Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0019736

Physical Location & Seq

Genomic Coordinates Forward (+)

41997359 .. 41998279

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0248800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTGACTGTTGCCAATCCGGAGGAAGAAACTGTCTATTTCATGGATCCATTGCGGCGTCGACTAGTTGGTGGAGAATGGCAAACTGTTGTAGAAAATGGGATCAAAATTTACAATGCTCAAAGAAATAGGTCTGGCCGGAAATCAATAGTGTGGCAAAACATGGGGGGTATTCCGGCACAACAAAATGTGAAGGACTGTGGCATATTCATCATGCGGTACATGAAGGAAATAATTGAGGATAAGAACCTGGGTTTTGCTTCAAAGTGGCAGCGACGATCCGAATTGTTCTACACCCAAAAGGATGTTGATGTTGTGAGGTCAGAGTGGGCTAAGTTTGTGATGAAGTATCATATTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006897 GO:0006907 GO:0006914 GO:0006950 GO:0006970 GO:0006971 GO:0006996 GO:0007029 GO:0007030 GO:0007033 GO:0007154 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0009056 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010256 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016236 GO:0022607 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032502 GO:0032940 GO:0033298 GO:0033554 GO:0042175 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044764 GO:0046903 GO:0048102 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051703 GO:0051704 GO:0051716 GO:0061919 GO:0070925 GO:0071496 GO:0071840 GO:0090702 GO:0098630 GO:0098657 GO:0098743 GO:0098827 GO:0099120 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SAP SNARE_assoc

Protein Analysis

120

Amino Acids

14.18

Weight (kDa)

9.48

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	10 - 112	1.4e-06	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019736)

Species	Orthologous Gene IDs
malus_domestica	MD10G1111700.v1.1
rosa_laevigata	RLG00000017705 RLG00000028352
rosa_multiflora	Rmu_sc0000756.1_g000018 Rmu_sc0008633.1_g000001
rosa_rugosa	Rorug04G0248800 Rorug06G0068900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	61
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	55, 217
AclWI	GGATC	4 cut(s)	41, 54, 110, 273
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	264
AhlI	ACTAGT	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	249
AlwI	GGATC	4 cut(s)	41, 54, 110, 273
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	56, 272
BlsI	GCNGC	2 cut(s)	57, 273
Bme1390I	CCNGG	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	20, 139, 176
BsnI	GGCC	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	46, 102, 278
BspACI	CCGC	2 cut(s)	55, 217
BspANI	GGCC	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	4 cut(s)	41, 54, 110, 273
BsrDI	GCAATG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	3 cut(s)	46, 102, 278
BssNI	GRCGYC	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	4 cut(s)	10, 34, 88, 200
BstACI	GRCGYC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	49, 105, 281
BstMBI	GATC	3 cut(s)	46, 102, 278
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	310
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	43, 163, 214, 223
CviJI	RGCY	2 cut(s)	138, 332
CviKI_1	RGCY	2 cut(s)	138, 332
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	3 cut(s)	48, 104, 280
DpnII	GATC	3 cut(s)	46, 102, 278
EaeI	YGGCCR	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	46, 166, 217, 226
FaiI	YATR	7 cut(s)	44, 164, 206, 215, 224, 354, 361
FatI	CATG	4 cut(s)	42, 162, 213, 222
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	56, 272
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	56, 272
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	56, 272
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	3 cut(s)	20, 139, 176
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	46, 166, 217, 226
HincII	GTYRAC	2 cut(s)	6, 62
HindII	GTYRAC	2 cut(s)	6, 62
HpaII	CCGG	3 cut(s)	20, 139, 176
Hpy166II	GTNNAC	2 cut(s)	6, 62
Hpy188I	TCNGA	2 cut(s)	283, 325
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	6, 62
Hpy99I	CGWCG	2 cut(s)	63, 279
HpyAV	CCTTC	2 cut(s)	187, 220
HpyCH4III	ACNGT	4 cut(s)	10, 34, 88, 200
HpyCH4V	TGCA	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	46, 166, 217, 226
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	46, 102, 278
LpnPI	CCDG	6 cut(s)	33, 120, 152, 189, 236, 263
Lsp1109I	GCAGC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	65
MalI	GATC	3 cut(s)	48, 104, 280
MboI	GATC	3 cut(s)	46, 102, 278
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	3 cut(s)	108, 234, 284
MnlI	CCTC	3 cut(s)	16, 232, 312
MroI	TCCGGA	1 cut(s)	19
MspI	CCGG	3 cut(s)	20, 139, 176
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
NdeII	GATC	3 cut(s)	46, 102, 278
NlaIII	CATG	4 cut(s)	46, 166, 217, 226
NlaIV	GGNNCC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	57, 273
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SalI	GTCGAC	1 cut(s)	60
SatI	GCNGC	2 cut(s)	56, 272
Sau3AI	GATC	3 cut(s)	46, 102, 278
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	3 cut(s)	134, 252, 323
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	3 cut(s)	108, 234, 284
SsiI	CCGC	2 cut(s)	55, 217
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	4 cut(s)	10, 34, 88, 200
TaqI	TCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	108, 234, 284
TauI	GCSGC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	4 cut(s)	31, 199, 239, 359
XapI	RAATTY	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.