsI	RAATTY	3 cut(s)	766, 813, 1083
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	3 cut(s)	154, 929, 1078
AfiI	CCNNNNNNNGG	9 cut(s)	113, 215, 383, 431, 689, 690, 847, 919, 948
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	214, 1023
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	7 cut(s)	128, 233, 271, 481, 512, 933, 985
AluI	AGCT	7 cut(s)	128, 233, 271, 481, 512, 933, 985
Alw21I	GWGCWC	3 cut(s)	702, 871, 883
Alw26I	GTCTC	2 cut(s)	39, 42
AlwI	GGATC	7 cut(s)	227, 404, 531, 544, 1022, 1035, 1069
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	2 cut(s)	921, 997
ApeKI	GCWGC	3 cut(s)	117, 128, 756
ApoI	RAATTY	3 cut(s)	766, 813, 1083
AspS9I	GGNCC	3 cut(s)	463, 623, 921
AsuC2I	CCSGG	4 cut(s)	414, 737, 873, 1032
AsuHPI	GGTGA	2 cut(s)	567, 902
AvaII	GGWCC	2 cut(s)	463, 623
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	2 cut(s)	536, 1027
BanI	GGYRCC	1 cut(s)	1034
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	3 cut(s)	702, 871, 883
BbvI	GCAGC	3 cut(s)	115, 129, 768
BccI	CCATC	3 cut(s)	482, 721, 923
BciT130I	CCWGG	2 cut(s)	216, 1025
BcnI	CCSGG	4 cut(s)	414, 737, 873, 1032
BcoDI	GTCTC	2 cut(s)	39, 42
BfaI	CTAG	3 cut(s)	546, 972, 1156
BisI	GCNGC	4 cut(s)	118, 129, 747, 757
BlsI	GCNGC	4 cut(s)	119, 130, 748, 758
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	6 cut(s)	216, 414, 737, 873, 1025, 1032
Bme18I	GGWCC	2 cut(s)	463, 623
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	3 cut(s)	463, 623, 921
BmiI	GGNNCC	5 cut(s)	422, 538, 625, 1029, 1036
BmrFI	CCNGG	6 cut(s)	216, 414, 737, 873, 1025, 1032
BmsI	GCATC	2 cut(s)	58, 958
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	552
BpuMI	CCSGG	4 cut(s)	414, 737, 873, 1032
BsaJI	CCNNGG	3 cut(s)	214, 215, 314
BsaWI	WCCGGW	1 cut(s)	799
Bsc4I	CCNNNNNNNGG	9 cut(s)	113, 215, 383, 431, 689, 690, 847, 919, 948
Bse1I	ACTGG	2 cut(s)	634, 1005
Bse3DI	GCAATG	1 cut(s)	91
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	2 cut(s)	216, 1025
BseDI	CCNNGG	3 cut(s)	214, 215, 314
BseGI	GGATG	7 cut(s)	73, 333, 493, 700, 732, 973, 1108
BseLI	CCNNNNNNNGG	9 cut(s)	113, 215, 383, 431, 689, 690, 847, 919, 948
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	66, 491
BseNI	ACTGG	2 cut(s)	634, 1005
BseRI	GAGGAG	3 cut(s)	522, 633, 897
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	115, 129, 768
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	775
BshFI	GGCC	2 cut(s)	923, 999
BshNI	GGYRCC	1 cut(s)	1034
BsiHKAI	GWGCWC	3 cut(s)	702, 871, 883
BsiSI	CCGG	5 cut(s)	414, 737, 800, 872, 1032
BslFI	GGGAC	3 cut(s)	217, 281, 535
BslI	CCNNNNNNNGG	9 cut(s)	113, 215, 383, 431, 689, 690, 847, 919, 948
BsmAI	GTCTC	2 cut(s)	39, 42
BsmFI	GGGAC	3 cut(s)	217, 281, 535
BsnI	GGCC	2 cut(s)	923, 999
Bsp1286I	GDGCHC	4 cut(s)	377, 702, 871, 883
Bsp13I	TCCGGA	1 cut(s)	799
Bsp143I	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	4 cut(s)	398, 746, 782, 831
BspANI	GGCC	2 cut(s)	923, 999
BspCNI	CTCAG	2 cut(s)	65, 490
BspEI	TCCGGA	1 cut(s)	799
BspLI	GGNNCC	5 cut(s)	422, 538, 625, 1029, 1036
BspPI	GGATC	7 cut(s)	227, 404, 531, 544, 1022, 1035, 1069
