Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0019264

Physical Location & Seq

Genomic Coordinates Reverse (-)

2075461 .. 2076330

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1015700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCGTCTCAGACCTCCTCCCTCCAAAGCCTTACACTCCTTCCACCGAAAGCAGAGCCTCTCGACTTTTCCGTCCGAGTCGGTCTGCCAAGATGGAGCCGCTGACTCCCATTACACCCACCTCTTGCAGATGTGTCTGCAGCAATGCAAGTATATCAAAGCCCACAAGGTGTTCGACGAAATGCCTGAGAGGCTGCTGGCTCATGCTTCCAGAACCTGCAAGACTATCCACGCCCGCAGCTTGAAAATTGGGATTGCGTCCAAAGGGTTTCTGGGAAATGCCATTCTGGGTTTTTATGCTAAGTGTAGTAATGTGGGATGTGCCAAGAAGGCATTTAACTGCCTTGAAAGCAAGGATGTGTTTGCTTGGAACTCGGTTTTGTCAATGTATTCAAGTAAGGGATTGGTCGAACAGGTTGTTAAGTTGTTCGGGTCGATGTGGAATGACAGGGTAATGCCGAACGAGTTCACTTTTGCAATGGTTTTGTCTGCTTGTGCAAGATTGGTGGATGTTGAATATGGTAGGCAAGTTCATTGTGGTGTTATTAAAATGGGGTTTGAGTTGAGTTCATTTTGTGAAGGTGCACTCATTGATATGTATGCCAAAGGCAATTGTATAAGTGATGCTCGACAGATATTTGATGGTGTGTTGGAGTTGGATACAGTGGCTTGGACAACAATGATTTCAGGAGTTGGCGGTTTTCTGGACCAGGTAGGTTTTGTGACTGTCATAAATGCGTGTGTTGGTCTAGGTAGGCTAGATGATGCATGTGAGTTGTTTTCCCAGATGCCCAGTCCTAATGTTGTAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

271

Amino Acids

29.69

Weight (kDa)

8.2

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	118 - 167	3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019264)

