Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015530

Physical Location & Seq

Genomic Coordinates Forward (+)

4836496 .. 4838867

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGTTTCAGGAAATGCTTTGCATGCTTTGAGAAGTAGGTTCAATGATGCCACCAATGTTCTTCAGAGTTGGGACCCAACTCTGGTCAATCCCTGCACCTGGTTCCATGTTACCTGTGATGCTAATAACCATGTGATCCGTTTGGATTTGGGCAACTCTAACATTTCTGGGTCTTTGGGGCCAGAGCTTGGGCAGCTGAAGCACCTGGAATACTTGGAGCTTTATAGAAATGATATAGGAGGTAAAATCCCAAAGGAGTTGGGGAATTTGAAAAACCTTGTCAGCATGGATTTGTATGGCAACAGATTTGAAGGGAAAATCCCAAAATCTTTCTCCAAGTTGAAGTCACTCAGATTTCTGAGGCTAAACAACAACAAACTATCAGGATCTATTCCAAGGGAACTCACCGGCCTCTCTAACCTCAAAGTTTTTGATGTTTCGAACAATGATCTATGCGGAACTATTCCAGTTGATGGCCCATTTAGCACCTTCTCAATGGAAAGTTTTGAGAACAACAGACTCAGTGGCCCAGAGCTGCAAGGACTGGTACCATATGACTTCGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007030 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010033 GO:0010152 GO:0010154 GO:0010227 GO:0010256 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0021700 GO:0022402 GO:0022414 GO:0023052 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033612 GO:0033993 GO:0034293 GO:0036211 GO:0038023 GO:0042175 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046777 GO:0048229 GO:0048236 GO:0048316 GO:0048367 GO:0048437 GO:0048545 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0098827 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

189

Amino Acids

20.99

Weight (kDa)

