MD10G1339600.v1.1

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
41519430 .. 41524031
4602 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1339600.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGCTTCTCCATCTTCTTCTGATCCTATTCATCCTCGAGATGTGTGTATAGTGGGAGTCGCCCGCACGCCCATGGGTGGATTCCTTGGCTCCCTCTCCTCTTTCTCTGCTACCCACCTCGGCTCTCTTGCTATTCAATGTGCTCTTAAGAGAGCAAATGTGGATCCTTCCCTTGTGCAAGAGGTCTTCTTTGGGAATGTTCTAAGCGCCAATCTTGGCCAAGCTCCTGCCAGACAGGCTGCTCTCGCTGCCGGCATCCCCAACTCTGTCATTTGCACCACCATTAACAAAGTTTGTGCTTCTGGGATGAAAGCCACAATGCTAGCAGCACAAACCATCCAGCTGGGTCTCAACGATGTCGTTGTCGCTGGTGGCATGGAAAGCATGTCCAATGCCCCTAAATATCTACCAGCTGCCAGGCAAGGGTCTCGATTAGGACATGATACCATTGTCGATGGCATGCTTAAAGATGGTCTTTGGGATGTCTATAATGACTTTGGAATGGGAGTTTGTGCAGAAATATGTGCTGATCAACTTTCCATATCAAGGGAAGAGCAGGACTCTTATGCTATTCAAAGTTTTGAGCGTGGACTATCTGCGCAAGATGCTGGTCTCTTTAAATGGGAAATAGTTCCGGTTGAAGTTTCTGGGGGAAGAGGAAAGCCTTCCTCAACTGTTGACAAGGATGATGGTTTACAAAAGTTTGATGCTGCAAAATTAAAGAAGCTTCGACCAAGTTTTAAGGAGAATGGGGGTTCTGTTACTGCTGGCAATGCTTCTAGCATAAGCGATGGTGCAGCTGCACTAGTGCTAGTCAGTGGGGAGAAGGCACTTCAACTTGGGTTACAAGTAATTGCTAAGATTAAGGGATATGCTGATGCAGCTCAGGCGCCTGAATTATTTACAACTGCTCCAGCCCTTGCACTACCAAAAGCTATTTCAAATGCTGGTTTGGAGGCTTCTCAAATTGATTACTATGAAATCAATGAAGCATTTTCAGTAGTTGCTCTTGCCAATCAAAAGCTGCTGGGCCTTAATCCCGATAGAGTTAATGCCCACGGTGGAGCTGTATCTTTGGGACACCCGTTAGGATGCAGTGGAGCTCGTATCTTGGTCACATTGTTAGGGGTACTGAGACATAAGAATGGGAGGTATGGGGTTGGTGGCATATGCAACGGGGGAGGGGGGGCATCTGCTCTTGTTCTTGAGCTCATGCCAATAACTTGGCGGCTGGGACCGTCTTTGTTATGA

Protein Analysis

417

Amino Acids

42.96

Weight (kDa)

