Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019736

Physical Location & Seq

Genomic Coordinates Reverse (-)

20232134 .. 20234649

Gene Structure 2516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017705

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGACTGGATCTGGAGTGGGGGAGAATCTTGGTCCCCAATTGATCTGATTGTTGAAGTCCTGGAGGTTATTGAGTGTTGGAGGTCGTTGAAGCCAGGGATTCAGAGAATGAATAGAGAGCACACTGTTATAGGACTCTACAACAGATGTAGAAACCTGAGGAGAAGGATACACAGTGAATCCGAGCTTGGACTTTTTCCCATAGTCCACAGAAAGCCTCTCCAGCAGAAGCGACTCGAGACCCGACCCGGTATCGCCACCGACGGCATTGAAGACCAGGGATCCCTGGAGCCCGGTGCAGTTATCAGCGAGCTTCCGAATCTGATCCAGGCAGAGATGGACGATCTCTTTGACGATGGTGTAGTGACCACAGGCGAAGTTGTTGGCAGCGTCCTCCTTGCCGGAGATGAGCTGCTCGAGCTGGAAGAGCTTGCGGTAGGTTTCGGTGCTGACCTCATCGATAACGGTGGGCTCGAGGTCGACGAAGATGGGGCGTGGGTCGTGCTTGCCGGCGCCGGTCTTGGAGAAGAGGTGTTGAAGGCGTCGTCGCCGCGATCGATGGTCTTGTCGCTTGGCATCTGGTCGTTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006887 GO:0006897 GO:0006907 GO:0006914 GO:0006950 GO:0006970 GO:0006971 GO:0006996 GO:0007029 GO:0007030 GO:0007033 GO:0007154 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0009056 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010256 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016236 GO:0022607 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032502 GO:0032940 GO:0033298 GO:0033554 GO:0042175 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044764 GO:0046903 GO:0048102 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051703 GO:0051704 GO:0051716 GO:0061919 GO:0070925 GO:0071496 GO:0071840 GO:0090702 GO:0098630 GO:0098657 GO:0098743 GO:0098827 GO:0099120 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

SAP SNARE_assoc

Protein Analysis

199

Amino Acids

21.67

Weight (kDa)

4.41

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019736)

