Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003539.1

Orthogroup ID

OG0019264

Physical Location & Seq

Genomic Coordinates Forward (+)

379 .. 735

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003539.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgcacctcaggcttcccttcaaaactttacactccttcagccaaaaccgcagactctcatctgaatcaactctcccctatggaacctgtgagccgctccccacccatctcttccaaatttgtcaagagcaatgcaggcttatcaaggcccacaaagtgtgcggtgaaatgtctgaaagagagctggctcaatcttcaagaacctgcaaggctatccatgcccagggcttgaaatttgaagttgggtcgaaaaggttgctaggaaatgctattgtgggtttttatgccaagtgtggtaacctgggctatgctgagaaggcatttaattgccgtgataacaaggatgtgtttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

9.21

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019264)

Species	Orthologous Gene IDs
malus_domestica	MD10G1015700.v1.1
rosa_laevigata	RLG00000013332
rosa_multiflora	Rmu_sc0003539.1_g000001 Rmu_sc0003539.1_g000002 Rmu_sc0006244.1_g000051 Rmu_sc0006244.1_g000052
rosa_samantha	Rh6AG216700 Rh6CG224000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	3 cut(s)	49, 95, 162
AcsI	RAATTY	2 cut(s)	117, 233
AcuI	CTGAAG	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	22, 198, 232, 239
AjnI	CCWGG	2 cut(s)	222, 300
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	117, 233
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	8
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	2 cut(s)	224, 302
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	224, 302
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	224, 302
BsaJI	CCNNGG	3 cut(s)	222, 223, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	224, 302
BseDI	CCNNGG	3 cut(s)	222, 223, 301
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	22, 303
BshFI	GGCC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	49, 95, 162
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	21, 304
BspLI	GGNNCC	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	222, 223, 301
Bst2UI	CCWGG	2 cut(s)	224, 302
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	137, 186
BstDEI	CTNAG	2 cut(s)	8, 312
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 48, 136, 218, 317
BstNI	CCWGG	2 cut(s)	224, 302
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	222, 300
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	137, 186
Cfr13I	GGNCC	1 cut(s)	148
CviAII	CATG	1 cut(s)	218
DdeI	CTNAG	2 cut(s)	8, 312
DraIII	CACNNNGTG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	222, 300
FaeI	CATG	1 cut(s)	221
FaiI	YATR	4 cut(s)	81, 219, 285, 309
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	2 cut(s)	54, 65
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	64, 175
Hpy188III	TCNNGA	2 cut(s)	125, 198
HpyAV	CCTTC	3 cut(s)	28, 46, 310
HpyCH4V	TGCA	3 cut(s)	4, 135, 207
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 48, 136, 218, 317
HpyF3I	CTNAG	2 cut(s)	8, 312
Hsp92II	CATG	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	8 cut(s)	100, 121, 170, 209, 217, 236, 287, 314
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	296
MbiI	CCGCTC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	103, 186
MluCI	AATT	3 cut(s)	117, 233, 325
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	224, 302
MvaI	CCWGG	2 cut(s)	224, 302
MwoI	GCNNNNNNNGC	5 cut(s)	10, 48, 136, 218, 317
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	85
PasI	CCCWGGG	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	222, 300
PspEI	GGTNACC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	222, 300
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	95
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	224, 302
SetI	ASST	6 cut(s)	9, 89, 186, 206, 257, 303
Sse9I	AATT	3 cut(s)	117, 233, 325
SsiI	CCGC	3 cut(s)	49, 95, 162
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	222, 300
TaqI	TCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	117, 233, 325
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
XapI	RAATTY	2 cut(s)	117, 233
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.