Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019264

Physical Location & Seq

Genomic Coordinates Forward (+)

38837750 .. 38838106

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG216700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCGCCTCAGGCTTCCCTTCAAAACTTTACACTCCTTCAGCCAAAACCGCAGACTCTCATCTGAATCAACTCTCCTCTATGGAACCTGTGAGCCGCTCCCCACCCATCTCTTCCAAATTTTTCAAGAGCAATGCAGGCTTATCAAGGCCCACAAAGTGTGCGGTGAAATGTATGAAAGAGAGCTGGCTCAATCTTCAAGAACCTGCAAGGCTATCCATGCCCAGGGCTTGAAATTTGAAGTTGGGTCGAAAGGGTTGCTAGGAAATGCTATTGTGGGTTTTTATGCCAAGTGTGGTAACTTGGGCTATGCTGAGAAGGCATTTAATTGCCGTGATAACAAGGATGTGTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

118

Amino Acids

13.36

Weight (kDa)

9.28

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019264)

Species	Orthologous Gene IDs
malus_domestica	MD10G1015700.v1.1
rosa_laevigata	RLG00000013332
rosa_multiflora	Rmu_sc0003539.1_g000001 Rmu_sc0003539.1_g000002 Rmu_sc0006244.1_g000051 Rmu_sc0006244.1_g000052
rosa_samantha	Rh6AG216700 Rh6CG224000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	3 cut(s)	49, 95, 162
AcsI	RAATTY	2 cut(s)	117, 233
AcuI	CTGAAG	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	22, 125, 198, 232, 239
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	117, 233
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	8
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	222, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	222, 223
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	22, 303
BseRI	GAGGAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	49, 95, 162
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	21, 304
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	222, 223
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	137, 186
BstDEI	CTNAG	2 cut(s)	8, 312
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 48, 136, 218, 317
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	137, 186
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	148
CviAII	CATG	1 cut(s)	218
DdeI	CTNAG	2 cut(s)	8, 312
DraIII	CACNNNGTG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	221
FaiI	YATR	5 cut(s)	81, 174, 219, 285, 309
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	54, 65
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	125, 198
HpyAV	CCTTC	3 cut(s)	28, 46, 310
HpyCH4V	TGCA	2 cut(s)	135, 207
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 48, 136, 218, 317
HpyF3I	CTNAG	2 cut(s)	8, 312
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	6 cut(s)	100, 121, 170, 209, 217, 236
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	296
MbiI	CCGCTC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	103, 186
MluCI	AATT	3 cut(s)	117, 233, 325
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	2 cut(s)	17, 86
MseI	TTAA	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	10, 48, 136, 218, 317
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	85
PasI	CCCWGGG	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	95
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	3 cut(s)	89, 186, 206
Sse9I	AATT	3 cut(s)	117, 233, 325
SsiI	CCGC	3 cut(s)	49, 95, 162
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	222
TaqI	TCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	117, 233, 325
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	189
XapI	RAATTY	2 cut(s)	117, 233
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.