6.6

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 15 - 274 2e-92 Thiolase, N-terminal domain
Thiolase_C PF02803 283 - 403 1.1e-42 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015847)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47720
fragaria_vesca FvH4_3g00290
malus_domestica MD10G1339600.v1.1
prunus_persica Prupe.4G003300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000431
rosa_laevigata RLG00000030866
rosa_multiflora Rmu_co8394755.1_g000001 Rmu_sc0003949.1_g000003 Rmu_ssc0000385.1_g000015
rosa_roxburghii Rroxscaffold_1G00075730
rosa_rugosa Rorug04G0383500 Rorug04G0383500
rosa_samantha Rh5AG003500 Rh5CG003700
rosa_wichuraiana Rw5G000350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 889
AciI CCGC 2 cut(s) 64, 1228
AclWI GGATC 3 cut(s) 17, 158, 171
AcoI YGGCCR 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 890
AfaI GTAC 1 cut(s) 1131
AfiI CCNNNNNNNGG 3 cut(s) 77, 423, 546
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 5 cut(s) 137, 575, 641, 836, 942
AhlI ACTAGT 1 cut(s) 805
AjnI CCWGG 1 cut(s) 416
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
Alw21I GWGCWC 3 cut(s) 145, 1105, 1212
Alw26I GTCTC 4 cut(s) 353, 432, 617, 1129
AlwI GGATC 3 cut(s) 17, 158, 171
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 2 cut(s) 217, 1030
ApeKI GCWGC 9 cut(s) 239, 248, 326, 413, 710, 797, 800, 881, 1024
Asp700I GAANNNNTTC 2 cut(s) 630, 664
AspLEI GCGC 3 cut(s) 209, 601, 892
AspS9I GGNCC 2 cut(s) 1030, 1235
AsuNHI GCTAGC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 1235
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BalI TGGCCA 1 cut(s) 219
BamHI GGATCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 889
BanII GRGCYC 2 cut(s) 1105, 1212
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 3 cut(s) 145, 1105, 1212
BbvI GCAGC 9 cut(s) 226, 235, 338, 400, 697, 787, 809, 893, 1011
BccI CCATC 6 cut(s) 19, 344, 449, 464, 683, 785
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 418
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 4 cut(s) 353, 432, 617, 1129
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 4 cut(s) 323, 780, 806, 812
BfoI RGCGCY 2 cut(s) 210, 893
BfrI CTTAAG 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 1235
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 1030, 1235
BmiI GGNNCC 4 cut(s) 91, 165, 891, 1236
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 6 cut(s) 264, 595, 697, 868, 1082, 1199
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 178
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 1226
BsaHI GRCGYC 1 cut(s) 890
BsaI GGTCTC 3 cut(s) 353, 432, 617
BsaJI CCNNGG 4 cut(s) 72, 85, 118, 1057
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 895, 925
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 423, 546
Bse118I RCCGGY 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 778
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 4 cut(s) 72, 85, 118, 1057
BseGI GGATG 7 cut(s) 31, 255, 312, 336, 487, 691, 1097
BseLI CCNNNNNNNGG 3 cut(s) 77, 423, 546
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 2 cut(s) 899, 1124
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 9 cut(s) 226, 235, 338, 400, 697, 787, 809, 893, 1011
BseYI CCCAGC 3 cut(s) 343, 1027, 1231
BsgI GTGCAG 3 cut(s) 534, 786, 816
BshFI GGCC 2 cut(s) 219, 1032
BshNI GGYRCC 1 cut(s) 889
BsiHKAI GWGCWC 3 cut(s) 145, 1105, 1212
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 252, 635
BslFI GGGAC 1 cut(s) 1092
BslI CCNNNNNNNGG 3 cut(s) 77, 423, 546
BsmAI GTCTC 4 cut(s) 353, 432, 617, 1129
BsmFI GGGAC 1 cut(s) 1092
BsnI GGCC 2 cut(s) 219, 1032
Bso31I GGTCTC 3 cut(s) 353, 432, 617
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 145, 1105, 1212
Bsp143I GATC 3 cut(s) 22, 163, 529
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 2 cut(s) 64, 1228
