Rh3CG306300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008305
Physical Location & Seq
Forward (+)
31955109 .. 31962198
7090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG306300.1

Sequence Viewer

Length: 1359 bp
ATGAATAAGAAGCAGGGTGTGTCATTGTTATTGTTGTGGGCACATTTGCTTCTGCTCAGTGCAGTTGATGGAGCAAAGTCAAGCAATGGCTACATCTCTGCAGTGGGAGACCCAGGAATGAAGAGAGATGGGCTGAGAGTGGCCTTGGAAGCTTGGAACTTCTGCAATGAAGTTGGCGAAGAAGCACCTGGAATGGGTAGCCCAAGAGCAGCAGATTGCTTTGATATCATAGATGGTACTCTCCAGCATAAGGTGAATGCTAGTGATAACAAACTCGGAGTGGGTATGCATTTCCCCGGTTTGAGCATCCATGATCAGAACAGTGTAGACATCTATGCAGCGAGGAAGGAGGAGCGTCTGGGGTGTTTGTGCCAAGTTTCGGATACTCCGAGACCGTGGCAATTTTGGATGATTATGTTAAAGAATGGAAACTTTGACACACAGGCTGGTTTGTGTCCTTCGGATGGGAAAAGGGTTGGCCCTTTTTCGCAACCGGGAAGGTTTCCTTGCTTTGGAACTGGGTGTATGAACCAGCCCACTGTGAATCACCAAGAGACTCAGCTTTTGGGTGATGGCACAATGATAGGAGGCTTCAAGGGGACCTATGATTTGGGGTCTGATATTGAGGCTGGACTTGATGGTATTTCTTTCTATGAGGTGGTTTGGCAGAAGAAACAGGGGGAAGGGAGTTGGATGTTCCATCACAAGCTCAAGACCTCGAAGAAGTACCCATGGCTGATGCTCTACCTCAGAGCTGATGCAACAAAAGGATTTTCTGGGGGTTATCACTATGATACAAGGGGAATGCTCAAAACTCTTCCAGAGGGTCCAAATTTTAAGGTGAGGCTGACTTTGGATATCAAACAAGGAGGAGGACCCAAGAGCCAGTTTTACCTAATTGACATTGGTAGCTGTTGGAAGAACAATGGCCAGCCTTGCACCGGAGATGTCACCACCGATGTAACCAGATACACCGAGATGATCATTAACCCTGATACCCCTGCTTGGTGCAGCCCTAAAGCTCAGGGAAATTGCCCGCCATACCACATTACTCCAGATGACAGAAAAATCTACAAAAATGACACAGCTAATTTCCCATACGGTGCATATCACTACTACTGTGCTCCAGGGAATGCGAAATTTGTAGGTAAAGATGTGGGGCCGTGCGATCGCTACAGTAACCCTCAGGCGCAAGAGATACTCCAGTTGCTTCCTCACCCAATATGGGGCGAGTATGGCTATCCAACTAAAAAAGGACAAGGTTGGATTGGTGACGCTAGAACTTGGGAGCTTGATGTTGGTGGACTATCAAGTAGACTCTACTACTATCAGGTAAGCTACATACCGTTAACTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

452

Amino Acids

50.12

Weight (kDa)

7.12

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 32 - 444 8.5e-225 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 327, 1315
AciI CCGC 1 cut(s) 1037
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 2 cut(s) 832, 1139
AfaI GTAC 2 cut(s) 238, 728
AfiI CCNNNNNNNGG 9 cut(s) 194, 250, 379, 464, 512, 941, 1005, 1225, 1226
AgsI TTSAA 1 cut(s) 595
AjnI CCWGG 3 cut(s) 112, 187, 1126
AluBI AGCT 9 cut(s) 152, 562, 709, 755, 912, 1022, 1088, 1291, 1338
AluI AGCT 9 cut(s) 152, 562, 709, 755, 912, 1022, 1088, 1291, 1338
Alw21I GWGCWC 1 cut(s) 1126
Alw26I GTCTC 3 cut(s) 102, 385, 548
AoxI GGCC 4 cut(s) 141, 478, 928, 1160
ApeKI GCWGC 3 cut(s) 209, 338, 1011
