Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015847

Physical Location & Seq

Genomic Coordinates Reverse (-)

298489 .. 301415

Gene Structure 2927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTTCATCATCGTCTTCTGATTCTTCTATTAAACCACGAGATGTTTGTATAGTGGGTGTGGCTCGTACCCCCATGGGCGGTTTCCTTGGTTCCCTCTCGTCTCTCTCAGCAACCCGCCTTGGCTCTATTGCCATCCAATGTGCTCTCAAGAGAGCAAATTTGGATCCCTCACTGGTGCAAGAGGTCTTCTTTGGGAATGTCCTAAGCGCCAATCTGGGGCAAGCTCCTGCCAGACAGGCTGCTTTAGGTGCAGGCATTCCAAACTCTGTCGTCTGCACCACTATTAACAAAGTCTGTTCATCCGGCATGAAAGCCGCTATGATCGCTGCACAAACCATCCAGCTCGGTCATAATGATATCGTTGTTGCTGGTGGCATGGAAAGCATGTCCAATTCCCCCAAGTATCTACCAAATGCCAGACAGGGATCCCGGTTAGGACATGATAATATTGTTGATGGCATGCTTAAGGATGGTTTGTGGGATGTCTATAATGACTTTGGAATGGGAGTTTGTGCAGAATTATGTGCTGACAAATACTCCATATCCAGGGAACAGCAGGATGGTTATGCTATTCGAAGTTTTGAGCGTGGAATTTCTGCACAAGATGCCGGTCTCTTTGCATGGGAAATAGTTCCGGTTGAAGTTCCTAGGGGACAAGGAAAGCCTTCCTCAATTGTTGACAAGGATGATGGTTTACAACAGGGTCATGTTCTTACAGGTATTGAGGCAGAAAAATGGGAGCTAGGGCCTTATGGTTTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Gp_dh_C Thiolase_C Thiolase_N

Protein Analysis

256

Amino Acids

26.85

Weight (kDa)

