Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0019736

Physical Location & Seq

Genomic Coordinates Forward (+)

21684848 .. 21687283

Gene Structure 2436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGTGCAGAACACACTGTTATAGGGCTCCAAAACAGACATAGAAACCTGAGAAGAAGGATACACAATGAATCCGAGCTTGGACTTTTTCCCATAGTCCACAGAAAACCTCTCCAGCAGAAGCGACTAGAGACCCGACCTGGTATCGCCACCGACGGCATTGAAGACCAGGGATCCCTGGAGCCTGGTGCAATTATCAGCGAGCTTCAGGATTTGATCCAGGCAGAGATCAACGATCTCTTTGCTGATGGTGTAGTGACCACGGGTGAAGTTGTTGGCGGCGTCCTCCTCGCCGGAGATGAGTTGCTAGGCTTTGAAGAGCTGGCGGTAGGTTCCGGTGCGGACCTCGTTGATGACGGTGGGCTCGAGGTCAACGAATATGGCGCTTGGGACTTGCTTACCAATGCTGGTCTAGAAGAAAAAGGTGTTGAAGACGTCGTCGCCGCAGCCGATGGTCTTGTTGCTCAACATCTAGCGATGGCTGCACGTGTTCAACCATCCAAACCTAATCCTTCTTTCCACCATGCAAAAACGGAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006897 GO:0006907 GO:0006914 GO:0006950 GO:0006970 GO:0006971 GO:0006996 GO:0007029 GO:0007030 GO:0007033 GO:0007154 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0009056 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010256 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016236 GO:0022607 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032502 GO:0032940 GO:0033298 GO:0033554 GO:0042175 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044764 GO:0046903 GO:0048102 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051703 GO:0051704 GO:0051716 GO:0061919 GO:0070925 GO:0071496 GO:0071840 GO:0090702 GO:0098630 GO:0098657 GO:0098743 GO:0098827 GO:0099120 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SAP SNARE_assoc

Protein Analysis

181

Amino Acids

19.24

Weight (kDa)

4.66

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019736)

