Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019264

Physical Location & Seq

Genomic Coordinates Reverse (-)

29968997 .. 29969845

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGTCAATGCGCCTCAGGCTTCCCTTCAAAACTTTACACTCCTTCAGCCAAAACCGTAGACTCTCATCCGAATCAACTCTCCCCTATGGAACCCCTAAGCCGCTCCCTACTTATCTCTTCCAAATTTGTCGAGAACAATGCAGGCTTATCTAGACCCATAAAGTGTGCGGTGAAATGTCTAAAAGAGAGCTGGCTCAATCTTCTAGAACCTGCAAGGGCATTTAATTGCCTTGATAACAAGGATGTGTTTGCTTGGAACTCTGTCTTGTCGATGTATTCAAATAAGGGATTGCTCGAGCAGGTTTTTAACTTATTTGAGTCAATGTGGAAATGCAAGGTTTTGCCGAATGAGTTCACGTTTGCAATGGTCTTGTCTGCTTGTACAAGATTGGTGAATATAGAGTATGGTAGACAAGTTCATTGCTGTGTTATTAAGATGGGGCTTGAGTTGATATCATTCTGTCAAGGTGCACTTATTAATATGTATGCCAAGTGCAATTGTATAAGTGATGCTCGGCAGATATTTGACATTGCGGTGGAGTTGGATACTGTCGCTTGGACAACAATGATTTCAAGGTATGTTCAAGTTAAGCTACTTGAGGAAGCACTTAAAGTGTTTAAGGAGATGCAAAAAATTGGCAGTGTTCTAGACCAAATGGCCTATGTGACTATCATAAATGCATGTGTTGGTCTAGGAAGGCTAGATGATGCATGTGACTTGTTCTCACAGATGCTCAATCCAAATGATGTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

253

Amino Acids

28.23

Weight (kDa)

6.71

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	81 - 129	4.7e-11	PPR repeat family
PPR_2	PF13041	183 - 229	6.9e-10	PPR repeat family
PPR	PF01535	185 - 214	4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019264)