ApoI RAATTY 2 cut(s) 832, 1139
ArsI GACNNNNNNTTYG 4 cut(s) 547, 579, 592, 624
AsiSI GCGATCGC 1 cut(s) 1171
AspLEI GCGC 1 cut(s) 1192
AspS9I GGNCC 5 cut(s) 479, 600, 827, 875, 1160
AsuC2I CCSGG 2 cut(s) 297, 495
AsuHPI GGTGA 7 cut(s) 265, 539, 581, 853, 943, 1208, 1283
AvaII GGWCC 3 cut(s) 600, 827, 875
AxyI CCTNAGG 1 cut(s) 1185
BaeGI GKGCMC 1 cut(s) 43
BaeI ACNNNNGTAYC 2 cut(s) 1190, 1223
BalI TGGCCA 1 cut(s) 930
Bbv12I GWGCWC 1 cut(s) 1126
BbvI GCAGC 3 cut(s) 221, 350, 1023
BccI CCATC 7 cut(s) 62, 122, 227, 458, 566, 632, 708
BceAI ACGGC 1 cut(s) 1147
BciT130I CCWGG 3 cut(s) 114, 189, 1128
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 2 cut(s) 313, 981
BcnI CCSGG 2 cut(s) 297, 495
BcoDI GTCTC 3 cut(s) 102, 385, 548
BfaI CTAG 2 cut(s) 261, 1278
BfmI CTRYAG 2 cut(s) 99, 1174
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 3 cut(s) 210, 339, 1012
BlsI GCNGC 3 cut(s) 211, 340, 1013
Bme1390I CCNGG 5 cut(s) 114, 189, 297, 495, 1128
Bme18I GGWCC 3 cut(s) 600, 827, 875
BmgT120I GGNCC 5 cut(s) 479, 600, 827, 875, 1160
BmiI GGNNCC 4 cut(s) 601, 828, 877, 1161
BmrFI CCNGG 5 cut(s) 114, 189, 297, 495, 1128
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 3 cut(s) 315, 729, 748
BmuI ACTGGG 1 cut(s) 528
BpmI CTGGAG 4 cut(s) 227, 1038, 1110, 1187
Bpu10I CCTNAGC 1 cut(s) 1023
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 2 cut(s) 297, 495
BsaI GGTCTC 2 cut(s) 102, 385
BsaJI CCNNGG 6 cut(s) 112, 144, 295, 395, 731, 1127
BsaWI WCCGGW 1 cut(s) 941
Bsc4I CCNNNNNNNGG 9 cut(s) 194, 250, 379, 464, 512, 941, 1005, 1225, 1226
Bse1I ACTGG 3 cut(s) 523, 886, 1204
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 2 cut(s) 91, 172
BseBI CCWGG 3 cut(s) 114, 189, 1128
BseDI CCNNGG 6 cut(s) 112, 144, 295, 395, 731, 1127
BseGI GGATG 4 cut(s) 306, 414, 469, 699
BseLI CCNNNNNNNGG 9 cut(s) 194, 250, 379, 464, 512, 941, 1005, 1225, 1226
BseMI GCAATG 2 cut(s) 91, 172
BseMII CTCAG 6 cut(s) 70, 125, 572, 763, 1037, 1199
BseNI ACTGG 3 cut(s) 523, 886, 1204
BseRI GAGGAG 2 cut(s) 365, 885
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 3 cut(s) 221, 350, 1023
BsgI GTGCAG 2 cut(s) 81, 1030
Bsh1285I CGRYCG 1 cut(s) 1171
BshFI GGCC 4 cut(s) 143, 480, 930, 1162
BsiEI CGRYCG 1 cut(s) 1171
BsiHKAI GWGCWC 1 cut(s) 1126
BsiSI CCGG 3 cut(s) 297, 494, 942
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 9 cut(s) 194, 250, 379, 464, 512, 941, 1005, 1225, 1226