Species	Orthologous Gene IDs
malus_domestica	MD10G1111700.v1.1
rosa_laevigata	RLG00000017705 RLG00000028352
rosa_multiflora	Rmu_sc0000756.1_g000018 Rmu_sc0008633.1_g000001
rosa_rugosa	Rorug04G0248800 Rorug06G0068900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
AciI	CCGC	4 cut(s)	279, 326, 341, 444
AclWI	GGATC	3 cut(s)	168, 181, 211
AcuI	CTGAAG	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	488
AcyI	GRCGYC	2 cut(s)	282, 435
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	164, 317, 431, 494
AjnI	CCWGG	5 cut(s)	139, 168, 177, 184, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	3 cut(s)	79, 205, 322
AluI	AGCT	3 cut(s)	79, 205, 322
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	3 cut(s)	168, 181, 211
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	2 cut(s)	446, 482
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	173
BanII	GRGCYC	2 cut(s)	30, 366
BbrPI	CACGTG	1 cut(s)	488
BbsI	GAAGAC	2 cut(s)	171, 438
BbvI	GCAGC	2 cut(s)	458, 469
BccI	CCATC	4 cut(s)	242, 446, 472, 505
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	5 cut(s)	141, 170, 179, 186, 221
BciVI	GTATCC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	4 cut(s)	128, 308, 413, 473
BfoI	RGCGCY	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	4 cut(s)	280, 444, 447, 483
BlsI	GCNGC	4 cut(s)	281, 445, 448, 484
Bme1390I	CCNGG	5 cut(s)	141, 170, 179, 186, 221
Bme18I	GGWCC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	4 cut(s)	29, 175, 183, 334
BmrFI	CCNGG	5 cut(s)	141, 170, 179, 186, 221
BpiI	GAAGAC	2 cut(s)	171, 438
BpmI	CTGGAG	2 cut(s)	98, 200
BsaAI	YACGTR	1 cut(s)	488
BsaHI	GRCGYC	2 cut(s)	282, 435
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	169, 177, 261
BsaWI	WCCGGW	1 cut(s)	335
BseBI	CCWGG	5 cut(s)	141, 170, 179, 186, 221
BseDI	CCNNGG	3 cut(s)	169, 177, 261
BseGI	GGATG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	458, 469
BsgI	GTGCAG	2 cut(s)	27, 468
BshFI	GGCC	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	294, 336
BslFI	GGGAC	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	30, 366
Bsp143I	GATC	4 cut(s)	173, 216, 228, 235
BspACI	CCGC	4 cut(s)	279, 326, 341, 444
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	29, 175, 183, 334
BspPI	GGATC	3 cut(s)	168, 181, 211
BspQI	GCTCTTC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	169, 177, 261
BssMI	GATC	4 cut(s)	173, 216, 228, 235
BssNI	GRCGYC	2 cut(s)	282, 435
Bst2UI	CCWGG	5 cut(s)	141, 170, 179, 186, 221
Bst4CI	ACNGT	2 cut(s)	19, 359
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	2 cut(s)	282, 435
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	203, 324
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	4 cut(s)	176, 219, 231, 238
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	4 cut(s)	173, 216, 228, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	5 cut(s)	141, 170, 179, 186, 221
BstSCI	CCNGG	5 cut(s)	139, 168, 177, 184, 219
BstV1I	GCAGC	2 cut(s)	458, 469
BstV2I	GAAGAC	2 cut(s)	171, 438
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	203, 324
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	271
CsiI	ACCWGGT	1 cut(s)	139
CviAII	CATG	1 cut(s)	524
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	4 cut(s)	175, 218, 230, 237
DpnII	GATC	4 cut(s)	173, 216, 228, 235
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	539
Eco24I	GRGCYC	2 cut(s)	30, 366
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	365
EcoRII	CCWGG	5 cut(s)	139, 168, 177, 184, 219
EcoT38I	GRGCYC	2 cut(s)	30, 366
FaeI	CATG	1 cut(s)	527
FaiI	YATR	5 cut(s)	23, 42, 95, 381, 525
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	1 cut(s)	523
Fnu4HI	GCNGC	4 cut(s)	280, 444, 447, 483
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	2 cut(s)	30, 366
Fsp4HI	GCNGC	4 cut(s)	280, 444, 447, 483
FspBI	CTAG	4 cut(s)	128, 308, 413, 473
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	4 cut(s)	280, 444, 447, 483
GsuI	CTGGAG	2 cut(s)	98, 200
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	2 cut(s)	294, 336
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	386
Hin1I	GRCGYC	2 cut(s)	282, 435
Hin1II	CATG	1 cut(s)	527
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	294, 336
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	100, 373
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	209, 413
Hpy8I	GTNNAC	2 cut(s)	100, 373
Hpy99I	CGWCG	3 cut(s)	158, 440, 443
HpyAV	CCTTC	2 cut(s)	51, 522
HpyCH4III	ACNGT	2 cut(s)	19, 359
HpyCH4IV	ACGT	2 cut(s)	435, 487
HpyCH4V	TGCA	4 cut(s)	8, 191, 485, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	435, 487
Hsp92I	GRCGYC	2 cut(s)	282, 435
Hsp92II	CATG	1 cut(s)	527
HspAI	GCGC	1 cut(s)	384
Kzo9I	GATC	4 cut(s)	173, 216, 228, 235
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	33, 181
Lsp1109I	GCAGC	2 cut(s)	458, 469
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	4 cut(s)	128, 308, 413, 473
MaeII	ACGT	2 cut(s)	435, 487
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	4 cut(s)	175, 218, 230, 237
MboI	GATC	4 cut(s)	173, 216, 228, 235
MboII	GAAGA	5 cut(s)	66, 176, 329, 428, 443
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	30, 366
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	6 cut(s)	120, 296, 299, 356, 361, 529
MspI	CCGG	2 cut(s)	294, 336
MspR9I	CCNGG	5 cut(s)	141, 170, 179, 186, 221
MvaI	CCWGG	5 cut(s)	141, 170, 179, 186, 221
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	4 cut(s)	173, 216, 228, 235
NlaIII	CATG	1 cut(s)	527
NlaIV	GGNNCC	4 cut(s)	29, 175, 183, 334
NmuCI	GTSAC	1 cut(s)	256
PaeR7I	CTCGAG	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	3 cut(s)	363, 372, 447
PfeI	GAWTC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	4 cut(s)	281, 445, 448, 484
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	488
Psp6I	CCWGG	5 cut(s)	139, 168, 177, 184, 219
PspCI	CACGTG	1 cut(s)	488
PspGI	CCWGG	5 cut(s)	139, 168, 177, 184, 219
PspN4I	GGNNCC	4 cut(s)	29, 175, 183, 334
PspPI	GGNCC	1 cut(s)	343
PspXI	VCTCGAGB	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	312
SatI	GCNGC	4 cut(s)	280, 444, 447, 483
Sau3AI	GATC	4 cut(s)	173, 216, 228, 235
Sau96I	GGNCC	1 cut(s)	343
ScrFI	CCNGG	5 cut(s)	141, 170, 179, 186, 221
SduI	GDGCHC	2 cut(s)	30, 366
SexAI	ACCWGGT	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	343
SlaI	CTCGAG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	539
SsiI	CCGC	4 cut(s)	279, 326, 341, 444
SspMI	CTAG	4 cut(s)	128, 308, 413, 473
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	5 cut(s)	139, 168, 177, 184, 219
TaaI	ACNGT	2 cut(s)	19, 359
TaiI	ACGT	2 cut(s)	438, 490
TaqI	TCGA	1 cut(s)	366
TasI	AATT	1 cut(s)	192
TauI	GCSGC	2 cut(s)	282, 446
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	446, 482
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	343
XbaI	TCTAGA	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	365
XspI	CTAG	4 cut(s)	128, 308, 413, 473
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.