Rh3AG272800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008305
Physical Location & Seq
Forward (+)
31165889 .. 31170245
4357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG272800.1

Sequence Viewer

Length: 1311 bp
ATGTTTGCTGGCTTTTTTTGCACTATTATTACATTCTGTGATGATGATTCTTGGTTTTGTTGTAATGGAGCAGATGGTTCTCTACAGCATAAGGTGAATGCTAGTGATAACAAACTCGGAGTGGGTATGCATTTCCCCGGGTTGAGCATCCATGATCAGAACAGTGTAGACATCTATGCAGCGAGGAAGGAGGAGCGTCTGGGGTGTTTGTGCCAAGTTTCGGATACTCCGAGACCGTGGCAATTTTGGATGATTATGTTAAAGAATGGAAACTTTGACACACAGGCTGGTTTGTGTCCTTCGGATGGGAAAAGGGTTGGTCCTTTTTCGCAACCGGGAAGGTTTCCTTGCTTTGGAACTGGGTGTATGAACCAGCCCACTGTGAATCACCAAGAGACTCAGCTTTTGGGTGATGGCAAAATGATTGGAGGCTTCAAGGGGACCTATGATTTGGGGTCTGAGATTGACGCTGGACTTGATGGTGTTTCTTTCTATGAGGTGGTTTGGCAGAAGAAACAGGGGGAAGGGAGTTGGATGTTCCATCACAAGCTCAAGACCTCGAAGAAGTACCCATGGCTGATGCTCTACCTTAGAGCTGATGCAACAAAAGGATTTTCTGGGGGTTATCACTATGATACAAGGGGAATGCTCAAAACTCTTCCAGAGGGTCCAAATTTTAAGGTGAGGCTGACTTTGGATATCAAACAAGGAGGAGGACCCAAGAGCCAGTTTTACCTAATTGACATTGGTAGCTGTTGGAAGAACAATGGCCAGCCTTGCACCGGAGATGTCACCACCGATGTAACCAGATACACCGAGATGATCATTAACCCTGATACCCCTGCTTGGTGCAGCCCTAAAGCTCAGGGAAATTGCCCGCCATACCACATTACTCCAGATGACAGAAAAATCTACAAAAATGACACAGCTAATTTCCCATACGGTGCATATCACTACTACTGTGCTCCAGGGAATGCGAAATTTGTAGATAAAGATGTGGGGCCGTGCGATCGCTACAGTAACCCTCAGGCGCAAGAGATACTCCAGTTGCTTCCTCACCCGATATGGGGCGAGTATGGCTACCCAACTAAAAAAGGACAAGGTTGGATTGGTGACCCTAGAACTTGGGAGCTTGATGTTGGTGGACTATCAAGTAGACTCTACTACTATCAGGATCCAGGCACGTCTCCTGCTAGAAGGATATGGACATCACTCGATGTCGGTACAGAAATTTTTGTTAGTGACAAAGATGAAGTGGCAGAGTGGACTCTAAGCGACTTCGACGTCATTTTTACACCTCCTCAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

48.91

Weight (kDa)

5.94

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 22 - 430 9e-222 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1283
AatII GACGTC 1 cut(s) 1287
AccI GTMKAC 2 cut(s) 168, 1156
AciI CCGC 1 cut(s) 878
AclWI GGATC 2 cut(s) 1169, 1182
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 3 cut(s) 673, 980, 1230
AcyI GRCGYC 1 cut(s) 1284
AfaI GTAC 2 cut(s) 569, 1225
AfiI CCNNNNNNNGG 7 cut(s) 220, 305, 353, 782, 846, 1066, 1067
AgsI TTSAA 1 cut(s) 436
AjiI CACGTC 1 cut(s) 1185
AjnI CCWGG 2 cut(s) 967, 1177
AluBI AGCT 7 cut(s) 403, 550, 596, 753, 863, 929, 1132
AluI AGCT 7 cut(s) 403, 550, 596, 753, 863, 929, 1132
Alw21I GWGCWC 1 cut(s) 967
Alw26I GTCTC 3 cut(s) 226, 389, 1191
AlwI GGATC 2 cut(s) 1169, 1182
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 2 cut(s) 769, 1001
ApeKI GCWGC 2 cut(s) 179, 852