BsmAI GTCTC 3 cut(s) 102, 385, 548
BsmFI GGGAC 1 cut(s) 613
BsmI GAATGC 3 cut(s) 262, 810, 1138
BsnI GGCC 4 cut(s) 143, 480, 930, 1162
Bso31I GGTCTC 2 cut(s) 102, 385
Bsp1286I GDGCHC 2 cut(s) 43, 1126
Bsp143I GATC 3 cut(s) 313, 981, 1168
Bsp19I CCATGG 1 cut(s) 731
BspACI CCGC 1 cut(s) 1037
BspANI GGCC 4 cut(s) 143, 480, 930, 1162
BspCNI CTCAG 6 cut(s) 69, 126, 571, 762, 1036, 1198
BspLI GGNNCC 4 cut(s) 601, 828, 877, 1161
BspMAI CTGCAG 1 cut(s) 103
BspTNI GGTCTC 2 cut(s) 102, 385
BsrDI GCAATG 2 cut(s) 91, 172
BsrI ACTGG 3 cut(s) 523, 886, 1204
BssECI CCNNGG 6 cut(s) 112, 144, 295, 395, 731, 1127
BssMI GATC 3 cut(s) 313, 981, 1168
BssT1I CCWWGG 2 cut(s) 144, 731
Bst2UI CCWGG 3 cut(s) 114, 189, 1128
Bst4CI ACNGT 7 cut(s) 323, 396, 541, 1103, 1121, 1178, 1347
Bst6I CTCTTC 2 cut(s) 116, 822
BstC8I GCNNGC 2 cut(s) 932, 1037
BstDEI CTNAG 6 cut(s) 56, 134, 558, 749, 1023, 1185
BstDSI CCRYGG 2 cut(s) 395, 731
BstF5I GGATG 4 cut(s) 306, 414, 469, 699
BstHHI GCGC 1 cut(s) 1192
BstKTI GATC 3 cut(s) 316, 984, 1171
BstMAI GTCTC 3 cut(s) 102, 385, 548
BstMBI GATC 3 cut(s) 313, 981, 1168
BstMCI CGRYCG 1 cut(s) 1171
BstMWI GCNNNNNNNGC 3 cut(s) 149, 936, 1236
BstNI CCWGG 3 cut(s) 114, 189, 1128
BstSCI CCNGG 5 cut(s) 112, 187, 295, 493, 1126
BstSFI CTRYAG 2 cut(s) 99, 1174
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 221, 350, 1023
Bsu36I CCTNAGG 1 cut(s) 1185
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 4 cut(s) 143, 480, 930, 1162
BtgI CCRYGG 2 cut(s) 395, 731
BtsCI GGATG 4 cut(s) 306, 414, 469, 699
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 4 cut(s) 64, 108, 328, 537
Cac8I GCNNGC 2 cut(s) 932, 1037
CfoI GCGC 1 cut(s) 1192
Cfr13I GGNCC 5 cut(s) 479, 600, 827, 875, 1160
CseI GACGC 2 cut(s) 344, 1283
Csp6I GTAC 2 cut(s) 237, 727
CviAII CATG 2 cut(s) 311, 732
CviQI GTAC 2 cut(s) 237, 727
DdeI CTNAG 6 cut(s) 56, 134, 558, 749, 1023, 1185
DpnI GATC 3 cut(s) 315, 983, 1170
DpnII GATC 3 cut(s) 313, 981, 1168
EaeI YGGCCR 1 cut(s) 928
Eam1104I CTCTTC 2 cut(s) 116, 822
EarI CTCTTC 2 cut(s) 116, 822
Eco130I CCWWGG 2 cut(s) 144, 731
Eco31I GGTCTC 2 cut(s) 102, 385
Eco32I GATATC 2 cut(s) 226, 859
Eco47I GGWCC 3 cut(s) 600, 827, 875
Eco81I CCTNAGG 1 cut(s) 1185
EcoO109I RGGNCCY 2 cut(s) 600, 875
EcoRII CCWGG 3 cut(s) 112, 187, 1126
EcoRV GATATC 2 cut(s) 226, 859
EcoT14I CCWWGG 2 cut(s) 144, 731
