Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015530

Physical Location & Seq

Genomic Coordinates Forward (+)

12712350 .. 12714466

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09520.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATATTTGACTTTGACTACTTTTGGAACCAAACCCACTACCTCTTCTTTCTCTTTGTTTTTGTTTCGTTTGCTTGCCTCTCAAAGCTCTTCCCACTTCCTCTGCTTTTTCATTTCTCTCCAATGGCTCCTCTCTCCGTACTACCTTTCTCTCTCACCTTCCTCTTCTTTCTCTCTCCTGCGCTCTCCACAAACTCCGAAGGAAATGCTTTGCATGCTCTGAGAAGCAGATTCAACGATGTCAACAACGTTCTGCAGAGCTGGGATCCAACGCTGGTCAATCCCTGCACCTGGTTCCACGTTACCTGTGACTCCAACAGCCATGTCATCCGATTGGATTTGGGCAACTCTAACATTTCTGGGAGTTTGGGGCCAGAGCTTGGGCAGCTGAAGCACCTGCAGTACTTGGAACTTTATAGAAATGACATAAGTGGTAAAATCCCAGAGGAGTTGGGGAGCTTGAAAAGCCTTGTTAGCATGGATTTGTATGACAACAGGTTTGAAGGAGAAATCCCGAAATCTTTCGCCAATTTGAAGTCACTCAGATTTCTGCGGCTTAACAACAACAAACTAACGGGATCTATCCCGAGGAAACTCGTTGGCCTCTCTGACCTCAAAGTTTTTGATGTTTCTAACAACGATCTGTGCGGAACAATTCCAGTTGATGGTCCATTTGGGGCTTTCCCAATGGAAAGTTTTGAAAACAACAGACTTAACGGCCCAGAGCTGAAAGGGCTGGTATCCTACGACTTTGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007030 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010033 GO:0010152 GO:0010154 GO:0010227 GO:0010256 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0021700 GO:0022402 GO:0022414 GO:0023052 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033612 GO:0033993 GO:0034293 GO:0036211 GO:0038023 GO:0042175 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046777 GO:0048229 GO:0048236 GO:0048316 GO:0048367 GO:0048437 GO:0048545 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0098827 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

254

Amino Acids

28.57

Weight (kDa)

