Rmu_sc0008633.1_g000001

Protein FLC EXPRESSOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008633.1
OG0019736
Physical Location & Seq
Forward (+)
1595 .. 5379
3785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008633.1_g000001.1.cds

Sequence Viewer

Length: 630 bp
atgagaaggcttgaagatgaagcaacgaggcccaagaactctttggattctcggcaaattggatcaaggcccatcaaagcccatgacattagggacctaaccaccgctcagagtgacctccacaacctgaaggttgtcgccggccaaatcaaatccgagaggaacgccaaagtccacgaggtctacgacaggtcgttgaagctggacgacgagctctgcgacgtagacgccatgaaagccaagttgactctggtccggaacgacatcgaggacttgagcaagtcgcggatggagctcgtgaccaaaattttgaaattcctgagatcgacgatctttgtcgatggtgtagtggctgcgagtgaagatgttggaagcgtcctccttgccggagatgagctggttgggctagaagagctggcagtaggttctggtgcggacctcgtcgatgacggtggggtcgaggtggacgaagatggggcgtgggacgtgcttgcaggcgccggtcttggagaagaaggtgttgaaggcaccgaaagtttgagaaattgtaggtgtttgagaataacttttgtatgcgttgcagcattttgtggagtagaggttgttcaaaggaggatggcgatggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.76

Weight (kDa)

4.77

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019736)