ApoI RAATTY 3 cut(s) 673, 980, 1230
ArsI GACNNNNNNTTYG 4 cut(s) 388, 420, 433, 465
AsiSI GCGATCGC 1 cut(s) 1012
AspLEI GCGC 1 cut(s) 1033
AspS9I GGNCC 5 cut(s) 320, 441, 668, 716, 1001
AsuC2I CCSGG 3 cut(s) 138, 139, 336
AsuHPI GGTGA 7 cut(s) 106, 380, 422, 694, 784, 1049, 1124
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 4 cut(s) 320, 441, 668, 716
AxyI CCTNAGG 1 cut(s) 1026
BaeI ACNNNNGTAYC 2 cut(s) 1031, 1064
BalI TGGCCA 1 cut(s) 771
BamHI GGATCC 1 cut(s) 1174
Bbv12I GWGCWC 1 cut(s) 967
BbvI GCAGC 2 cut(s) 191, 864
BccI CCATC 5 cut(s) 68, 299, 407, 473, 549
BceAI ACGGC 1 cut(s) 988
BciT130I CCWGG 2 cut(s) 969, 1179
BciVI GTATCC 1 cut(s) 217
BclI TGATCA 2 cut(s) 154, 822
BcnI CCSGG 3 cut(s) 138, 139, 336
BcoDI GTCTC 3 cut(s) 226, 389, 1191
BfaI CTAG 3 cut(s) 102, 1119, 1194
BfmI CTRYAG 2 cut(s) 83, 1015
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 2 cut(s) 180, 853
BlsI GCNGC 2 cut(s) 181, 854
Bme1390I CCNGG 5 cut(s) 138, 139, 336, 969, 1179
Bme18I GGWCC 4 cut(s) 320, 441, 668, 716
BmeT110I CYCGRG 1 cut(s) 137
BmgBI CACGTC 1 cut(s) 1185
BmgT120I GGNCC 5 cut(s) 320, 441, 668, 716, 1001
BmiI GGNNCC 5 cut(s) 442, 669, 718, 1002, 1176
BmrFI CCNGG 5 cut(s) 138, 139, 336, 969, 1179
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 3 cut(s) 156, 570, 589
BmuI ACTGGG 1 cut(s) 369
BpmI CTGGAG 3 cut(s) 879, 951, 1028
Bpu10I CCTNAGC 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 3 cut(s) 138, 139, 336
BsaHI GRCGYC 1 cut(s) 1284
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 5 cut(s) 136, 137, 236, 572, 968
BsaWI WCCGGW 1 cut(s) 782
Bsc4I CCNNNNNNNGG 7 cut(s) 220, 305, 353, 782, 846, 1066, 1067
Bse1I ACTGG 3 cut(s) 364, 727, 1045
Bse21I CCTNAGG 1 cut(s) 1026
BseBI CCWGG 2 cut(s) 969, 1179
BseDI CCNNGG 5 cut(s) 136, 137, 236, 572, 968
BseGI GGATG 4 cut(s) 147, 255, 310, 540
BseLI CCNNNNNNNGG 7 cut(s) 220, 305, 353, 782, 846, 1066, 1067
BseMII CTCAG 4 cut(s) 413, 450, 878, 1040
BseNI ACTGG 3 cut(s) 364, 727, 1045
BseRI GAGGAG 3 cut(s) 206, 726, 1290
BseXI GCAGC 2 cut(s) 191, 864
BsgI GTGCAG 1 cut(s) 871
Bsh1285I CGRYCG 1 cut(s) 1012
BshFI GGCC 2 cut(s) 771, 1003
BsiEI CGRYCG 1 cut(s) 1012
BsiHKAI GWGCWC 1 cut(s) 967
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 3 cut(s) 138, 335, 783
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 7 cut(s) 220, 305, 353, 782, 846, 1066, 1067
BsmAI GTCTC 3 cut(s) 226, 389, 1191
BsmBI CGTCTC 1 cut(s) 1191