6.89

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	4 - 40	5e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	58 - 148	4.7e-13	Leucine-rich repeat region
LRR_8	PF13855	92 - 151	7e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03940
malus_domestica	MD05G1096400.v1.1 MD10G1102700.v1.1
prunus_persica	Prupe.8G140900_v2.0.a1
pyrus_communis	pycom05g09520
rosa_chinensis	RchiOBHm_Chr6g0252991
rosa_laevigata	RLG00000015046
rosa_multiflora	Rmu_co8514715.1_g000001 Rmu_sc0002560.1_g000007
rosa_roxburghii	Rroxscaffold_7G00212240
rosa_rugosa	Rorug05G0542400
rosa_samantha	Rh6AG056500 Rh6BG050900 Rh6CG048800 Rh6DG044500
rosa_wichuraiana	Rw6G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	547
AccB7I	CCANNNNNTGG	2 cut(s)	188, 473
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	2 cut(s)	130, 394
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	47, 218
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	4 cut(s)	82, 99, 188, 473
AgsI	TTSAA	4 cut(s)	43, 271, 311, 343
AjnI	CCWGG	2 cut(s)	98, 204
AluBI	AGCT	4 cut(s)	187, 196, 220, 535
AluI	AGCT	4 cut(s)	187, 196, 220, 535
AlwI	GGATC	2 cut(s)	130, 394
AoxI	GGCC	4 cut(s)	179, 409, 475, 526
ApeKI	GCWGC	2 cut(s)	193, 535
ApoI	RAATTY	1 cut(s)	265
Asp718I	GGTACC	1 cut(s)	547
AspS9I	GGNCC	4 cut(s)	73, 179, 476, 527
AsuHPI	GGTGA	1 cut(s)	397
AsuII	TTCGAA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	547
BbvI	GCAGC	2 cut(s)	205, 522
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	100, 206
BisI	GCNGC	2 cut(s)	194, 536
BlsI	GCNGC	2 cut(s)	195, 537
Bme1390I	CCNGG	2 cut(s)	100, 206
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	73, 179, 476, 527
BmiI	GGNNCC	5 cut(s)	74, 75, 104, 180, 549
BmrFI	CCNGG	2 cut(s)	100, 206
BmsI	GCATC	2 cut(s)	37, 109
Bpu14I	TTCGAA	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 99, 188, 473
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	467, 549
BseBI	CCWGG	2 cut(s)	100, 206
BseDI	CCNNGG	1 cut(s)	395
BseLI	CCNNNNNNNGG	4 cut(s)	82, 99, 188, 473
BseMII	CTCAG	3 cut(s)	350, 364, 535
BseNI	ACTGG	2 cut(s)	467, 549
BseXI	GCAGC	2 cut(s)	205, 522
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	181, 411, 477, 528
BshNI	GGYRCC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	4 cut(s)	82, 99, 188, 473
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	181, 411, 477, 528
Bsp119I	TTCGAA	1 cut(s)	440
Bsp143I	GATC	3 cut(s)	135, 386, 448
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	4 cut(s)	181, 411, 477, 528
BspCNI	CTCAG	3 cut(s)	351, 363, 534
BspLI	GGNNCC	5 cut(s)	74, 75, 104, 180, 549
BspPI	GGATC	2 cut(s)	130, 394
BspT104I	TTCGAA	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	467, 549
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	3 cut(s)	135, 386, 448
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	100, 206
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	350, 359, 521
BstKTI	GATC	3 cut(s)	138, 389, 451
BstMBI	GATC	3 cut(s)	135, 386, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 193, 199, 483
BstNI	CCWGG	2 cut(s)	100, 206
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	98, 204
BstV1I	GCAGC	2 cut(s)	205, 522
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	4 cut(s)	181, 411, 477, 528
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	4 cut(s)	73, 179, 476, 527
CsiI	ACCWGGT	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	4 cut(s)	23, 107, 131, 286
CviJI	RGCY	9 cut(s)	181, 187, 196, 220, 364, 411, 477, 528, 535
CviKI_1	RGCY	9 cut(s)	181, 187, 196, 220, 364, 411, 477, 528, 535
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	3 cut(s)	350, 359, 521
DpnI	GATC	3 cut(s)	137, 388, 450
DpnII	GATC	3 cut(s)	135, 386, 448
Eco130I	CCWWGG	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	47, 218
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	98, 204
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	4 cut(s)	26, 110, 134, 289
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	22, 106, 130, 285
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	194, 536
Fsp4HI	GCNGC	2 cut(s)	194, 536
GluI	GCNGC	2 cut(s)	194, 536
HaeIII	GGCC	4 cut(s)	181, 411, 477, 528
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	4 cut(s)	26, 110, 134, 289
HinfI	GANTC	1 cut(s)	519
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	66, 353, 360
Hpy188III	TCNNGA	2 cut(s)	9, 384
HpyAV	CCTTC	2 cut(s)	305, 499
HpyCH4V	TGCA	3 cut(s)	22, 96, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 193, 199, 483
HpyF3I	CTNAG	3 cut(s)	350, 359, 521
Hsp92II	CATG	4 cut(s)	26, 110, 134, 289
KflI	GGGWCCC	1 cut(s)	73
KpnI	GGTACC	1 cut(s)	551
Kzo9I	GATC	3 cut(s)	135, 386, 448
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	205, 522
LweI	GCATC	2 cut(s)	37, 109
MabI	ACCWGGT	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	109, 345
MalI	GATC	3 cut(s)	137, 388, 450
MboI	GATC	3 cut(s)	135, 386, 448
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	513
MnlI	CCTC	4 cut(s)	233, 354, 422, 431
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	100, 206
MvaI	CCWGG	2 cut(s)	100, 206
MwoI	GCNNNNNNNGC	4 cut(s)	23, 193, 199, 483
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	3 cut(s)	135, 386, 448
NlaIII	CATG	4 cut(s)	26, 110, 134, 289
NlaIV	GGNNCC	5 cut(s)	74, 75, 104, 180, 549
NmuCI	GTSAC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	26
PflMI	CCANNNNNTGG	2 cut(s)	188, 473
PkrI	GCNGC	2 cut(s)	195, 537
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	98, 204
PspGI	CCWGG	2 cut(s)	98, 204
PspN4I	GGNNCC	5 cut(s)	74, 75, 104, 180, 549
PspPI	GGNCC	4 cut(s)	73, 179, 476, 527
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
SatI	GCNGC	2 cut(s)	194, 536
Sau3AI	GATC	3 cut(s)	135, 386, 448
Sau96I	GGNCC	4 cut(s)	73, 179, 476, 527
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	2 cut(s)	100, 206
SexAI	ACCWGGT	1 cut(s)	98
SfaNI	GCATC	2 cut(s)	37, 109
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	1 cut(s)	73
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	98, 204
StyI	CCWWGG	1 cut(s)	395
TaqI	TCGA	1 cut(s)	440
TasI	AATT	1 cut(s)	265
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	2 cut(s)	193, 535
Tsp45I	GTSAC	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	2 cut(s)	188, 473
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.