5.4

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	16 - 239	2.1e-75	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47720
fragaria_vesca	FvH4_3g00290
malus_domestica	MD10G1339600.v1.1
prunus_persica	Prupe.4G003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000431
rosa_laevigata	RLG00000030866
rosa_multiflora	Rmu_co8394755.1_g000001 Rmu_sc0003949.1_g000003 Rmu_ssc0000385.1_g000015
rosa_roxburghii	Rroxscaffold_1G00075730
rosa_rugosa	Rorug04G0383500 Rorug04G0383500
rosa_samantha	Rh5AG003500 Rh5CG003700
rosa_wichuraiana	Rw5G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	81, 118, 318
AclWI	GGATC	4 cut(s)	161, 174, 423, 436
AcsI	RAATTY	2 cut(s)	160, 594
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	3 cut(s)	80, 219, 549
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	3 cut(s)	227, 346, 745
AluI	AGCT	3 cut(s)	227, 346, 745
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	108, 620
AlwI	GGATC	4 cut(s)	161, 174, 423, 436
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	242, 329
ApoI	RAATTY	2 cut(s)	160, 594
Asp700I	GAANNNNTTC	2 cut(s)	633, 667
AspA2I	CCTAGG	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	433
AsuII	TTCGAA	1 cut(s)	577
AvrII	CCTAGG	1 cut(s)	650
BamHI	GGATCC	2 cut(s)	166, 428
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	2 cut(s)	9, 181
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	229, 316
BccI	CCATC	6 cut(s)	143, 347, 452, 467, 557, 686
BciT130I	CCWGG	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	108, 620
BfaI	CTAG	2 cut(s)	651, 746
BfoI	RGCGCY	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	467
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	243, 318, 330
BlnI	CCTAGG	1 cut(s)	650
BlsI	GCNGC	3 cut(s)	244, 319, 331
Bme1390I	CCNGG	2 cut(s)	433, 550
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	3 cut(s)	94, 168, 430
BmrFI	CCNGG	2 cut(s)	433, 550
BmsI	GCATC	1 cut(s)	598
BpiI	GAAGAC	2 cut(s)	9, 181
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	5 cut(s)	75, 88, 121, 549, 650
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 219, 549
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	5 cut(s)	75, 88, 121, 549, 650
BseGI	GGATG	7 cut(s)	135, 302, 339, 478, 490, 568, 694
BseLI	CCNNNNNNNGG	3 cut(s)	80, 219, 549
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	229, 316
BsgI	GTGCAG	5 cut(s)	262, 273, 315, 537, 585
BshFI	GGCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	306, 433, 612, 638
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	3 cut(s)	80, 219, 549
BsmAI	GTCTC	2 cut(s)	108, 620
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	751
Bso31I	GGTCTC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	166, 324, 428
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	81, 118, 318
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	3 cut(s)	94, 168, 430
BspPI	GGATC	4 cut(s)	161, 174, 423, 436
BspT104I	TTCGAA	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	5 cut(s)	75, 88, 121, 549, 650
BssMI	GATC	3 cut(s)	166, 324, 428
BssSI	CACGAG	1 cut(s)	39
BssT1I	CCWWGG	4 cut(s)	75, 88, 121, 650
Bst2BI	CACGAG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	550
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	225, 256, 464
BstDEI	CTNAG	2 cut(s)	109, 206
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	7 cut(s)	135, 302, 339, 478, 490, 568, 694
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	169, 327, 431
BstMAI	GTCTC	2 cut(s)	108, 620
BstMBI	GATC	3 cut(s)	166, 324, 428
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 251, 326, 384, 608
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	2 cut(s)	391, 466
BstSCI	CCNGG	2 cut(s)	431, 548
BstV1I	GCAGC	2 cut(s)	229, 316
BstV2I	GAAGAC	2 cut(s)	9, 181
BstX2I	RGATCY	2 cut(s)	166, 428
BstYI	RGATCY	2 cut(s)	166, 428
BsuRI	GGCC	1 cut(s)	751
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	7 cut(s)	135, 302, 339, 478, 490, 568, 694
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	3 cut(s)	225, 256, 464
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	8 cut(s)	76, 310, 379, 388, 443, 463, 624, 710
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	2 cut(s)	109, 206
DpnI	GATC	3 cut(s)	168, 326, 430
DpnII	GATC	3 cut(s)	166, 324, 428
Eco130I	CCWWGG	4 cut(s)	75, 88, 121, 650
Eco31I	GGTCTC	1 cut(s)	620
Eco32I	GATATC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	4 cut(s)	75, 88, 121, 650
ErhI	CCWWGG	4 cut(s)	75, 88, 121, 650
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	8 cut(s)	79, 313, 382, 391, 446, 466, 627, 713
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	8 cut(s)	75, 309, 378, 387, 442, 462, 623, 709
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	243, 318, 330
FokI	GGATG	7 cut(s)	122, 289, 326, 485, 497, 575, 701
Fsp4HI	GCNGC	3 cut(s)	243, 318, 330
FspBI	CTAG	2 cut(s)	651, 746
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	243, 318, 330
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	4 cut(s)	306, 433, 612, 638
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	8 cut(s)	79, 313, 382, 391, 446, 466, 627, 713
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	4 cut(s)	306, 433, 612, 638
Hpy166II	GTNNAC	2 cut(s)	682, 698
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	682, 698
HpyAV	CCTTC	1 cut(s)	678
HpyCH4V	TGCA	7 cut(s)	181, 254, 279, 332, 518, 602, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 251, 326, 384, 608
HpyF3I	CTNAG	2 cut(s)	109, 206
Hsp92II	CATG	8 cut(s)	79, 313, 382, 391, 446, 466, 627, 713
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	166, 324, 428
LmnI	GCTCC	2 cut(s)	232, 742
Lsp1109I	GCAGC	2 cut(s)	229, 316
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	2 cut(s)	651, 746
MalI	GATC	3 cut(s)	168, 326, 430
MboI	GATC	3 cut(s)	166, 324, 428
MboII	GAAGA	3 cut(s)	9, 18, 181
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	166, 428
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	5 cut(s)	160, 394, 521, 594, 675
MnlI	CCTC	5 cut(s)	107, 178, 181, 682, 721
MroXI	GAANNNNTTC	2 cut(s)	633, 667
MseI	TTAA	3 cut(s)	33, 288, 468
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	4 cut(s)	306, 433, 612, 638
MspR9I	CCNGG	2 cut(s)	433, 550
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	5 cut(s)	239, 251, 326, 384, 608
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	166, 324, 428
NlaIII	CATG	8 cut(s)	79, 313, 382, 391, 446, 466, 627, 713
NlaIV	GGNNCC	3 cut(s)	94, 168, 430
NspI	RCATGY	2 cut(s)	391, 466
NspV	TTCGAA	1 cut(s)	577
PaeI	GCATGC	1 cut(s)	466
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	633, 667
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	244, 319, 331
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	3 cut(s)	94, 168, 430
PspPI	GGNCC	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	166, 428
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	33, 288, 468
SatI	GCNGC	3 cut(s)	243, 318, 330
Sau3AI	GATC	3 cut(s)	166, 324, 428
Sau96I	GGNCC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	433, 550
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	6 cut(s)	189, 229, 253, 348, 724, 747
SfaNI	GCATC	1 cut(s)	598
SfuI	TTCGAA	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	149, 467
SmoI	CTYRAG	2 cut(s)	149, 467
SphI	GCATGC	1 cut(s)	466
Sse9I	AATT	5 cut(s)	160, 394, 521, 594, 675
SsiI	CCGC	3 cut(s)	81, 118, 318
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	2 cut(s)	651, 746
StyD4I	CCNGG	2 cut(s)	431, 548
StyI	CCWWGG	4 cut(s)	75, 88, 121, 650
TaqI	TCGA	1 cut(s)	577
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	5 cut(s)	160, 394, 521, 594, 675
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	33, 288, 468
Tru9I	TTAA	3 cut(s)	33, 288, 468
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	242, 329
TspDTI	ATGAA	2 cut(s)	291, 326
TspRI	CASTG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	467
XapI	RAATTY	2 cut(s)	160, 594
XceI	RCATGY	2 cut(s)	391, 466
XmaJI	CCTAGG	1 cut(s)	650
XmnI	GAANNNNTTC	2 cut(s)	633, 667
XspI	CTAG	2 cut(s)	651, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.