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 3 cut(s) 103, 651, 979
BsnI GGCC 2 cut(s) 771, 1003
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 967
Bsp143I GATC 4 cut(s) 154, 822, 1009, 1174
Bsp19I CCATGG 1 cut(s) 572
BspACI CCGC 1 cut(s) 878
BspANI GGCC 2 cut(s) 771, 1003
BspCNI CTCAG 4 cut(s) 412, 451, 877, 1039
BspLI GGNNCC 5 cut(s) 442, 669, 718, 1002, 1176
BspPI GGATC 2 cut(s) 1169, 1182
BspTNI GGTCTC 1 cut(s) 226
BsrI ACTGG 3 cut(s) 364, 727, 1045
BssECI CCNNGG 5 cut(s) 136, 137, 236, 572, 968
BssMI GATC 4 cut(s) 154, 822, 1009, 1174
BssNI GRCGYC 1 cut(s) 1284
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 2 cut(s) 969, 1179
Bst4CI ACNGT 6 cut(s) 164, 237, 382, 944, 962, 1019
Bst6I CTCTTC 1 cut(s) 663
BstACI GRCGYC 1 cut(s) 1284
BstC8I GCNNGC 3 cut(s) 10, 773, 878
BstDEI CTNAG 6 cut(s) 399, 459, 590, 864, 1026, 1271
BstDSI CCRYGG 2 cut(s) 236, 572
BstEII GGTNACC 1 cut(s) 1112
BstF5I GGATG 4 cut(s) 147, 255, 310, 540
BstHHI GCGC 1 cut(s) 1033
BstKTI GATC 4 cut(s) 157, 825, 1012, 1177
BstMAI GTCTC 3 cut(s) 226, 389, 1191
BstMBI GATC 4 cut(s) 154, 822, 1009, 1174
BstMCI CGRYCG 1 cut(s) 1012
BstMWI GCNNNNNNNGC 3 cut(s) 18, 777, 1077
BstNI CCWGG 2 cut(s) 969, 1179
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 5 cut(s) 136, 137, 334, 967, 1177
BstSFI CTRYAG 2 cut(s) 83, 1015
BstV1I GCAGC 2 cut(s) 191, 864
BstX2I RGATCY 1 cut(s) 1174
BstYI RGATCY 1 cut(s) 1174
Bsu36I CCTNAGG 1 cut(s) 1026
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 771, 1003
BtgI CCRYGG 2 cut(s) 236, 572
BtrI CACGTC 1 cut(s) 1185
BtsCI GGATG 4 cut(s) 147, 255, 310, 540
BtsIMutI CAGTG 2 cut(s) 169, 378
Cac8I GCNNGC 3 cut(s) 10, 773, 878
CfoI GCGC 1 cut(s) 1033
Cfr13I GGNCC 5 cut(s) 320, 441, 668, 716, 1001
Cfr9I CCCGGG 1 cut(s) 137
CseI GACGC 2 cut(s) 185, 476
Csp6I GTAC 2 cut(s) 568, 1224
CviAII CATG 2 cut(s) 152, 573
CviQI GTAC 2 cut(s) 568, 1224
DdeI CTNAG 6 cut(s) 399, 459, 590, 864, 1026, 1271
DpnI GATC 4 cut(s) 156, 824, 1011, 1176
DpnII GATC 4 cut(s) 154, 822, 1009, 1174
DrdI GACNNNNNNGTC 1 cut(s) 1283
DseDI GACNNNNNNGTC 1 cut(s) 1283
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 572
Eco31I GGTCTC 1 cut(s) 226
Eco32I GATATC 1 cut(s) 700
Eco47I GGWCC 4 cut(s) 320, 441, 668, 716
Eco81I CCTNAGG 1 cut(s) 1026
Eco88I CYCGRG 1 cut(s) 137
Eco91I GGTNACC 1 cut(s) 1112
EcoO109I RGGNCCY 2 cut(s) 441, 716
EcoO65I GGTNACC 1 cut(s) 1112
EcoRII CCWGG 2 cut(s) 967, 1177