BspANI GGCC 2 cut(s) 219, 1032
BspCNI CTCAG 2 cut(s) 898, 1125
BspLI GGNNCC 4 cut(s) 91, 165, 891, 1236
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 3 cut(s) 17, 158, 171
BspQI GCTCTTC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 889
BspTI CTTAAG 1 cut(s) 146
BspTNI GGTCTC 3 cut(s) 353, 432, 617
BsrDI GCAATG 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 4 cut(s) 72, 85, 118, 1057
BssMI GATC 3 cut(s) 22, 163, 529
BssNI GRCGYC 1 cut(s) 890
BssT1I CCWWGG 2 cut(s) 72, 85
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 3 cut(s) 676, 1061, 1239
Bst6I CTCTTC 2 cut(s) 546, 649
BstACI GRCGYC 1 cut(s) 890
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 6 cut(s) 64, 68, 253, 324, 461, 769
BstDEI CTNAG 4 cut(s) 203, 858, 885, 1133
BstDSI CCRYGG 2 cut(s) 72, 1057
BstF5I GGATG 7 cut(s) 31, 255, 312, 336, 487, 691, 1097
BstH2I RGCGCY 2 cut(s) 210, 893
BstHHI GCGC 3 cut(s) 209, 601, 892
BstKTI GATC 3 cut(s) 25, 166, 532
BstMAI GTCTC 4 cut(s) 353, 432, 617, 1129
BstMBI GATC 3 cut(s) 22, 163, 529
BstMWI GCNNNNNNNGC 8 cut(s) 236, 245, 248, 381, 605, 773, 881, 887
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 2 cut(s) 388, 463
BstSCI CCNGG 1 cut(s) 416
BstV1I GCAGC 9 cut(s) 226, 235, 338, 400, 697, 787, 809, 893, 1011
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 2 cut(s) 343, 1224
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 2 cut(s) 219, 1032
BtgI CCRYGG 2 cut(s) 72, 1057
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 7 cut(s) 31, 255, 312, 336, 487, 691, 1097
BtsI GCAGTG 1 cut(s) 1102
BtsIMutI CAGTG 2 cut(s) 823, 1102
Cac8I GCNNGC 6 cut(s) 64, 68, 253, 324, 461, 769
CfoI GCGC 3 cut(s) 209, 601, 892
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 1030, 1235
Csp6I GTAC 1 cut(s) 1130
CviAII CATG 6 cut(s) 73, 376, 385, 440, 460, 1213
CviQI GTAC 1 cut(s) 1130
DdeI CTNAG 4 cut(s) 203, 858, 885, 1133
DinI GGCGCC 1 cut(s) 891
DpnI GATC 3 cut(s) 24, 165, 531
DpnII GATC 3 cut(s) 22, 163, 529
DraI TTTAAA 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 546, 649
EarI CTCTTC 2 cut(s) 546, 649
Ecl136II GAGCTC 2 cut(s) 1103, 1210
Eco130I CCWWGG 2 cut(s) 72, 85
Eco24I GRGCYC 2 cut(s) 1105, 1212
Eco31I GGTCTC 3 cut(s) 353, 432, 617
Eco47I GGWCC 1 cut(s) 1235
Eco53kI GAGCTC 2 cut(s) 1103, 1210
Eco88I CYCGRG 1 cut(s) 36
EcoICRI GAGCTC 2 cut(s) 1103, 1210
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 72, 85
EcoT38I GRGCYC 2 cut(s) 1105, 1212
EgeI GGCGCC 1 cut(s) 891
EheI GGCGCC 1 cut(s) 891
ErhI CCWWGG 2 cut(s) 72, 85
FaeI CATG 6 cut(s) 76, 379, 388, 443, 463, 1216
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 1 cut(s) 1092
FatI CATG 6 cut(s) 72, 375, 384, 439, 459, 1212
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 1169
FbaI TGATCA 1 cut(s) 529
FokI GGATG 7 cut(s) 18, 242, 319, 323, 494, 698, 1104
FriOI GRGCYC 2 cut(s) 1105, 1212
FspBI CTAG 4 cut(s) 323, 780, 806, 812
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 3 cut(s) 208, 600, 891
GsaI CCCAGC 3 cut(s) 347, 1031, 1235
GsuI CTGGAG 1 cut(s) 897
HaeII RGCGCY 2 cut(s) 210, 893
HaeIII GGCC 2 cut(s) 219, 1032
HapII CCGG 2 cut(s) 252, 635
HhaI GCGC 3 cut(s) 209, 601, 892
Hin1I GRCGYC 1 cut(s) 890
Hin1II CATG 6 cut(s) 76, 379, 388, 443, 463, 1216
Hin6I GCGC 3 cut(s) 207, 599, 890
HinP1I GCGC 3 cut(s) 207, 599, 890
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 3 cut(s) 57, 81, 560
HpaII CCGG 2 cut(s) 252, 635
Hpy166II GTNNAC 3 cut(s) 590, 679, 695
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 4 cut(s) 38, 429, 1040, 1205
Hpy8I GTNNAC 3 cut(s) 590, 679, 695
HpyAV CCTTC 3 cut(s) 177, 675, 820
HpyCH4III ACNGT 3 cut(s) 676, 1061, 1239
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 245, 248, 381, 605, 773, 881, 887
HpyF3I CTNAG 4 cut(s) 203, 858, 885, 1133
Hsp92I GRCGYC 1 cut(s) 890
Hsp92II CATG 6 cut(s) 76, 379, 388, 443, 463, 1216