Species	Orthologous Gene IDs
malus_domestica	MD10G1111700.v1.1
rosa_laevigata	RLG00000017705 RLG00000028352
rosa_multiflora	Rmu_sc0000756.1_g000018 Rmu_sc0008633.1_g000001
rosa_rugosa	Rorug04G0248800 Rorug06G0068900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	556
AciI	CCGC	2 cut(s)	437, 554
AclWI	GGATC	4 cut(s)	20, 279, 292, 322
AcyI	GRCGYC	2 cut(s)	516, 545
AgsI	TTSAA	4 cut(s)	59, 94, 275, 541
AjnI	CCWGG	5 cut(s)	63, 97, 279, 288, 330
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	6 cut(s)	190, 316, 415, 424, 433, 594
AluI	AGCT	6 cut(s)	190, 316, 415, 424, 433, 594
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	4 cut(s)	20, 279, 292, 322
Ama87I	CYCGRG	3 cut(s)	239, 419, 476
ApeKI	GCWGC	2 cut(s)	390, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	2 cut(s)	252, 297
AvaI	CYCGRG	3 cut(s)	239, 419, 476
AvaII	GGWCC	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	2 cut(s)	297, 477
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	402, 402
BccI	CCATC	4 cut(s)	334, 353, 485, 556
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	5 cut(s)	65, 99, 281, 290, 332
BciVI	GTATCC	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	252, 297
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	3 cut(s)	391, 416, 554
BlsI	GCNGC	3 cut(s)	392, 417, 555
Bme1390I	CCNGG	7 cut(s)	65, 99, 252, 281, 290, 297, 332
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	3 cut(s)	239, 419, 476
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	4 cut(s)	38, 286, 294, 517
BmrFI	CCNGG	7 cut(s)	65, 99, 252, 281, 290, 297, 332
BmsI	GCATC	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	4 cut(s)	37, 86, 209, 311
BpuMI	CCSGG	2 cut(s)	252, 297
Bsa29I	ATCGAT	2 cut(s)	462, 560
BsaHI	GRCGYC	2 cut(s)	516, 545
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	98, 280, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bse118I	RCCGGY	2 cut(s)	512, 518
Bse1I	ACTGG	1 cut(s)	14
Bse21I	CCTNAGG	1 cut(s)	161
BseBI	CCWGG	5 cut(s)	65, 99, 281, 290, 332
BseCI	ATCGAT	2 cut(s)	462, 560
BseDI	CCNNGG	3 cut(s)	98, 280, 288
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	402, 402
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	556
Bsh1285I	CGRYCG	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	515
BshVI	ATCGAT	2 cut(s)	462, 560
BsiEI	CGRYCG	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	3 cut(s)	239, 419, 476
BsiSI	CCGG	5 cut(s)	252, 297, 405, 513, 519
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	3 cut(s)	239, 419, 476
Bsp1286I	GDGCHC	3 cut(s)	126, 297, 477
Bsp143I	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
BspACI	CCGC	2 cut(s)	437, 554
BspCNI	CTCAG	1 cut(s)	153
BspDI	ATCGAT	2 cut(s)	462, 560
BspFNI	CGCG	1 cut(s)	556
BspLI	GGNNCC	4 cut(s)	38, 286, 294, 517
BspPI	GGATC	4 cut(s)	20, 279, 292, 322
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	512, 518
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	2 cut(s)	512, 518
BssECI	CCNNGG	3 cut(s)	98, 280, 288
BssMI	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
BssNI	GRCGYC	2 cut(s)	516, 545
Bst2UI	CCWGG	5 cut(s)	65, 99, 281, 290, 332
Bst4CI	ACNGT	3 cut(s)	130, 179, 470
Bst6I	CTCTTC	2 cut(s)	423, 525
BstACI	GRCGYC	2 cut(s)	516, 545
BstC8I	GCNNGC	4 cut(s)	314, 435, 510, 514
BstDEI	CTNAG	1 cut(s)	161
BstFNI	CGCG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	6 cut(s)	15, 49, 287, 330, 349, 560
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
BstMCI	CGRYCG	1 cut(s)	560
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 421, 430
BstNI	CCWGG	5 cut(s)	65, 99, 281, 290, 332
BstSCI	CCNGG	7 cut(s)	63, 97, 250, 279, 288, 295, 330
BstUI	CGCG	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	402, 402
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	12, 284
BstYI	RGATCY	2 cut(s)	12, 284
Bsu15I	ATCGAT	2 cut(s)	462, 560
Bsu36I	CCTNAGG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	165
BsuTUI	ATCGAT	2 cut(s)	462, 560
BtsIMutI	CAGTG	2 cut(s)	126, 184
Cac8I	GCNNGC	4 cut(s)	314, 435, 510, 514
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	2 cut(s)	512, 518
Cfr13I	GGNCC	1 cut(s)	36
ClaI	ATCGAT	2 cut(s)	462, 560
CseI	GACGC	2 cut(s)	382, 534
DdeI	CTNAG	1 cut(s)	161
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	6 cut(s)	14, 48, 286, 329, 348, 559
DpnII	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