Species	Orthologous Gene IDs
malus_domestica	MD10G1015700.v1.1
rosa_laevigata	RLG00000013332
rosa_multiflora	Rmu_sc0003539.1_g000001 Rmu_sc0003539.1_g000002 Rmu_sc0006244.1_g000051 Rmu_sc0006244.1_g000052
rosa_samantha	Rh6AG216700 Rh6CG224000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	220, 292
AccBSI	CCGCTC	1 cut(s)	105
AccI	GTMKAC	2 cut(s)	60, 412
AciI	CCGC	3 cut(s)	103, 170, 536
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	385
AgsI	TTSAA	4 cut(s)	30, 282, 576, 587
AluBI	AGCT	2 cut(s)	192, 595
AluI	AGCT	2 cut(s)	192, 595
Alw21I	GWGCWC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	471
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	660
ApaLI	GTGCAC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	125
AseI	ATTAAT	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	184, 406
AvaI	CYCGRG	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	475
BccI	CCATC	1 cut(s)	433
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciVI	GTATCC	1 cut(s)	541
BfaI	CTAG	5 cut(s)	153, 206, 650, 695, 704
BfuAI	ACCTGC	2 cut(s)	220, 292
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	4 cut(s)	502, 618, 700, 723
Bpu10I	CCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	467, 620
Bse21I	CCTNAGG	1 cut(s)	16
Bse3DI	GCAATG	3 cut(s)	372, 421, 531
BseGI	GGATG	2 cut(s)	67, 250
BseMI	GCAATG	3 cut(s)	372, 421, 531
BseMII	CTCAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	475
BshFI	GGCC	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	296
BsnI	GGCC	1 cut(s)	662
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	383
BspACI	CCGC	3 cut(s)	103, 170, 536
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	93
BspMI	ACCTGC	2 cut(s)	220, 292
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	3 cut(s)	372, 421, 531
BsrGI	TGTACA	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	58, 553
Bst6I	CTCTTC	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	145, 194
BstDEI	CTNAG	2 cut(s)	16, 98
BstF5I	GGATG	2 cut(s)	67, 250
BstHHI	GCGC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNSI	RCATGY	2 cut(s)	687, 717
BstSLI	GKGCMC	1 cut(s)	475
Bsu36I	CCTNAGG	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	67, 250
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
BveI	ACCTGC	2 cut(s)	220, 292
Cac8I	GCNNGC	2 cut(s)	145, 194
CfoI	GCGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	384
CspCI	CAANNNNNGTGG	1 cut(s)	732
CviAII	CATG	2 cut(s)	684, 714
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	2 cut(s)	16, 98
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	456
EcoT22I	ATGCAT	2 cut(s)	685, 715
FaeI	CATG	2 cut(s)	687, 717
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FatI	CATG	2 cut(s)	683, 713
FblI	GTMKAC	2 cut(s)	60, 412
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	2 cut(s)	54, 257
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	5 cut(s)	153, 206, 650, 695, 704
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	687, 717
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	4 cut(s)	4, 62, 73, 320
HphI	GGTGA	2 cut(s)	184, 406
Hpy166II	GTNNAC	4 cut(s)	61, 357, 413, 473
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	4 cut(s)	133, 153, 206, 650
Hpy8I	GTNNAC	4 cut(s)	61, 357, 413, 473
HpyAV	CCTTC	3 cut(s)	36, 54, 693
HpyCH4III	ACNGT	2 cut(s)	58, 553
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	9 cut(s)	143, 215, 336, 365, 473, 498, 631, 683, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	2 cut(s)	16, 98
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	2 cut(s)	687, 717
HspAI	GCGC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	5 cut(s)	3, 129, 178, 225, 287
LweI	GCATC	4 cut(s)	502, 618, 700, 723
MaeI	CTAG	5 cut(s)	153, 206, 650, 695, 704
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	667, 716
MbiI	CCGCTC	1 cut(s)	105
MboII	GAAGA	2 cut(s)	111, 194
MfeI	CAATTG	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	4 cut(s)	125, 226, 499, 636
MlyI	GAGTC	3 cut(s)	13, 56, 329
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	2 cut(s)	25, 595
Mph1103I	ATGCAT	2 cut(s)	685, 715
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	7 cut(s)	225, 309, 435, 480, 591, 612, 621
MslI	CAYNNNNRTG	2 cut(s)	426, 536
MunI	CAATTG	1 cut(s)	499
MwoI	GCNNNNNNNGC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	687, 717
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	2 cut(s)	667, 716
NsiI	ATGCAT	2 cut(s)	685, 715
NspI	RCATGY	2 cut(s)	687, 717
PaeR7I	CTCGAG	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	3 cut(s)	12, 56, 328
PpsI	GAGTC	3 cut(s)	12, 56, 328
PshBI	ATTAAT	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	93
PspXI	VCTCGAGB	1 cut(s)	296
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	2 cut(s)	426, 536
SaqAI	TTAA	7 cut(s)	225, 309, 435, 480, 591, 612, 621
SatI	GCNGC	1 cut(s)	103
SchI	GAGTC	3 cut(s)	13, 56, 329
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	8 cut(s)	194, 214, 306, 342, 362, 472, 581, 597
SfaNI	GCATC	4 cut(s)	502, 618, 700, 723
Sfr274I	CTCGAG	1 cut(s)	296
SlaI	CTCGAG	1 cut(s)	296
SmiMI	CAYNNNNRTG	2 cut(s)	426, 536
SmlI	CTYRAG	3 cut(s)	296, 446, 599
SmoI	CTYRAG	3 cut(s)	296, 446, 599
Sse9I	AATT	4 cut(s)	125, 226, 499, 636
SsiI	CCGC	3 cut(s)	103, 170, 536
SspMI	CTAG	5 cut(s)	153, 206, 650, 695, 704
TaaI	ACNGT	2 cut(s)	58, 553
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	3 cut(s)	132, 272, 297
TasI	AATT	4 cut(s)	125, 226, 499, 636
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	7 cut(s)	225, 309, 435, 480, 591, 612, 621
Tru9I	TTAA	7 cut(s)	225, 309, 435, 480, 591, 612, 621
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	2 cut(s)	667, 716
Tsp45I	GTSAC	2 cut(s)	667, 716
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	471
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	1 cut(s)	125
XbaI	TCTAGA	3 cut(s)	152, 205, 649
XceI	RCATGY	2 cut(s)	687, 717
XhoI	CTCGAG	1 cut(s)	296
XmiI	GTMKAC	2 cut(s)	60, 412
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	5 cut(s)	153, 206, 650, 695, 704
Zsp2I	ATGCAT	2 cut(s)	685, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.