MD10G1102700.v1.1

Somatic embryogenesis receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0015530
Physical Location & Seq
Forward (+)
16712772 .. 16715577
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1102700.v1.1.491

Sequence Viewer

Length: 714 bp
ATGTTTTTGTTTCTTCGATTTTTCTCTTCTCTTCTCAAAGTTCTTGGCATTTCCTCTGCTTTTCATTTCTCTCCAATGGCTCCTCTCTCCTTGCAAACTTTCTCTCTCACCTTCCTCTTCTTTCTCTCTCTTGCCCTCTCCACAAACTCCGAAGGAAATGCTTTGCATGCTCTGAGAAGCAGACTCGTCGATGCCAACAACGTTCTGCAGAGCTGGGACCCAACGCTGGTCAATCCCTGCACCTGGTTCCATGTTACCTGTGATTCCAATAACCATGTGATCCGATTGGATTTGGGCAACTCCAACATTTCTGGGAGTTTGGGGCCAGAGATCGGGCAGCTGAAGCACCTGCAGTACTTGGAACTTTATAGAAATGACATAAGTGGTAAAATCCCAGAGGAGTTGGGGAGCTTGAAAAACCTTGTTAGCATGGATTTGTATGGCAATAGATTTGAAGGGGAAATTCCGAAATCTTTCGCCAATTTGAAGTCACTCACATTTCTGCGACTAAACAACAACAAACTAACAGGATCTATTCCGAGGGAACTCGTCGGCCTCTCTAACCTCAAAGTTTTTGATGTATCCAACAATGATCTGTGTGGAACAATTCCGGTTGATGGCTCATTTGGGACTTTCCCAATGGAAAGCTTCGAAAACAACAGACTTAACGGCCCAGAGCTGAAAGGACTGGTATCCTACGACTTTGGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007030 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010033 GO:0010152 GO:0010154 GO:0010227 GO:0010256 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0021700 GO:0022402 GO:0022414 GO:0023052 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033612 GO:0033993 GO:0034293 GO:0036211 GO:0038023 GO:0042175 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046777 GO:0048229 GO:0048236 GO:0048316 GO:0048367 GO:0048437 GO:0048545 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0098827 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

238

Amino Acids

26.3

Weight (kDa)