5.65

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03940
malus_domestica	MD05G1096400.v1.1 MD10G1102700.v1.1
prunus_persica	Prupe.8G140900_v2.0.a1
pyrus_communis	pycom05g09520
rosa_chinensis	RchiOBHm_Chr6g0252991
rosa_laevigata	RLG00000015046
rosa_multiflora	Rmu_co8514715.1_g000001 Rmu_sc0002560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00212240
rosa_rugosa	Rorug05G0542400
rosa_samantha	Rh6AG056500 Rh6BG050900 Rh6CG048800 Rh6DG044500
rosa_wichuraiana	Rw6G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	405
AccB7I	CCANNNNNTGG	2 cut(s)	380, 665
AciI	CCGC	2 cut(s)	553, 648
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	3 cut(s)	260, 273, 586
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	141, 404
AfiI	CCNNNNNNNGG	3 cut(s)	291, 380, 665
AgsI	TTSAA	5 cut(s)	235, 463, 503, 535, 701
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	6 cut(s)	88, 261, 379, 388, 459, 727
AluI	AGCT	6 cut(s)	88, 261, 379, 388, 459, 727
AlwI	GGATC	3 cut(s)	260, 273, 586
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	3 cut(s)	371, 601, 718
ApeKI	GCWGC	1 cut(s)	385
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	3 cut(s)	371, 668, 719
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	668
BamHI	GGATCC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	659
BceAI	ACGGC	1 cut(s)	733
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	751
BfmI	CTRYAG	2 cut(s)	254, 398
BfuAI	ACCTGC	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	2 cut(s)	386, 554
BlsI	GCNGC	2 cut(s)	387, 555
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	668
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	3 cut(s)	371, 668, 719
BmiI	GGNNCC	5 cut(s)	29, 129, 267, 296, 372
BmrFI	CCNGG	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 380, 665
Bse1I	ACTGG	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	291, 380, 665
BseMII	CTCAG	2 cut(s)	212, 556
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	2 cut(s)	120, 461
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	373, 603, 720
BsiHKCI	CYCGRG	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	291, 380, 665
BsnI	GGCC	3 cut(s)	373, 603, 720
BsoBI	CYCGRG	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	265, 578, 640
BspACI	CCGC	2 cut(s)	553, 648
BspANI	GGCC	3 cut(s)	373, 603, 720
BspCNI	CTCAG	2 cut(s)	213, 555
BspLI	GGNNCC	5 cut(s)	29, 129, 267, 296, 372
BspMAI	CTGCAG	2 cut(s)	258, 402
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	260, 273, 586
BspQI	GCTCTTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	659
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	3 cut(s)	265, 578, 640
Bst2UI	CCWGG	1 cut(s)	292
Bst6I	CTCTTC	3 cut(s)	50, 95, 170
BstC8I	GCNNGC	2 cut(s)	76, 216
BstDEI	CTNAG	2 cut(s)	221, 542
BstF5I	GGATG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	268, 581, 643
BstMBI	GATC	3 cut(s)	265, 578, 640
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 385, 391, 465, 474, 733
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	2 cut(s)	254, 398
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	265, 578
BstYI	RGATCY	2 cut(s)	265, 578
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	373, 603, 720
BtsCI	GGATG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	76, 216
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	371, 668, 719
CsiI	ACCWGGT	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	140, 403
CviAII	CATG	3 cut(s)	215, 323, 478
CviQI	GTAC	2 cut(s)	140, 403
DdeI	CTNAG	2 cut(s)	221, 542
DpnI	GATC	3 cut(s)	267, 580, 642
DpnII	GATC	3 cut(s)	265, 578, 640
Eam1104I	CTCTTC	3 cut(s)	50, 95, 170
EarI	CTCTTC	3 cut(s)	50, 95, 170
Eco47I	GGWCC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	290
FaeI	CATG	3 cut(s)	218, 326, 481
FaiI	YATR	6 cut(s)	216, 324, 417, 428, 479, 489
FatI	CATG	3 cut(s)	214, 322, 477
Fnu4HI	GCNGC	2 cut(s)	386, 554
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	386, 554
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	386, 554
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	3 cut(s)	373, 603, 720
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	218, 326, 481
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	231, 311
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	5 cut(s)	199, 222, 332, 545, 610
Hpy188III	TCNNGA	2 cut(s)	514, 586
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	169, 194, 497
HpyCH4IV	ACGT	2 cut(s)	249, 300
HpyCH4V	TGCA	4 cut(s)	214, 256, 288, 400
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 385, 391, 465, 474, 733
HpyF3I	CTNAG	2 cut(s)	221, 542
HpySE526I	ACGT	2 cut(s)	249, 300
Hsp92II	CATG	3 cut(s)	218, 326, 481
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	265, 578, 640
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	133, 456
Lsp1109I	GCAGC	1 cut(s)	397
MabI	ACCWGGT	1 cut(s)	290
MaeII	ACGT	2 cut(s)	249, 300
MaeIII	GTNAC	3 cut(s)	301, 308, 537
MalI	GATC	3 cut(s)	267, 580, 642
MboI	GATC	3 cut(s)	265, 578, 640
MboII	GAAGA	3 cut(s)	37, 82, 157
MflI	RGATCY	2 cut(s)	265, 578
MluCI	AATT	2 cut(s)	529, 654
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	293, 339
MnlI	CCTC	9 cut(s)	53, 89, 111, 141, 173, 439, 582, 614, 623
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	2 cut(s)	558, 714
MspA1I	CMGCKG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	6 cut(s)	215, 385, 391, 465, 474, 733
NdeII	GATC	3 cut(s)	265, 578, 640
NlaIII	CATG	3 cut(s)	218, 326, 481
NlaIV	GGNNCC	5 cut(s)	29, 129, 267, 296, 372
NmuCI	GTSAC	2 cut(s)	308, 537
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	231
PflMI	CCANNNNNTGG	2 cut(s)	380, 665
PkrI	GCNGC	2 cut(s)	387, 555
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	5 cut(s)	29, 129, 267, 296, 372
PspPI	GGNCC	3 cut(s)	371, 668, 719
PstI	CTGCAG	2 cut(s)	258, 402
PsuI	RGATCY	2 cut(s)	265, 578
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	141, 404
RsaNI	GTAC	2 cut(s)	140, 403
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	558, 714
SatI	GCNGC	2 cut(s)	386, 554
Sau3AI	GATC	3 cut(s)	265, 578, 640
Sau96I	GGNCC	3 cut(s)	371, 668, 719
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	292
SexAI	ACCWGGT	1 cut(s)	290
SfcI	CTRYAG	2 cut(s)	254, 398
SinI	GGWCC	1 cut(s)	668
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	529, 654
SsiI	CCGC	2 cut(s)	553, 648
StyD4I	CCNGG	1 cut(s)	290
TaiI	ACGT	2 cut(s)	252, 303
TasI	AATT	2 cut(s)	529, 654
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	558, 714
Tru9I	TTAA	2 cut(s)	558, 714
TseFI	GTSAC	2 cut(s)	308, 537
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	2 cut(s)	308, 537
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	127
Van91I	CCANNNNNTGG	2 cut(s)	380, 665
VpaK11BI	GGWCC	1 cut(s)	668
XceI	RCATGY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	521
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.