EcoRV GATATC 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 1191
FaeI CATG 2 cut(s) 155, 576
FalI AAGNNNNNCTT 2 cut(s) 331, 363
FaqI GGGAC 1 cut(s) 454
FatI CATG 2 cut(s) 151, 572
FauI CCCGC 1 cut(s) 885
FbaI TGATCA 2 cut(s) 154, 822
FblI GTMKAC 2 cut(s) 168, 1156
Fnu4HI GCNGC 2 cut(s) 180, 853
FokI GGATG 4 cut(s) 134, 262, 317, 547
Fsp4HI GCNGC 2 cut(s) 180, 853
FspBI CTAG 3 cut(s) 102, 1119, 1194
GlaI GCGC 1 cut(s) 1032
GluI GCNGC 2 cut(s) 180, 853
GsuI CTGGAG 3 cut(s) 879, 951, 1028
HaeIII GGCC 2 cut(s) 771, 1003
HapII CCGG 3 cut(s) 138, 335, 783
HgaI GACGC 2 cut(s) 185, 476
HhaI GCGC 1 cut(s) 1033
Hin1I GRCGYC 1 cut(s) 1284
Hin1II CATG 2 cut(s) 155, 576
Hin6I GCGC 1 cut(s) 1031
HinP1I GCGC 1 cut(s) 1031
HinfI GANTC 5 cut(s) 47, 385, 397, 1158, 1267
HpaII CCGG 3 cut(s) 138, 335, 783
HphI GGTGA 7 cut(s) 106, 380, 422, 694, 784, 1049, 1124
Hpy166II GTNNAC 4 cut(s) 169, 1145, 1157, 1266
Hpy188I TCNGA 6 cut(s) 119, 159, 223, 231, 304, 460
Hpy188III TCNNGA 4 cut(s) 553, 662, 896, 1172
Hpy8I GTNNAC 4 cut(s) 169, 1145, 1157, 1266
Hpy99I CGWCG 1 cut(s) 1286
HpyAV CCTTC 5 cut(s) 181, 309, 333, 518, 1191
HpyCH4III ACNGT 6 cut(s) 164, 237, 382, 944, 962, 1019
HpyCH4IV ACGT 2 cut(s) 1184, 1284
HpyCH4V TGCA 7 cut(s) 21, 130, 179, 602, 780, 852, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 777, 1077
HpyF3I CTNAG 6 cut(s) 399, 459, 590, 864, 1026, 1271
HpySE526I ACGT 2 cut(s) 1184, 1284
Hsp92I GRCGYC 1 cut(s) 1284
Hsp92II CATG 2 cut(s) 155, 576
HspAI GCGC 1 cut(s) 1031
Ksp22I TGATCA 2 cut(s) 154, 822
Kzo9I GATC 4 cut(s) 154, 822, 1009, 1174
LmnI GCTCC 4 cut(s) 68, 193, 970, 1129
Lsp1109I GCAGC 2 cut(s) 191, 864
LweI GCATC 3 cut(s) 156, 570, 589
MaeI CTAG 3 cut(s) 102, 1119, 1194
MaeII ACGT 2 cut(s) 1184, 1284
MaeIII GTNAC 5 cut(s) 790, 802, 1019, 1112, 1241
MalI GATC 4 cut(s) 156, 824, 1011, 1176
MboI GATC 4 cut(s) 154, 822, 1009, 1174
MboII GAAGA 4 cut(s) 523, 574, 650, 772
MflI RGATCY 1 cut(s) 1174
MhlI GDGCHC 1 cut(s) 967
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 7 cut(s) 242, 673, 738, 871, 931, 980, 1230
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 3 cut(s) 391, 1152, 1261
MmeI TCCRAC 3 cut(s) 512, 737, 1085
Mox20I TGGCCA 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 132
MscI TGGCCA 1 cut(s) 771
MseI TTAA 3 cut(s) 260, 678, 828
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 771
MspI CCGG 3 cut(s) 138, 335, 783
MspR9I CCNGG 5 cut(s) 138, 139, 336, 969, 1179
