Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015530

Physical Location & Seq

Genomic Coordinates Reverse (-)

62658339 .. 62660993

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTCTTCTCCTCTCTCCCTAGTCTCTTTCTCTCTAACCTTCCTCTTCTTCCTGTCTCCTGCCTTGTCTACAAACTCTGAAGGAAATGCTTTGCATGCTTTGAGAAGTAGGTTCAATGATGCCACCAATGTTCTTCAGAGTTGGGACCCAACTCTGGTCAATCCCTGCACCTGGTTCCATGTTACCTGTGATGCTAATAACCATGTGATCCGTTTGGATTTGGGCAACTCTAACATTTCTGGGTCTTTGGGGCCAGAGCTTGGGCAGCTGAAGCACCTGGAATACTTGGAGCTTTATAGAAATGATATAGGAGGTAAAATCCCAAAGGAGTTGGGGAATTTGAAAAACCTTGTCAGCATGGATTTGTATGGCAACAGATTTGAAGGGAAAATCCCAAAATCTTTCTCCAAGTTGAAGTCACTCAGATTCCTGAGGCTAAACAACAATAAACTGTCAGGATCTATTCCAAGGGAACTCACCGGCCTCTCTAACCTCAAAGTTTTGATGTTTCGAACAATGATCTATGCGGAACTATTCCAGTTGATGGCCCATTTAGCACCTTCTCAATGGAAAGTTTTGAGAACAACAGACTCAGTGGCCCAGAGCTGCAAGGACTGGTACCATATGACTTCGGGTGCTGAAGAAAAGCTGGAATTCGTTTATCATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007030 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010033 GO:0010152 GO:0010154 GO:0010227 GO:0010256 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0021700 GO:0022402 GO:0022414 GO:0023052 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033612 GO:0033993 GO:0034293 GO:0036211 GO:0038023 GO:0042175 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046777 GO:0048229 GO:0048236 GO:0048316 GO:0048367 GO:0048437 GO:0048545 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0098827 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

224

Amino Acids

25.27

Weight (kDa)

