MD10G1111700.v1.1

endoplasmic reticulum organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0019736
Physical Location & Seq
Reverse (-)
18315261 .. 18316929
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1111700.v1.1.491

Sequence Viewer

Length: 279 bp
ATGCTTTCCAGCTCCAGTTTCACTAAAGAAGGTGTTGAAGGCATCATCACCTCCACCGACGGACTTGTCACTAGGCATTTGGCCATCAGGCTGGATGCCATGCTCAAGGCAGTAAAGCTCCCAGCAGGCATTGCCGACCTGGATACCAGCCTGGCCGATGTGGATCGAAATGCACTCCCTCATCTTTGCCGATCGAAACCGCGATACGAAACCGAAGAACGAGAGGCTGTAACAAACAAGAAGAAGAGCCGAAAGCGTTTATTAAGACGCCCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.26

Weight (kDa)

9.91

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019736)

Species Orthologous Gene IDs
malus_domestica MD10G1111700.v1.1
rosa_laevigata RLG00000017705 RLG00000028352
rosa_multiflora Rmu_sc0000756.1_g000018 Rmu_sc0008633.1_g000001
rosa_rugosa Rorug04G0248800 Rorug06G0068900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccII CGCG 1 cut(s) 202
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 81, 153
AcyI GRCGYC 1 cut(s) 268
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 2 cut(s) 138, 150
AluBI AGCT 2 cut(s) 12, 118
AluI AGCT 2 cut(s) 12, 118
AlwI GGATC 1 cut(s) 171
AoxI GGCC 2 cut(s) 81, 153
AsuHPI GGTGA 1 cut(s) 40
BalI TGGCCA 1 cut(s) 83
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 2 cut(s) 140, 152
BciVI GTATCC 1 cut(s) 136
BfaI CTAG 1 cut(s) 72
BfuI GTATCC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 140, 152
BmrFI CCNGG 2 cut(s) 140, 152
BmsI GCATC 2 cut(s) 51, 85
BpuEI CTTGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 2 cut(s) 140, 152
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 162
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 202
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 2 cut(s) 83, 155
BsiEI CGRYCG 1 cut(s) 194
BsnI GGCC 2 cut(s) 83, 155
Bsp143I GATC 2 cut(s) 163, 191
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 83, 155
BspFNI CGCG 1 cut(s) 202
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 15
BssMI GATC 2 cut(s) 163, 191
BssNI GRCGYC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 140, 152
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 268
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 127
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 202
BstKTI GATC 2 cut(s) 166, 194
BstMBI GATC 2 cut(s) 163, 191
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 140, 152
BstSCI CCNGG 2 cut(s) 138, 150
BstUI CGCG 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 91
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 83, 155
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 127
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 12, 83, 91, 118, 150, 155, 227, 249
CviKI_1 RGCY 8 cut(s) 12, 83, 91, 118, 150, 155, 227, 249
DpnI GATC 2 cut(s) 165, 193
DpnII GATC 2 cut(s) 163, 191
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 2 cut(s) 81, 153
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 138, 150
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FatI CATG 1 cut(s) 99
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 83, 155
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 1 cut(s) 103
HphI GGTGA 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 23, 32
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 163, 191
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 2 cut(s) 17, 123
LweI GCATC 2 cut(s) 51, 85
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 67, 229
MalI GATC 2 cut(s) 165, 193
MboI GATC 2 cut(s) 163, 191
MboII GAAGA 3 cut(s) 227, 253, 256
MlsI TGGCCA 1 cut(s) 83
MluNI TGGCCA 1 cut(s) 83
MnlI CCTC 3 cut(s) 61, 189, 217
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 140, 152
MvaI CCWGG 2 cut(s) 140, 152
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 163, 191
NlaIII CATG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 239
Ple19I CGATCG 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 138, 150
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 2 cut(s) 138, 150
PvuI CGATCG 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 263
Sau3AI GATC 2 cut(s) 163, 191
ScrFI CCNGG 2 cut(s) 140, 152
SetI ASST 5 cut(s) 14, 34, 53, 120, 141
SfaNI GCATC 2 cut(s) 51, 85
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 138, 150
TaqI TCGA 2 cut(s) 166, 194
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 75
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.