Mva1269I GAATGC 3 cut(s) 103, 651, 979
MvaI CCWGG 2 cut(s) 969, 1179
MwoI GCNNNNNNNGC 3 cut(s) 18, 777, 1077
NciI CCSGG 3 cut(s) 138, 139, 336
NcoI CCATGG 1 cut(s) 572
NdeII GATC 4 cut(s) 154, 822, 1009, 1174
NlaIII CATG 2 cut(s) 155, 576
NlaIV GGNNCC 5 cut(s) 442, 669, 718, 1002, 1176
NmuCI GTSAC 3 cut(s) 790, 1112, 1241
NsiI ATGCAT 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 3 cut(s) 103, 651, 979
PfeI GAWTC 2 cut(s) 47, 385
PkrI GCNGC 2 cut(s) 181, 854
Ple19I CGATCG 1 cut(s) 1012
PleI GAGTC 3 cut(s) 391, 1152, 1261
PpsI GAGTC 3 cut(s) 391, 1152, 1261
PpuMI RGGWCCY 2 cut(s) 441, 716
Psp5II RGGWCCY 2 cut(s) 441, 716
Psp6I CCWGG 2 cut(s) 967, 1177
PspEI GGTNACC 1 cut(s) 1112
PspGI CCWGG 2 cut(s) 967, 1177
PspN4I GGNNCC 5 cut(s) 442, 669, 718, 1002, 1176
PspPI GGNCC 5 cut(s) 320, 441, 668, 716, 1001
PspPPI RGGWCCY 2 cut(s) 441, 716
PsuI RGATCY 1 cut(s) 1174
PvuI CGATCG 1 cut(s) 1012
RgaI GCGATCGC 1 cut(s) 1012
RsaI GTAC 2 cut(s) 569, 1225
RsaNI GTAC 2 cut(s) 568, 1224
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 3 cut(s) 260, 678, 828
SatI GCNGC 2 cut(s) 180, 853
Sau3AI GATC 4 cut(s) 154, 822, 1009, 1174
Sau96I GGNCC 5 cut(s) 320, 441, 668, 716, 1001
SchI GAGTC 3 cut(s) 391, 1152, 1261
ScrFI CCNGG 5 cut(s) 138, 139, 336, 969, 1179
SduI GDGCHC 1 cut(s) 967
SfaAI GCGATCGC 1 cut(s) 1012
SfaNI GCATC 3 cut(s) 156, 570, 589
SfcI CTRYAG 2 cut(s) 83, 1015
SgfI GCGATCGC 1 cut(s) 1012
SinI GGWCC 4 cut(s) 320, 441, 668, 716
SmaI CCCGGG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 7 cut(s) 242, 673, 738, 871, 931, 980, 1230
SsiI CCGC 1 cut(s) 878
SspMI CTAG 3 cut(s) 102, 1119, 1194
StyD4I CCNGG 5 cut(s) 136, 137, 334, 967, 1177
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 6 cut(s) 164, 237, 382, 944, 962, 1019
TaiI ACGT 2 cut(s) 1187, 1287
TaqI TCGA 3 cut(s) 560, 1215, 1281
TasI AATT 7 cut(s) 242, 673, 738, 871, 931, 980, 1230
TfiI GAWTC 2 cut(s) 47, 385
Tru1I TTAA 3 cut(s) 260, 678, 828
Tru9I TTAA 3 cut(s) 260, 678, 828
TscAI CASTG 2 cut(s) 169, 385
TseFI GTSAC 3 cut(s) 790, 1112, 1241
TseI GCWGC 2 cut(s) 179, 852
Tsp45I GTSAC 3 cut(s) 790, 1112, 1241
TspDTI ATGAA 2 cut(s) 383, 1266
TspMI CCCGGG 1 cut(s) 137
TspRI CASTG 2 cut(s) 169, 385
VpaK11BI GGWCC 4 cut(s) 320, 441, 668, 716
XapI RAATTY 3 cut(s) 673, 980, 1230
XmaI CCCGGG 1 cut(s) 137
XmiI GTMKAC 2 cut(s) 168, 1156
XspI CTAG 3 cut(s) 102, 1119, 1194
ZraI GACGTC 1 cut(s) 1285
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.