HspAI GCGC 3 cut(s) 207, 599, 890
KasI GGCGCC 1 cut(s) 889
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 22, 163, 529
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 5 cut(s) 95, 229, 916, 1064, 1100
Lsp1109I GCAGC 9 cut(s) 226, 235, 338, 400, 697, 787, 809, 893, 1011
LweI GCATC 6 cut(s) 264, 595, 697, 868, 1082, 1199
MaeI CTAG 4 cut(s) 323, 780, 806, 812
MaeIII GTNAC 3 cut(s) 760, 843, 1114
MalI GATC 3 cut(s) 24, 165, 531
MboI GATC 3 cut(s) 22, 163, 529
MboII GAAGA 5 cut(s) 6, 9, 178, 563, 666
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 145, 1105, 1212
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 4 cut(s) 716, 852, 896, 966
MluNI TGGCCA 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 890
MlyI GAGTC 2 cut(s) 66, 554
Mox20I TGGCCA 1 cut(s) 219
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 2 cut(s) 630, 664
MscI TGGCCA 1 cut(s) 219
MseI TTAA 9 cut(s) 147, 285, 465, 618, 719, 741, 864, 1035, 1050
MslI CAYNNNNRTG 2 cut(s) 71, 1143
Msp20I TGGCCA 1 cut(s) 219
MspA1I CMGCKG 3 cut(s) 343, 413, 800
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 2 cut(s) 252, 635
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 8 cut(s) 236, 245, 248, 381, 605, 773, 881, 887
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 1 cut(s) 890
NcoI CCATGG 1 cut(s) 72
NdeI CATATG 1 cut(s) 1169
NdeII GATC 3 cut(s) 22, 163, 529
NgoMIV GCCGGC 1 cut(s) 251
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 6 cut(s) 76, 379, 388, 443, 463, 1216
NlaIV GGNNCC 4 cut(s) 91, 165, 891, 1236
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 1114
NsbI TGCGCA 1 cut(s) 600
NspI RCATGY 2 cut(s) 388, 463
PaeI GCATGC 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 2 cut(s) 630, 664
PfeI GAWTC 1 cut(s) 81
PleI GAGTC 2 cut(s) 65, 554
PluTI GGCGCC 1 cut(s) 893
PpsI GAGTC 2 cut(s) 65, 554
Psp124BI GAGCTC 2 cut(s) 1105, 1212
Psp6I CCWGG 1 cut(s) 416
PspFI CCCAGC 3 cut(s) 343, 1027, 1231
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 4 cut(s) 91, 165, 891, 1236
PspPI GGNCC 2 cut(s) 1030, 1235
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 3 cut(s) 343, 413, 800
RsaI GTAC 1 cut(s) 1131
RsaNI GTAC 1 cut(s) 1130
RseI CAYNNNNRTG 2 cut(s) 71, 1143
SacI GAGCTC 2 cut(s) 1105, 1212
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 9 cut(s) 147, 285, 465, 618, 719, 741, 864, 1035, 1050
Sau3AI GATC 3 cut(s) 22, 163, 529
Sau96I GGNCC 2 cut(s) 1030, 1235
SchI GAGTC 2 cut(s) 66, 554
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 3 cut(s) 145, 1105, 1212
SfaNI GCATC 6 cut(s) 264, 595, 697, 868, 1082, 1199
SfoI GGCGCC 1 cut(s) 891
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 1235
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 71, 1143
SmlI CTYRAG 3 cut(s) 36, 146, 1205
SmoI CTYRAG 3 cut(s) 36, 146, 1205
SpeI ACTAGT 1 cut(s) 805
SphI GCATGC 1 cut(s) 463
Sse9I AATT 4 cut(s) 716, 852, 896, 966
SsiI CCGC 2 cut(s) 64, 1228
SspDI GGCGCC 1 cut(s) 889
SspMI CTAG 4 cut(s) 323, 780, 806, 812
SstI GAGCTC 2 cut(s) 1105, 1212
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 2 cut(s) 72, 85
TaaI ACNGT 3 cut(s) 676, 1061, 1239
TaqI TCGA 4 cut(s) 37, 430, 453, 730
TasI AATT 4 cut(s) 716, 852, 896, 966
TauI GCSGC 1 cut(s) 1231
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 9 cut(s) 147, 285, 465, 618, 719, 741, 864, 1035, 1050
Tru9I TTAA 9 cut(s) 147, 285, 465, 618, 719, 741, 864, 1035, 1050
TscAI CASTG 2 cut(s) 823, 1102
TseFI GTSAC 1 cut(s) 1114
TseI GCWGC 9 cut(s) 239, 248, 326, 413, 710, 797, 800, 881, 1024
Tsp45I GTSAC 1 cut(s) 1114
TspDTI ATGAA 4 cut(s) 20, 323, 993, 1002
TspRI CASTG 2 cut(s) 823, 1102
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 1235
XceI RCATGY 2 cut(s) 388, 463
XhoI CTCGAG 1 cut(s) 36
XmnI GAANNNNTTC 2 cut(s) 630, 664
XspI CTAG 4 cut(s) 323, 780, 806, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.