EcoT22I ATGCAT 1 cut(s) 291
ErhI CCWWGG 2 cut(s) 144, 731
FaeI CATG 2 cut(s) 314, 735
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 1 cut(s) 613
FatI CATG 2 cut(s) 310, 731
FauI CCCGC 1 cut(s) 1044
FbaI TGATCA 2 cut(s) 313, 981
FblI GTMKAC 2 cut(s) 327, 1315
Fnu4HI GCNGC 3 cut(s) 210, 339, 1012
FokI GGATG 4 cut(s) 293, 421, 476, 706
Fsp4HI GCNGC 3 cut(s) 210, 339, 1012
FspBI CTAG 2 cut(s) 261, 1278
GlaI GCGC 1 cut(s) 1191
GluI GCNGC 3 cut(s) 210, 339, 1012
GsuI CTGGAG 4 cut(s) 227, 1038, 1110, 1187
HaeIII GGCC 4 cut(s) 143, 480, 930, 1162
HapII CCGG 3 cut(s) 297, 494, 942
HgaI GACGC 2 cut(s) 344, 1283
HhaI GCGC 1 cut(s) 1192
Hin1II CATG 2 cut(s) 314, 735
Hin6I GCGC 1 cut(s) 1190
HinP1I GCGC 1 cut(s) 1190
HincII GTYRAC 1 cut(s) 1350
HindII GTYRAC 1 cut(s) 1350
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 544, 556, 1317
HpaI GTTAAC 1 cut(s) 1350
HpaII CCGG 3 cut(s) 297, 494, 942
HphI GGTGA 7 cut(s) 265, 539, 581, 853, 943, 1208, 1283
Hpy166II GTNNAC 4 cut(s) 328, 1304, 1316, 1350
Hpy188I TCNGA 7 cut(s) 278, 318, 382, 390, 463, 619, 752
Hpy188III TCNNGA 3 cut(s) 712, 821, 1055
Hpy8I GTNNAC 4 cut(s) 328, 1304, 1316, 1350
HpyAV CCTTC 4 cut(s) 340, 468, 492, 677
HpyCH4III ACNGT 7 cut(s) 323, 396, 541, 1103, 1121, 1178, 1347
HpyCH4V TGCA 9 cut(s) 62, 101, 165, 289, 338, 761, 939, 1011, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 936, 1236
HpyF3I CTNAG 6 cut(s) 56, 134, 558, 749, 1023, 1185
Hsp92II CATG 2 cut(s) 314, 735
HspAI GCGC 1 cut(s) 1190
Ksp22I TGATCA 2 cut(s) 313, 981
KspAI GTTAAC 1 cut(s) 1350
Kzo9I GATC 3 cut(s) 313, 981, 1168
LmnI GCTCC 4 cut(s) 71, 352, 1129, 1288
Lsp1109I GCAGC 3 cut(s) 221, 350, 1023
LweI GCATC 3 cut(s) 315, 729, 748
MaeI CTAG 2 cut(s) 261, 1278
MaeIII GTNAC 4 cut(s) 949, 961, 1178, 1271
MalI GATC 3 cut(s) 315, 983, 1170
MboI GATC 3 cut(s) 313, 981, 1168
MboII GAAGA 6 cut(s) 133, 191, 682, 733, 809, 931
MhlI GDGCHC 2 cut(s) 43, 1126
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 6 cut(s) 401, 832, 897, 1030, 1090, 1139
MluNI TGGCCA 1 cut(s) 930
MlyI GAGTC 2 cut(s) 550, 1311
MmeI TCCRAC 4 cut(s) 671, 896, 1244, 1268
Mox20I TGGCCA 1 cut(s) 930
Mph1103I ATGCAT 1 cut(s) 291
MscI TGGCCA 1 cut(s) 930
MseI TTAA 4 cut(s) 419, 837, 987, 1349
MslI CAYNNNNRTG 1 cut(s) 977
Msp20I TGGCCA 1 cut(s) 930
MspI CCGG 3 cut(s) 297, 494, 942
MspR9I CCNGG 5 cut(s) 114, 189, 297, 495, 1128