5.94

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 49 - 88 3.6e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 95 - 151 3e-06 Leucine rich repeat
LRR_14 PF23598 96 - 194 8.2e-13 Leucine-rich repeat region
LRR_8 PF13855 156 - 199 5.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015530)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03940
malus_domestica MD05G1096400.v1.1 MD10G1102700.v1.1
prunus_persica Prupe.8G140900_v2.0.a1
pyrus_communis pycom05g09520
rosa_chinensis RchiOBHm_Chr6g0252991
rosa_laevigata RLG00000015046
rosa_multiflora Rmu_co8514715.1_g000001 Rmu_sc0002560.1_g000007
rosa_roxburghii Rroxscaffold_7G00212240
rosa_rugosa Rorug05G0542400
rosa_samantha Rh6AG056500 Rh6BG050900 Rh6CG048800 Rh6DG044500
rosa_wichuraiana Rw6G005160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 357
AclI AACGTT 1 cut(s) 201
AclWI GGATC 2 cut(s) 274, 538
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 4 cut(s) 226, 243, 332, 617
AgsI TTSAA 3 cut(s) 415, 455, 487
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 5 cut(s) 213, 340, 411, 648, 679
AluI AGCT 5 cut(s) 213, 340, 411, 648, 679
AlwI GGATC 2 cut(s) 274, 538
AoxI GGCC 3 cut(s) 323, 553, 670
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 473
AspS9I GGNCC 3 cut(s) 217, 323, 671
AsuHPI GGTGA 1 cut(s) 100
AsuII TTCGAA 1 cut(s) 651
AvaII GGWCC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 611
BceAI ACGGC 1 cut(s) 685
BcgI CGANNNNNNTGC 4 cut(s) 140, 169, 174, 203
BciT130I CCWGG 1 cut(s) 244
BciVI GTATCC 2 cut(s) 592, 703
BfmI CTRYAG 2 cut(s) 206, 350
BfuAI ACCTGC 1 cut(s) 357
BfuI GTATCC 2 cut(s) 592, 703
BisI GCNGC 1 cut(s) 338
BlsI GCNGC 1 cut(s) 339
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 217, 323, 671
BmiI GGNNCC 5 cut(s) 81, 218, 219, 248, 324
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 539
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 243, 332, 617
Bse1I ACTGG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 539
BseLI CCNNNNNNNGG 4 cut(s) 226, 243, 332, 617
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 2 cut(s) 72, 413
BseXI GCAGC 1 cut(s) 349
BseYI CCCAGC 1 cut(s) 213
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 3 cut(s) 325, 555, 672
BsiSI CCGG 1 cut(s) 611
BslFI GGGAC 2 cut(s) 230, 643
BslI CCNNNNNNNGG 4 cut(s) 226, 243, 332, 617
BsmFI GGGAC 2 cut(s) 230, 643
BsnI GGCC 3 cut(s) 325, 555, 672
Bsp119I TTCGAA 1 cut(s) 651
Bsp143I GATC 4 cut(s) 279, 330, 530, 592
BspANI GGCC 3 cut(s) 325, 555, 672
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 5 cut(s) 81, 218, 219, 248, 324
BspMAI CTGCAG 2 cut(s) 210, 354
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 274, 538
BspT104I TTCGAA 1 cut(s) 651
BsrI ACTGG 1 cut(s) 693
BssECI CCNNGG 1 cut(s) 539
BssMI GATC 4 cut(s) 279, 330, 530, 592
Bst2UI CCWGG 1 cut(s) 244
Bst6I CTCTTC 3 cut(s) 31, 36, 122
BstBI TTCGAA 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 173
BstKTI GATC 4 cut(s) 282, 333, 533, 595
BstMBI GATC 4 cut(s) 279, 330, 530, 592
BstMWI GCNNNNNNNGC 2 cut(s) 167, 343
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 206, 350
BstV1I GCAGC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BsuI GTATCC 2 cut(s) 592, 703
BsuRI GGCC 3 cut(s) 325, 555, 672
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 217, 323, 671
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 1 cut(s) 355
CviAII CATG 4 cut(s) 167, 251, 275, 430
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 173
DpnI GATC 4 cut(s) 281, 332, 532, 594
DpnII GATC 4 cut(s) 279, 330, 530, 592
Eam1104I CTCTTC 3 cut(s) 31, 36, 122
EarI CTCTTC 3 cut(s) 31, 36, 122
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 242
FaeI CATG 4 cut(s) 170, 254, 278, 433
FaiI YATR 7 cut(s) 168, 252, 276, 369, 380, 431, 441
FaqI GGGAC 2 cut(s) 230, 643
FatI CATG 4 cut(s) 166, 250, 274, 429
Fnu4HI GCNGC 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 338
GsaI CCCAGC 1 cut(s) 217
HaeIII GGCC 3 cut(s) 325, 555, 672
HapII CCGG 1 cut(s) 611
Hin1II CATG 4 cut(s) 170, 254, 278, 433
HindIII AAGCTT 1 cut(s) 646
HinfI GANTC 2 cut(s) 183, 263
HpaII CCGG 1 cut(s) 611
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 5 cut(s) 151, 174, 284, 468, 540
Hpy99I CGWCG 2 cut(s) 191, 554
HpyAV CCTTC 3 cut(s) 121, 146, 449
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 94, 166, 208, 240, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 343
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 4 cut(s) 170, 254, 278, 433
KflI GGGWCCC 1 cut(s) 217
Kzo9I GATC 4 cut(s) 279, 330, 530, 592
LmnI GCTCC 2 cut(s) 85, 408
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 181
MabI ACCWGGT 1 cut(s) 242
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 253, 489
MalI GATC 4 cut(s) 281, 332, 532, 594
MboI GATC 4 cut(s) 279, 330, 530, 592
MboII GAAGA 4 cut(s) 5, 18, 23, 109
MflI RGATCY 1 cut(s) 530
MluCI AATT 3 cut(s) 462, 481, 606
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 2 cut(s) 327, 609
MnlI CCTC 8 cut(s) 64, 93, 125, 146, 391, 534, 566, 575
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 167, 343
NdeII GATC 4 cut(s) 279, 330, 530, 592
NlaIII CATG 4 cut(s) 170, 254, 278, 433
NlaIV GGNNCC 5 cut(s) 81, 218, 219, 248, 324
NmuCI GTSAC 1 cut(s) 489
NspI RCATGY 1 cut(s) 170
NspV TTCGAA 1 cut(s) 651
PaeI GCATGC 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 339
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PpuMI RGGWCCY 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 5 cut(s) 81, 218, 219, 248, 324
PspPI GGNCC 3 cut(s) 217, 323, 671
PspPPI RGGWCCY 1 cut(s) 217
PstI CTGCAG 2 cut(s) 210, 354
PsuI RGATCY 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 1 cut(s) 338
Sau3AI GATC 4 cut(s) 279, 330, 530, 592
Sau96I GGNCC 3 cut(s) 217, 323, 671
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 244
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 2 cut(s) 206, 350
SfuI TTCGAA 1 cut(s) 651
SinI GGWCC 1 cut(s) 217
SphI GCATGC 1 cut(s) 170
Sse9I AATT 3 cut(s) 462, 481, 606
StyD4I CCNGG 1 cut(s) 242
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 16, 189, 651
TasI AATT 3 cut(s) 462, 481, 606
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 1 cut(s) 337
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 473
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.