Species	Orthologous Gene IDs
malus_domestica	MD10G1015700.v1.1
rosa_laevigata	RLG00000013332
rosa_multiflora	Rmu_sc0003539.1_g000001 Rmu_sc0003539.1_g000002 Rmu_sc0006244.1_g000051 Rmu_sc0006244.1_g000052
rosa_samantha	Rh6AG216700 Rh6CG224000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	224
AciI	CCGC	3 cut(s)	99, 235, 696
AdeI	CACNNNGTG	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	244, 347, 393, 515
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	582
AlwNI	CAGNNNCTG	1 cut(s)	216
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	3 cut(s)	139, 193, 237
Asp700I	GAANNNNTTC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	3 cut(s)	151, 180, 249
BccI	CCATC	2 cut(s)	86, 635
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	2 cut(s)	749, 758
BfmI	CTRYAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	652
BglI	GCCNNNNNGGC	2 cut(s)	190, 329
BisI	GCNGC	4 cut(s)	99, 140, 194, 238
BlsI	GCNGC	4 cut(s)	100, 141, 195, 239
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	710
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	3 cut(s)	613, 754, 777
BmuI	ACTGGG	1 cut(s)	786
Bse1I	ACTGG	1 cut(s)	792
Bse3DI	GCAATG	2 cut(s)	149, 483
BseBI	CCWGG	1 cut(s)	710
BseGI	GGATG	3 cut(s)	323, 361, 514
BseMI	GCAATG	2 cut(s)	149, 483
BseMII	CTCAG	2 cut(s)	22, 177
BseNI	ACTGG	1 cut(s)	792
BseRI	GAGGAG	1 cut(s)	6
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	3 cut(s)	151, 180, 249
BsiHKAI	GWGCWC	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	586
BspACI	CCGC	3 cut(s)	99, 235, 696
BspCNI	CTCAG	2 cut(s)	21, 178
BspLI	GGNNCC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	149, 483
BsrI	ACTGG	1 cut(s)	792
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	664, 727
BstC8I	GCNNGC	2 cut(s)	198, 235
BstDEI	CTNAG	3 cut(s)	8, 186, 300
BstF5I	GGATG	3 cut(s)	323, 361, 514
BstMAI	GTCTC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 329, 348
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	151, 180, 249
BsuI	GTATCC	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	323, 361, 514
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	198, 235
CaiI	CAGNNNCTG	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	706
CseI	GACGC	1 cut(s)	246
CsiI	ACCWGGT	1 cut(s)	708
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	2 cut(s)	203, 768
CviJI	RGCY	9 cut(s)	29, 57, 98, 161, 193, 200, 240, 668, 757
CviKI_1	RGCY	9 cut(s)	29, 57, 98, 161, 193, 200, 240, 668, 757
DdeI	CTNAG	3 cut(s)	8, 186, 300
DraIII	CACNNNGTG	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	708
EcoT22I	ATGCAT	1 cut(s)	769
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	206, 771
FaiI	YATR	9 cut(s)	153, 204, 297, 519, 596, 600, 617, 731, 769
FatI	CATG	2 cut(s)	202, 767
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	4 cut(s)	99, 140, 194, 238
FokI	GGATG	3 cut(s)	330, 368, 521
Fsp4HI	GCNGC	4 cut(s)	99, 140, 194, 238
FspBI	CTAG	2 cut(s)	749, 758
GluI	GCNGC	4 cut(s)	99, 140, 194, 238
HgaI	GACGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	206, 771
HinfI	GANTC	2 cut(s)	77, 104
Hpy166II	GTNNAC	2 cut(s)	468, 584
Hpy188I	TCNGA	2 cut(s)	11, 76
Hpy188III	TCNNGA	4 cut(s)	61, 210, 687, 704
Hpy8I	GTNNAC	2 cut(s)	468, 584
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	49, 322, 572
HpyCH4III	ACNGT	2 cut(s)	664, 727
HpyCH4V	TGCA	8 cut(s)	127, 139, 147, 219, 476, 497, 584, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 329, 348
HpyF3I	CTNAG	3 cut(s)	8, 186, 300
Hsp92II	CATG	2 cut(s)	206, 771
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	3 cut(s)	151, 180, 249
LweI	GCATC	3 cut(s)	613, 754, 777
MabI	ACCWGGT	1 cut(s)	708
MaeI	CTAG	2 cut(s)	749, 758
MaeIII	GTNAC	1 cut(s)	721
MfeI	CAATTG	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	2 cut(s)	246, 610
MlyI	GAGTC	2 cut(s)	86, 98
MmeI	TCCRAC	2 cut(s)	630, 636
MnlI	CCTC	6 cut(s)	24, 27, 31, 68, 131, 183
Mph1103I	ATGCAT	1 cut(s)	769
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	3 cut(s)	336, 420, 546
MslI	CAYNNNNRTG	2 cut(s)	537, 593
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	3 cut(s)	190, 329, 348
NlaIII	CATG	2 cut(s)	206, 771
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	100, 141, 195, 239
PleI	GAGTC	2 cut(s)	85, 98
PpsI	GAGTC	2 cut(s)	85, 98
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	706
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	537, 593
SaqAI	TTAA	3 cut(s)	336, 420, 546
SatI	GCNGC	4 cut(s)	99, 140, 194, 238
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	2 cut(s)	86, 98
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	1 cut(s)	586
SexAI	ACCWGGT	1 cut(s)	708
SfaNI	GCATC	3 cut(s)	613, 754, 777
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	2 cut(s)	537, 593
Sse9I	AATT	2 cut(s)	246, 610
SsiI	CCGC	3 cut(s)	99, 235, 696
SspMI	CTAG	2 cut(s)	749, 758
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	664, 727
TaqI	TCGA	5 cut(s)	62, 174, 408, 434, 628
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	246, 610
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	336, 420, 546
Tru9I	TTAA	3 cut(s)	336, 420, 546
TscAI	CASTG	1 cut(s)	669
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	3 cut(s)	139, 193, 237
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	2 cut(s)	521, 558
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	669
VneI	GTGCAC	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	706
XceI	RCATGY	1 cut(s)	771
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	2 cut(s)	749, 758
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.