Species Orthologous Gene IDs
malus_domestica MD10G1111700.v1.1
rosa_laevigata RLG00000017705 RLG00000028352
rosa_multiflora Rmu_sc0000756.1_g000018 Rmu_sc0008633.1_g000001
rosa_rugosa Rorug04G0248800 Rorug06G0068900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 497, 527
AccBSI CCGCTC 1 cut(s) 107
AccI GTMKAC 2 cut(s) 183, 225
AccII CGCG 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 255
AciI CCGC 3 cut(s) 105, 286, 434
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 2 cut(s) 306, 314
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 2 cut(s) 228, 498
AgsI TTSAA 5 cut(s) 14, 199, 313, 524, 608
AjiI CACGTC 1 cut(s) 487
AluBI AGCT 5 cut(s) 202, 214, 295, 397, 415
AluI AGCT 5 cut(s) 202, 214, 295, 397, 415
Alw21I GWGCWC 2 cut(s) 216, 297
AlwI GGATC 1 cut(s) 70
Aor13HI TCCGGA 1 cut(s) 255
AoxI GGCC 3 cut(s) 29, 68, 142
ApeKI GCWGC 2 cut(s) 353, 581
ApoI RAATTY 2 cut(s) 306, 314
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 5 cut(s) 30, 69, 94, 253, 436
AvaII GGWCC 3 cut(s) 94, 253, 436
BanI GGYRCC 2 cut(s) 497, 527
BanII GRGCYC 2 cut(s) 216, 297
BauI CACGAG 2 cut(s) 176, 296
Bbv12I GWGCWC 2 cut(s) 216, 297
BbvI GCAGC 2 cut(s) 340, 593
BccI CCATC 6 cut(s) 80, 283, 335, 467, 610, 616
BfaI CTAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 501
BisI GCNGC 2 cut(s) 354, 582
BlsI GCNGC 2 cut(s) 355, 583
Bme18I GGWCC 3 cut(s) 94, 253, 436
BmgBI CACGTC 1 cut(s) 487
BmgT120I GGNCC 5 cut(s) 30, 69, 94, 253, 436
BmiI GGNNCC 3 cut(s) 95, 499, 529
BoxI GACNNNNGTC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 295
BsaHI GRCGYC 2 cut(s) 228, 498
BsaWI WCCGGW 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bse118I RCCGGY 2 cut(s) 140, 500
BseAI TCCGGA 1 cut(s) 255
BseGI GGATG 2 cut(s) 294, 621
BseMII CTCAG 2 cut(s) 122, 311
BseXI GCAGC 2 cut(s) 340, 593
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 3 cut(s) 31, 70, 144
BshNI GGYRCC 2 cut(s) 497, 527
BsiHKAI GWGCWC 2 cut(s) 216, 297
BsiSI CCGG 4 cut(s) 141, 256, 387, 501
BslFI GGGAC 2 cut(s) 107, 497
BsmFI GGGAC 2 cut(s) 107, 497
BsnI GGCC 3 cut(s) 31, 70, 144
Bsp1286I GDGCHC 2 cut(s) 216, 297
Bsp13I TCCGGA 1 cut(s) 255
Bsp143I GATC 3 cut(s) 62, 323, 330
BspACI CCGC 3 cut(s) 105, 286, 434
BspANI GGCC 3 cut(s) 31, 70, 144
BspCNI CTCAG 2 cut(s) 121, 312
BspEI TCCGGA 1 cut(s) 255
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 95, 499, 529
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 405
BspT107I GGYRCC 2 cut(s) 497, 527
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 140, 500
BssAI RCCGGY 2 cut(s) 140, 500
BssMI GATC 3 cut(s) 62, 323, 330
BssNI GRCGYC 2 cut(s) 228, 498
BssSI CACGAG 2 cut(s) 176, 296
Bst2BI CACGAG 2 cut(s) 176, 296
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 2 cut(s) 228, 498
BstC8I GCNNGC 4 cut(s) 142, 417, 492, 496
BstDEI CTNAG 2 cut(s) 108, 320
BstF5I GGATG 2 cut(s) 294, 621
BstFNI CGCG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 3 cut(s) 65, 326, 333
BstMBI GATC 3 cut(s) 62, 323, 330
BstMWI GCNNNNNNNGC 4 cut(s) 236, 292, 403, 412
BstPAI GACNNNNGTC 1 cut(s) 251
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 340, 593
BsuRI GGCC 3 cut(s) 31, 70, 144
BtrI CACGTC 1 cut(s) 487
BtsCI GGATG 2 cut(s) 294, 621
Cac8I GCNNGC 4 cut(s) 142, 417, 492, 496
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 2 cut(s) 140, 500
Cfr13I GGNCC 5 cut(s) 30, 69, 94, 253, 436
CseI GACGC 2 cut(s) 236, 364
CviAII CATG 2 cut(s) 83, 232
DdeI CTNAG 2 cut(s) 108, 320
DinI GGCGCC 1 cut(s) 499
DpnI GATC 3 cut(s) 64, 325, 332
DpnII GATC 3 cut(s) 62, 323, 330
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 2 cut(s) 214, 295
Eco24I GRGCYC 2 cut(s) 216, 297
Eco47I GGWCC 3 cut(s) 94, 253, 436
Eco53kI GAGCTC 2 cut(s) 214, 295
Eco57I CTGAAG 1 cut(s) 149
EcoICRI GAGCTC 2 cut(s) 214, 295