8.96

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	2.4e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 180	4.3e-13	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03940
malus_domestica	MD05G1096400.v1.1 MD10G1102700.v1.1
prunus_persica	Prupe.8G140900_v2.0.a1
pyrus_communis	pycom05g09520
rosa_chinensis	RchiOBHm_Chr6g0252991
rosa_laevigata	RLG00000015046
rosa_multiflora	Rmu_co8514715.1_g000001 Rmu_sc0002560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00212240
rosa_rugosa	Rorug05G0542400
rosa_samantha	Rh6AG056500 Rh6BG050900 Rh6CG048800 Rh6DG044500
rosa_wichuraiana	Rw6G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	621
AccB1I	GGYRCC	1 cut(s)	621
AccB7I	CCANNNNNTGG	2 cut(s)	263, 547
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	2 cut(s)	205, 469
AcsI	RAATTY	2 cut(s)	340, 656
AcuI	CTGAAG	4 cut(s)	102, 122, 293, 663
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 547
AgsI	TTSAA	4 cut(s)	118, 346, 386, 418
AjnI	CCWGG	2 cut(s)	173, 279
AluBI	AGCT	5 cut(s)	262, 271, 295, 609, 652
AluI	AGCT	5 cut(s)	262, 271, 295, 609, 652
Alw26I	GTCTC	2 cut(s)	31, 63
AlwI	GGATC	2 cut(s)	205, 469
AoxI	GGCC	4 cut(s)	254, 484, 549, 600
ApeKI	GCWGC	2 cut(s)	268, 609
ApoI	RAATTY	2 cut(s)	340, 656
Asp718I	GGTACC	1 cut(s)	621
AspS9I	GGNCC	4 cut(s)	148, 254, 550, 601
AsuHPI	GGTGA	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	280, 596
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	2 cut(s)	175, 281
BcoDI	GTCTC	2 cut(s)	31, 63
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	269, 610
BlsI	GCNGC	2 cut(s)	270, 611
Bme1390I	CCNGG	2 cut(s)	175, 281
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	4 cut(s)	148, 254, 550, 601
BmiI	GGNNCC	5 cut(s)	149, 150, 179, 255, 623
BmrFI	CCNGG	2 cut(s)	175, 281
BmsI	GCATC	2 cut(s)	112, 184
Bpu14I	TTCGAA	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 547
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	541, 623
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	175, 281
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 547
BseMII	CTCAG	3 cut(s)	425, 439, 609
BseNI	ACTGG	2 cut(s)	541, 623
BseXI	GCAGC	2 cut(s)	280, 596
BsgI	GTGCAG	1 cut(s)	154
BshFI	GGCC	4 cut(s)	256, 486, 551, 602
BshNI	GGYRCC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	4 cut(s)	157, 174, 263, 547
BsmAI	GTCTC	2 cut(s)	31, 63
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	4 cut(s)	256, 486, 551, 602
Bsp119I	TTCGAA	1 cut(s)	514
Bsp143I	GATC	3 cut(s)	210, 461, 522
BspACI	CCGC	1 cut(s)	530
BspANI	GGCC	4 cut(s)	256, 486, 551, 602
BspCNI	CTCAG	3 cut(s)	426, 438, 608
BspLI	GGNNCC	5 cut(s)	149, 150, 179, 255, 623
BspPI	GGATC	2 cut(s)	205, 469
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	541, 623
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	210, 461, 522
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	175, 281
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	425, 434, 595
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	3 cut(s)	213, 464, 525
BstMAI	GTCTC	2 cut(s)	31, 63
BstMBI	GATC	3 cut(s)	210, 461, 522
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 268, 274, 557
BstNI	CCWGG	2 cut(s)	175, 281
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	173, 279
BstV1I	GCAGC	2 cut(s)	280, 596
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	256, 486, 551, 602
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	4 cut(s)	148, 254, 550, 601
CsiI	ACCWGGT	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	4 cut(s)	98, 182, 206, 361
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	3 cut(s)	425, 434, 595
DpnI	GATC	3 cut(s)	212, 463, 524
DpnII	GATC	3 cut(s)	210, 461, 522
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	4 cut(s)	102, 122, 293, 663
Eco81I	CCTNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	173, 279
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	4 cut(s)	101, 185, 209, 364
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	4 cut(s)	97, 181, 205, 360
FauNDI	CATATG	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	269, 610
FokI	GGATG	1 cut(s)	654
Fsp4HI	GCNGC	2 cut(s)	269, 610
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	269, 610
HaeIII	GGCC	4 cut(s)	256, 486, 551, 602
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	4 cut(s)	101, 185, 209, 364
HinfI	GANTC	2 cut(s)	429, 593
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	3 cut(s)	82, 141, 428
Hpy188III	TCNNGA	2 cut(s)	433, 459
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	4 cut(s)	52, 77, 380, 573
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4V	TGCA	3 cut(s)	97, 171, 612
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 268, 274, 557
HpyF3I	CTNAG	3 cut(s)	425, 434, 595
Hsp92II	CATG	4 cut(s)	101, 185, 209, 364
KflI	GGGWCCC	1 cut(s)	148
KpnI	GGTACC	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	210, 461, 522
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	280, 596
LweI	GCATC	2 cut(s)	112, 184
MabI	ACCWGGT	1 cut(s)	173
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	184, 420
MalI	GATC	3 cut(s)	212, 463, 524
MboI	GATC	3 cut(s)	210, 461, 522
MboII	GAAGA	4 cut(s)	40, 43, 128, 656
MflI	RGATCY	1 cut(s)	461
MluCI	AATT	2 cut(s)	340, 656
MlyI	GAGTC	1 cut(s)	587
MnlI	CCTC	6 cut(s)	24, 56, 308, 429, 497, 506
MseI	TTAA	1 cut(s)	673
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	2 cut(s)	175, 281
MvaI	CCWGG	2 cut(s)	175, 281
MwoI	GCNNNNNNNGC	4 cut(s)	98, 268, 274, 557
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	3 cut(s)	210, 461, 522
NlaIII	CATG	4 cut(s)	101, 185, 209, 364
NlaIV	GGNNCC	5 cut(s)	149, 150, 179, 255, 623
NmuCI	GTSAC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	429
PflMI	CCANNNNNTGG	2 cut(s)	263, 547
PkrI	GCNGC	2 cut(s)	270, 611
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	173, 279
PspGI	CCWGG	2 cut(s)	173, 279
PspN4I	GGNNCC	5 cut(s)	149, 150, 179, 255, 623
PspPI	GGNCC	4 cut(s)	148, 254, 550, 601
PspPPI	RGGWCCY	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SaqAI	TTAA	1 cut(s)	673
SatI	GCNGC	2 cut(s)	269, 610
Sau3AI	GATC	3 cut(s)	210, 461, 522
Sau96I	GGNCC	4 cut(s)	148, 254, 550, 601
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	2 cut(s)	175, 281
SexAI	ACCWGGT	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	112, 184
SfuI	TTCGAA	1 cut(s)	514
SinI	GGWCC	1 cut(s)	148
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	340, 656
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	173, 279
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	514
TasI	AATT	2 cut(s)	340, 656
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	673
Tru9I	TTAA	1 cut(s)	673
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	2 cut(s)	268, 609
Tsp45I	GTSAC	1 cut(s)	420
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	603
Van91I	CCANNNNNTGG	2 cut(s)	263, 547
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	340, 656
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.