Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019264

Physical Location & Seq

Genomic Coordinates Forward (+)

37381008 .. 37381517

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCGCCTCAGGCTTCCCTTCAAAACTTTACACTCCTTCAGCCAAAACCACAGACTCTCATCCGAATCAACTCTCCCCTATGGAACCCCTGAGCCGCTCCCTACCCATCTCTTCCAAATTTGTCAAGAACAATGCAGGCTTATCAAGACCCACAAAGTGCGTGGTGAAATGTCTGAAAGAGAGCTGGCTCAATCTTCAAGAACCTGCAAGGCTATCCATGCCCAGGGCTTGAAATTTGAAGTTGGGTCGAAAGGGTTGCTAGGAAATGCTATTGTGGGTTATTATGCCAAGTGTGGTAACCTGGGCTATGCCAAGAAGGCATTTAATTGCCTTGATAACAAGGATGTGTTTGCTTGGAACTCTGTCTTGTCGATGTATTCAAATAAGGGATTGCTCGAGCAGGTTTTTAACTCATTTGAGTCAATGTGGAAATGCAACGTTTTGCCGAATGAGTTCACGTTTGCAATGGTCTTGTCTGCTTGTACAAGATTGGTGAATAGAGTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

169

Amino Acids

19.23

Weight (kDa)

9.35

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 162	2.7e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019264)

Species	Orthologous Gene IDs
malus_domestica	MD10G1015700.v1.1
rosa_laevigata	RLG00000013332
rosa_multiflora	Rmu_sc0003539.1_g000001 Rmu_sc0003539.1_g000002 Rmu_sc0006244.1_g000051 Rmu_sc0006244.1_g000052
rosa_samantha	Rh6AG216700 Rh6CG224000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	212, 391
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	1 cut(s)	95
AclI	AACGTT	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	117, 233
AcuI	CTGAAG	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	22, 198, 232, 239, 381
AjnI	CCWGG	2 cut(s)	222, 300
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	117, 233
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	176, 505
AvaI	CYCGRG	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	8
BccI	CCATC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	2 cut(s)	224, 302
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	2 cut(s)	212, 391
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	224, 302
BmeT110I	CYCGRG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	224, 302
Bpu10I	CCTNAGC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	222, 223, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	224, 302
BseDI	CCNNGG	3 cut(s)	222, 223, 301
BseGI	GGATG	2 cut(s)	59, 349
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	2 cut(s)	22, 81
BsiHKCI	CYCGRG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	482
BspACI	CCGC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	21, 82
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	2 cut(s)	212, 391
BsrBI	CCGCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	222, 223, 301
Bst2UI	CCWGG	2 cut(s)	224, 302
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	137, 186
BstDEI	CTNAG	2 cut(s)	8, 90
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	59, 349
BstHHI	GCGC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 218, 317
BstNI	CCWGG	2 cut(s)	224, 302
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	222, 300
Bsu36I	CCTNAGG	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	59, 349
BveI	ACCTGC	2 cut(s)	212, 391
Cac8I	GCNNGC	2 cut(s)	137, 186
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	483
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	9 cut(s)	13, 42, 94, 139, 184, 188, 212, 228, 306
CviKI_1	RGCY	9 cut(s)	13, 42, 94, 139, 184, 188, 212, 228, 306
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	2 cut(s)	8, 90
DraIII	CACNNNGTG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	222, 300
FaeI	CATG	1 cut(s)	221
FaiI	YATR	5 cut(s)	81, 219, 285, 309, 505
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	46, 356
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	54, 65, 419
HphI	GGTGA	2 cut(s)	176, 505
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	2 cut(s)	64, 175
Hpy188III	TCNNGA	3 cut(s)	125, 145, 198
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	3 cut(s)	28, 46, 310
HpyCH4IV	ACGT	2 cut(s)	438, 458
HpyCH4V	TGCA	4 cut(s)	135, 207, 435, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 218, 317
HpyF3I	CTNAG	2 cut(s)	8, 90
HpySE526I	ACGT	2 cut(s)	438, 458
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	9 cut(s)	102, 121, 170, 209, 217, 236, 287, 314, 386
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	438, 458
MaeIII	GTNAC	1 cut(s)	296
MbiI	CCGCTC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	103, 186
MluCI	AATT	3 cut(s)	117, 233, 325
MlyI	GAGTC	2 cut(s)	48, 428
MnlI	CCTC	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	2 cut(s)	324, 408
MspR9I	CCNGG	2 cut(s)	224, 302
MvaI	CCWGG	2 cut(s)	224, 302
MwoI	GCNNNNNNNGC	3 cut(s)	10, 218, 317
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	395
PasI	CCCWGGG	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	2 cut(s)	48, 427
PpsI	GAGTC	2 cut(s)	48, 427
Psp1406I	AACGTT	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	222, 300
PspEI	GGTNACC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	222, 300
PspN4I	GGNNCC	1 cut(s)	85
PspXI	VCTCGAGB	1 cut(s)	395
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	324, 408
SatI	GCNGC	1 cut(s)	95
SchI	GAGTC	2 cut(s)	48, 428
ScrFI	CCNGG	2 cut(s)	224, 302
SetI	ASST	6 cut(s)	186, 206, 303, 405, 441, 461
Sfr274I	CTCGAG	1 cut(s)	395
SlaI	CTCGAG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	3 cut(s)	117, 233, 325
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	222, 300
TaiI	ACGT	2 cut(s)	441, 461
TaqI	TCGA	3 cut(s)	248, 371, 396
TasI	AATT	3 cut(s)	117, 233, 325
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	324, 408
Tru9I	TTAA	2 cut(s)	324, 408
XapI	RAATTY	2 cut(s)	117, 233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.