Eam1104I	CTCTTC	2 cut(s)	423, 525
EarI	CTCTTC	2 cut(s)	423, 525
Eco24I	GRGCYC	2 cut(s)	297, 477
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	161
Eco88I	CYCGRG	3 cut(s)	239, 419, 476
EcoRII	CCWGG	5 cut(s)	63, 97, 279, 288, 330
EcoT38I	GRGCYC	2 cut(s)	297, 477
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
FaiI	YATR	2 cut(s)	134, 206
FaqI	GGGAC	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	391, 416, 554
FriOI	GRGCYC	2 cut(s)	297, 477
Fsp4HI	GCNGC	3 cut(s)	391, 416, 554
FspBI	CTAG	1 cut(s)	595
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	3 cut(s)	391, 416, 554
GsuI	CTGGAG	4 cut(s)	37, 86, 209, 311
HaeII	RGCGCY	1 cut(s)	519
HapII	CCGG	5 cut(s)	252, 297, 405, 513, 519
HgaI	GACGC	2 cut(s)	382, 534
HhaI	GCGC	1 cut(s)	518
Hin1I	GRCGYC	2 cut(s)	516, 545
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	6 cut(s)	29, 103, 138, 182, 237, 322
HpaII	CCGG	5 cut(s)	252, 297, 405, 513, 519
Hpy166II	GTNNAC	2 cut(s)	211, 484
Hpy188I	TCNGA	5 cut(s)	51, 108, 187, 321, 327
Hpy188III	TCNNGA	2 cut(s)	16, 241
Hpy8I	GTNNAC	2 cut(s)	211, 484
Hpy99I	CGWCG	4 cut(s)	269, 488, 550, 553
HpyAV	CCTTC	2 cut(s)	162, 535
HpyCH4III	ACNGT	3 cut(s)	130, 179, 470
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 421, 430
HpyF3I	CTNAG	1 cut(s)	161
Hsp92I	GRCGYC	2 cut(s)	516, 545
HspAI	GCGC	1 cut(s)	516
KasI	GGCGCC	1 cut(s)	515
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
Kzo9I	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	402, 402
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	6 cut(s)	14, 48, 286, 329, 348, 559
MboI	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
MboII	GAAGA	4 cut(s)	287, 440, 500, 542
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	2 cut(s)	12, 284
MhlI	GDGCHC	3 cut(s)	126, 297, 477
MluCI	AATT	1 cut(s)	42
Mly113I	GGCGCC	1 cut(s)	516
MlyI	GAGTC	2 cut(s)	132, 231
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	8 cut(s)	61, 78, 156, 231, 407, 467, 472, 526
MroNI	GCCGGC	1 cut(s)	512
MspI	CCGG	5 cut(s)	252, 297, 405, 513, 519
MspR9I	CCNGG	7 cut(s)	65, 99, 252, 281, 290, 297, 332
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	5 cut(s)	65, 99, 281, 290, 332
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	3 cut(s)	226, 421, 430
NaeI	GCCGGC	1 cut(s)	514
NarI	GGCGCC	1 cut(s)	516
NciI	CCSGG	2 cut(s)	252, 297
NdeII	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
NgoMIV	GCCGGC	1 cut(s)	512
NlaIV	GGNNCC	4 cut(s)	38, 286, 294, 517
NmuCI	GTSAC	1 cut(s)	367
PaeR7I	CTCGAG	3 cut(s)	239, 419, 476
PciSI	GCTCTTC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	3 cut(s)	474, 483, 557
PdiI	GCCGGC	1 cut(s)	514
PfeI	GAWTC	4 cut(s)	29, 103, 182, 322
PfoI	TCCNGGA	1 cut(s)	63
PkrI	GCNGC	3 cut(s)	392, 417, 555
Ple19I	CGATCG	1 cut(s)	560
PleI	GAGTC	2 cut(s)	132, 231
PluTI	GGCGCC	1 cut(s)	519
PpsI	GAGTC	2 cut(s)	132, 231
Psp6I	CCWGG	5 cut(s)	63, 97, 279, 288, 330
PspGI	CCWGG	5 cut(s)	63, 97, 279, 288, 330
PspN4I	GGNNCC	4 cut(s)	38, 286, 294, 517
PspPI	GGNCC	1 cut(s)	36
PspXI	VCTCGAGB	2 cut(s)	419, 476
PsuI	RGATCY	2 cut(s)	12, 284
PvuI	CGATCG	1 cut(s)	560
SalI	GTCGAC	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	423
SatI	GCNGC	3 cut(s)	391, 416, 554
Sau3AI	GATC	6 cut(s)	12, 46, 284, 327, 346, 557
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	132, 231
ScrFI	CCNGG	7 cut(s)	65, 99, 252, 281, 290, 297, 332
SduI	GDGCHC	3 cut(s)	126, 297, 477
SfaNI	GCATC	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	517
Sfr274I	CTCGAG	3 cut(s)	239, 419, 476
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	3 cut(s)	239, 419, 476
SmlI	CTYRAG	3 cut(s)	239, 419, 476
SmoI	CTYRAG	3 cut(s)	239, 419, 476
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	437, 554
SspDI	GGCGCC	1 cut(s)	515
SspMI	CTAG	1 cut(s)	595
StyD4I	CCNGG	7 cut(s)	63, 97, 250, 279, 288, 295, 330
TaaI	ACNGT	3 cut(s)	130, 179, 470
TaqI	TCGA	6 cut(s)	240, 420, 462, 477, 483, 560
TasI	AATT	1 cut(s)	42
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	4 cut(s)	29, 103, 182, 322
TscAI	CASTG	2 cut(s)	133, 184
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	390, 415
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	2 cut(s)	133, 184
VpaK11BI	GGWCC	1 cut(s)	36
XhoI	CTCGAG	3 cut(s)	239, 419, 476
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.