BspT107I	GGYRCC	1 cut(s)	1034
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	634, 1005
BssECI	CCNNGG	3 cut(s)	214, 215, 314
BssMI	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	216, 1025
Bst4CI	ACNGT	3 cut(s)	43, 460, 866
BstC8I	GCNNGC	1 cut(s)	782
BstDEI	CTNAG	3 cut(s)	52, 477, 1124
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	7 cut(s)	73, 333, 493, 700, 732, 973, 1108
BstKTI	GATC	6 cut(s)	222, 412, 532, 539, 1030, 1064
BstMAI	GTCTC	2 cut(s)	39, 42
BstMBI	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
BstNI	CCWGG	2 cut(s)	216, 1025
BstSCI	CCNGG	6 cut(s)	214, 412, 735, 871, 1023, 1030
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	115, 129, 768
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	536, 1027
BstXI	CCANNNNNNTGG	1 cut(s)	315
BstYI	RGATCY	2 cut(s)	536, 1027
BsuRI	GGCC	2 cut(s)	923, 999
BtgI	CCRYGG	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	7 cut(s)	73, 333, 493, 700, 732, 973, 1108
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	782
Cfr13I	GGNCC	3 cut(s)	463, 623, 921
Csp6I	GTAC	3 cut(s)	153, 928, 1077
CspCI	CAANNNNNGTGG	2 cut(s)	1053, 1088
CviAII	CATG	1 cut(s)	315
CviQI	GTAC	3 cut(s)	153, 928, 1077
DdeI	CTNAG	3 cut(s)	52, 477, 1124
DpnI	GATC	6 cut(s)	221, 411, 531, 538, 1029, 1063
DpnII	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
DraI	TTTAAA	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	314
Eco147I	AGGCCT	1 cut(s)	999
Eco47I	GGWCC	2 cut(s)	463, 623
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	214, 1023
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	318
FalI	AAGNNNNNCTT	6 cut(s)	55, 87, 409, 441, 583, 615
FaqI	GGGAC	3 cut(s)	217, 281, 535
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	789
FauNDI	CATATG	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	118, 129, 747, 757
FokI	GGATG	7 cut(s)	80, 340, 500, 707, 739, 980, 1115
Fsp4HI	GCNGC	4 cut(s)	118, 129, 747, 757
FspBI	CTAG	3 cut(s)	546, 972, 1156
GluI	GCNGC	4 cut(s)	118, 129, 747, 757
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	923, 999
HapII	CCGG	5 cut(s)	414, 737, 800, 872, 1032
Hin1II	CATG	1 cut(s)	318
HinfI	GANTC	6 cut(s)	50, 302, 448, 475, 572, 1120
HpaII	CCGG	5 cut(s)	414, 737, 800, 872, 1032
HphI	GGTGA	2 cut(s)	567, 902
Hpy166II	GTNNAC	5 cut(s)	247, 466, 1010, 1119, 1140
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	5 cut(s)	54, 262, 325, 569, 800
Hpy8I	GTNNAC	5 cut(s)	247, 466, 1010, 1119, 1140
HpyAV	CCTTC	5 cut(s)	57, 259, 387, 411, 1044
HpyCH4III	ACNGT	3 cut(s)	43, 460, 866
HpyCH4IV	ACGT	3 cut(s)	243, 651, 708
HpyCH4V	TGCA	6 cut(s)	84, 240, 257, 756, 1046, 1112
HpyF3I	CTNAG	3 cut(s)	52, 477, 1124
HpySE526I	ACGT	3 cut(s)	243, 651, 708
Hsp92II	CATG	1 cut(s)	318
Kpn2I	TCCGGA	1 cut(s)	799
Kzo9I	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
LmnI	GCTCC	5 cut(s)	95, 268, 509, 874, 982
Lsp1109I	GCAGC	3 cut(s)	115, 129, 768
LweI	GCATC	2 cut(s)	58, 958
MaeI	CTAG	3 cut(s)	546, 972, 1156
MaeII	ACGT	3 cut(s)	243, 651, 708
MaeIII	GTNAC	3 cut(s)	686, 709, 1094
MalI	GATC	6 cut(s)	221, 411, 531, 538, 1029, 1063