Mva1269I GAATGC 3 cut(s) 262, 810, 1138
MvaI CCWGG 3 cut(s) 114, 189, 1128
MwoI GCNNNNNNNGC 3 cut(s) 149, 936, 1236
NciI CCSGG 2 cut(s) 297, 495
NcoI CCATGG 1 cut(s) 731
NdeII GATC 3 cut(s) 313, 981, 1168
NlaIII CATG 2 cut(s) 314, 735
NlaIV GGNNCC 4 cut(s) 601, 828, 877, 1161
NmuCI GTSAC 2 cut(s) 949, 1271
NsiI ATGCAT 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PctI GAATGC 3 cut(s) 262, 810, 1138
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 3 cut(s) 211, 340, 1013
Ple19I CGATCG 1 cut(s) 1171
PleI GAGTC 2 cut(s) 550, 1311
PpsI GAGTC 2 cut(s) 550, 1311
PpuMI RGGWCCY 2 cut(s) 600, 875
Psp5II RGGWCCY 2 cut(s) 600, 875
Psp6I CCWGG 3 cut(s) 112, 187, 1126
PspGI CCWGG 3 cut(s) 112, 187, 1126
PspN4I GGNNCC 4 cut(s) 601, 828, 877, 1161
PspPI GGNCC 5 cut(s) 479, 600, 827, 875, 1160
PspPPI RGGWCCY 2 cut(s) 600, 875
PstI CTGCAG 1 cut(s) 103
PvuI CGATCG 1 cut(s) 1171
RgaI GCGATCGC 1 cut(s) 1171
RsaI GTAC 2 cut(s) 238, 728
RsaNI GTAC 2 cut(s) 237, 727
RseI CAYNNNNRTG 1 cut(s) 977
SaqAI TTAA 4 cut(s) 419, 837, 987, 1349
SatI GCNGC 3 cut(s) 210, 339, 1012
Sau3AI GATC 3 cut(s) 313, 981, 1168
Sau96I GGNCC 5 cut(s) 479, 600, 827, 875, 1160
SchI GAGTC 2 cut(s) 550, 1311
ScrFI CCNGG 5 cut(s) 114, 189, 297, 495, 1128
SduI GDGCHC 2 cut(s) 43, 1126
SfaAI GCGATCGC 1 cut(s) 1171
SfaNI GCATC 3 cut(s) 315, 729, 748
SfcI CTRYAG 2 cut(s) 99, 1174
SgfI GCGATCGC 1 cut(s) 1171
SinI GGWCC 3 cut(s) 600, 827, 875
SmiMI CAYNNNNRTG 1 cut(s) 977
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
Sse9I AATT 6 cut(s) 401, 832, 897, 1030, 1090, 1139
SsiI CCGC 1 cut(s) 1037
SspMI CTAG 2 cut(s) 261, 1278
StyD4I CCNGG 5 cut(s) 112, 187, 295, 493, 1126
StyI CCWWGG 2 cut(s) 144, 731
TaaI ACNGT 7 cut(s) 323, 396, 541, 1103, 1121, 1178, 1347
TaqI TCGA 1 cut(s) 719
TasI AATT 6 cut(s) 401, 832, 897, 1030, 1090, 1139
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 4 cut(s) 419, 837, 987, 1349
Tru9I TTAA 4 cut(s) 419, 837, 987, 1349
TscAI CASTG 4 cut(s) 64, 108, 328, 544
TseFI GTSAC 2 cut(s) 949, 1271
TseI GCWGC 3 cut(s) 209, 338, 1011
Tsp45I GTSAC 2 cut(s) 949, 1271
TspDTI ATGAA 4 cut(s) 17, 134, 183, 542
TspRI CASTG 4 cut(s) 64, 108, 328, 544
VpaK11BI GGWCC 3 cut(s) 600, 827, 875
XapI RAATTY 2 cut(s) 832, 1139
XmiI GTMKAC 2 cut(s) 327, 1315
XspI CTAG 2 cut(s) 261, 1278
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.