EcoO109I RGGNCCY 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 216, 297
EgeI GGCGCC 1 cut(s) 499
EheI GGCGCC 1 cut(s) 499
FaeI CATG 2 cut(s) 86, 235
FaiI YATR 3 cut(s) 84, 233, 574
FaqI GGGAC 2 cut(s) 107, 497
FatI CATG 2 cut(s) 82, 231
FblI GTMKAC 2 cut(s) 183, 225
Fnu4HI GCNGC 2 cut(s) 354, 582
FokI GGATG 1 cut(s) 301
FriOI GRGCYC 2 cut(s) 216, 297
Fsp4HI GCNGC 2 cut(s) 354, 582
FspBI CTAG 1 cut(s) 407
GlaI GCGC 1 cut(s) 499
GluI GCNGC 2 cut(s) 354, 582
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 3 cut(s) 31, 70, 144
HapII CCGG 4 cut(s) 141, 256, 387, 501
HgaI GACGC 2 cut(s) 236, 364
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 2 cut(s) 228, 498
Hin1II CATG 2 cut(s) 86, 235
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 2 cut(s) 47, 247
HpaII CCGG 4 cut(s) 141, 256, 387, 501
Hpy166II GTNNAC 5 cut(s) 175, 184, 226, 246, 466
Hpy188I TCNGA 2 cut(s) 111, 157
Hpy188III TCNNGA 3 cut(s) 256, 298, 319
Hpy8I GTNNAC 5 cut(s) 175, 184, 226, 246, 466
Hpy99I CGWCG 4 cut(s) 212, 224, 331, 446
HpyAV CCTTC 3 cut(s) 124, 509, 518
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 2 cut(s) 222, 486
HpyCH4V TGCA 2 cut(s) 494, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 292, 403, 412
HpyF3I CTNAG 2 cut(s) 108, 320
HpySE526I ACGT 2 cut(s) 222, 486
Hsp92I GRCGYC 2 cut(s) 228, 498
Hsp92II CATG 2 cut(s) 86, 235
HspAI GCGC 1 cut(s) 498
KasI GGCGCC 1 cut(s) 497
Kpn2I TCCGGA 1 cut(s) 255
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 62, 323, 330
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 340, 593
MaeI CTAG 1 cut(s) 407
MaeII ACGT 2 cut(s) 222, 486
MaeIII GTNAC 2 cut(s) 113, 298
MalI GATC 3 cut(s) 64, 325, 332
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 62, 323, 330
MboII GAAGA 5 cut(s) 26, 374, 422, 482, 524
MhlI GDGCHC 2 cut(s) 216, 297
MluCI AATT 4 cut(s) 57, 306, 314, 544
Mly113I GGCGCC 1 cut(s) 498
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 349
MroI TCCGGA 1 cut(s) 255
MroNI GCCGGC 1 cut(s) 140
MspI CCGG 4 cut(s) 141, 256, 387, 501
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 4 cut(s) 236, 292, 403, 412
NaeI GCCGGC 1 cut(s) 142
NarI GGCGCC 1 cut(s) 498
NdeII GATC 3 cut(s) 62, 323, 330
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 86, 235
NlaIV GGNNCC 3 cut(s) 95, 499, 529
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 113, 298
PciSI GCTCTTC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 4 cut(s) 183, 216, 456, 465
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 440
PkrI GCNGC 2 cut(s) 355, 583
PleI GAGTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 251
Psp124BI GAGCTC 2 cut(s) 216, 297
Psp5II RGGWCCY 1 cut(s) 94
PspN4I GGNNCC 3 cut(s) 95, 499, 529
PspPI GGNCC 5 cut(s) 30, 69, 94, 253, 436
PspPPI RGGWCCY 1 cut(s) 94
PsrI GAACNNNNNNTAC 2 cut(s) 588, 620
PsyI GACNNNGTC 1 cut(s) 440
SacI GAGCTC 2 cut(s) 216, 297
SapI GCTCTTC 1 cut(s) 405
SatI GCNGC 2 cut(s) 354, 582
Sau3AI GATC 3 cut(s) 62, 323, 330
Sau96I GGNCC 5 cut(s) 30, 69, 94, 253, 436
SchI GAGTC 1 cut(s) 241
SduI GDGCHC 2 cut(s) 216, 297
SfoI GGCGCC 1 cut(s) 499
SinI GGWCC 3 cut(s) 94, 253, 436
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 4 cut(s) 57, 306, 314, 544
SsiI CCGC 3 cut(s) 105, 286, 434
SspDI GGCGCC 1 cut(s) 497
SspMI CTAG 1 cut(s) 407
SstI GAGCTC 2 cut(s) 216, 297
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 2 cut(s) 225, 489
TaqI TCGA 5 cut(s) 267, 326, 339, 444, 459
TasI AATT 4 cut(s) 57, 306, 314, 544
TfiI GAWTC 1 cut(s) 47
TseFI GTSAC 2 cut(s) 113, 298
TseI GCWGC 2 cut(s) 353, 581
Tsp45I GTSAC 2 cut(s) 113, 298
TspDTI ATGAA 2 cut(s) 33, 248
Tth111I GACNNNGTC 1 cut(s) 440
VpaK11BI GGWCC 3 cut(s) 94, 253, 436
XapI RAATTY 2 cut(s) 306, 314
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 247
XmiI GTMKAC 2 cut(s) 183, 225
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.