MboI	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
MboII	GAAGA	3 cut(s)	484, 570, 679
MfeI	CAATTG	2 cut(s)	775, 1065
MflI	RGATCY	2 cut(s)	536, 1027
MhlI	GDGCHC	4 cut(s)	377, 702, 871, 883
MluCI	AATT	6 cut(s)	580, 766, 775, 813, 1065, 1083
MlyI	GAGTC	4 cut(s)	44, 296, 469, 1114
MmeI	TCCRAC	8 cut(s)	25, 73, 465, 564, 644, 938, 962, 973
MroI	TCCGGA	1 cut(s)	799
MseI	TTAA	3 cut(s)	141, 161, 585
MslI	CAYNNNNRTG	2 cut(s)	707, 725
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	5 cut(s)	414, 737, 800, 872, 1032
MspR9I	CCNGG	6 cut(s)	216, 414, 737, 873, 1025, 1032
MunI	CAATTG	2 cut(s)	775, 1065
MvaI	CCWGG	2 cut(s)	216, 1025
NciI	CCSGG	4 cut(s)	414, 737, 873, 1032
NcoI	CCATGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	5 cut(s)	422, 538, 625, 1029, 1036
NmeAIII	GCCGAG	1 cut(s)	949
NmuCI	GTSAC	3 cut(s)	686, 709, 1094
OliI	CACNNNNGTG	1 cut(s)	707
PasI	CCCWGGG	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	999
PfeI	GAWTC	2 cut(s)	448, 572
PfoI	TCCNGGA	2 cut(s)	412, 871
PkrI	GCNGC	4 cut(s)	119, 130, 748, 758
PleI	GAGTC	4 cut(s)	44, 296, 469, 1114
PpsI	GAGTC	4 cut(s)	44, 296, 469, 1114
PpuMI	RGGWCCY	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	2 cut(s)	214, 1023
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	214, 1023
PspN4I	GGNNCC	5 cut(s)	422, 538, 625, 1029, 1036
PspPI	GGNCC	3 cut(s)	463, 623, 921
PspPPI	RGGWCCY	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	536, 1027
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	3 cut(s)	154, 929, 1078
RsaNI	GTAC	3 cut(s)	153, 928, 1077
RseI	CAYNNNNRTG	2 cut(s)	707, 725
SaqAI	TTAA	3 cut(s)	141, 161, 585
SatI	GCNGC	4 cut(s)	118, 129, 747, 757
Sau3AI	GATC	6 cut(s)	219, 409, 529, 536, 1027, 1061
Sau96I	GGNCC	3 cut(s)	463, 623, 921
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	4 cut(s)	44, 296, 469, 1114
ScrFI	CCNGG	6 cut(s)	216, 414, 737, 873, 1025, 1032
SduI	GDGCHC	4 cut(s)	377, 702, 871, 883
SfaNI	GCATC	2 cut(s)	58, 958
SinI	GGWCC	2 cut(s)	463, 623
SmiMI	CAYNNNNRTG	2 cut(s)	707, 725
Sse9I	AATT	6 cut(s)	580, 766, 775, 813, 1065, 1083
SseBI	AGGCCT	1 cut(s)	999
SsiI	CCGC	4 cut(s)	398, 746, 782, 831
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	3 cut(s)	546, 972, 1156
StuI	AGGCCT	1 cut(s)	999
StyD4I	CCNGG	6 cut(s)	214, 412, 735, 871, 1023, 1030
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	3 cut(s)	43, 460, 866
TaiI	ACGT	3 cut(s)	246, 654, 711
TaqI	TCGA	1 cut(s)	261
TasI	AATT	6 cut(s)	580, 766, 775, 813, 1065, 1083
TatI	WGTACW	2 cut(s)	152, 927
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	2 cut(s)	448, 572
Tru1I	TTAA	3 cut(s)	141, 161, 585
Tru9I	TTAA	3 cut(s)	141, 161, 585
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	3 cut(s)	686, 709, 1094
TseI	GCWGC	3 cut(s)	117, 128, 756
Tsp45I	GTSAC	3 cut(s)	686, 709, 1094
TspDTI	ATGAA	3 cut(s)	102, 461, 1119
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	463, 623
XapI	RAATTY	3 cut(s)	766, 813, 1083
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	3 cut(s)	546, 972, 1156
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.