Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003949.1

Orthogroup ID

OG0015847

Physical Location & Seq

Genomic Coordinates Reverse (-)

6654 .. 8874

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003949.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atggcttcatcatcgtcttctgttaaaccacgagatgtttgtatagtgggtgtggctcgtacccccatgggcggtttccttggttccctctcgtctctctcagcaacccgccttggctctattgccatccaatgtgctctcaagagagcaaatttggacccctcactcgtgcaagaggtcttctttgggaatgtcctaagcgccaatttgggccaagctcccgccagacaggctgctttaggtgcaggcattccaaactctgtcgtttgcaccactattaacaaagtctgttcgtccggcatgaaagccgctatgatcgctgcacaaaccatccagctgggtcataatgatatcgttgttgctggtggcatggaaagcatgtccaatgcccccaagtatctaccaaatgccagacagggatcccggttaggacatgataatattgttgatggcatgcttaaggatggtttgtgggatgtctataatgactttggaatgggagtttgtgcagaaatatgtgctgacaaatactccatatccagggagcaccaggatggttatgctattcaaagttttgagcgtggaatttctgcacaagatgctggtctctttgcatgggaaatagttccggttgaagttcctgggggacgaggaaagccttcctcaattgttgacaaggatgatggtttacaacagtttgatgctgcaaaattgaaaaagcttcgaccaagttttaagaagagtgggggttcagttactgctggcaatgcttctatcataagtgatggtgcagctgcattagtgctagtgagtggggagaaggcacttgaacttgggttacaagtaattgctaagataaaaggatttgctgatgcagctcaggcacctgagtggtttacaactgctcctgcccttgcaataccaagggctatttcaaatgctggtttggaggcttctcaaatagattactatgaaataaatgaggcatttgctgtaagaatacacgctcttgttctttggtacgtcattttaattatagagcttttggtgcatatcattgttttaatctctgcaggtggtggctcttgcaaatcaaaagctccttggccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Gp_dh_C Thiolase_C Thiolase_N

Protein Analysis

370

Amino Acids

38.71

Weight (kDa)

6.95

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47720
fragaria_vesca	FvH4_3g00290
malus_domestica	MD10G1339600.v1.1
prunus_persica	Prupe.4G003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000431
rosa_laevigata	RLG00000030866
rosa_multiflora	Rmu_co8394755.1_g000001 Rmu_sc0003949.1_g000003 Rmu_ssc0000385.1_g000015
rosa_roxburghii	Rroxscaffold_1G00075730
rosa_rugosa	Rorug04G0383500 Rorug04G0383500
rosa_samantha	Rh5AG003500 Rh5CG003700
rosa_wichuraiana	Rw5G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1064
Acc36I	ACCTGC	1 cut(s)	1064
AccB1I	GGYRCC	1 cut(s)	883
AciI	CCGC	4 cut(s)	72, 109, 222, 309
AclWI	GGATC	2 cut(s)	414, 427
AcsI	RAATTY	2 cut(s)	151, 585
AfaI	GTAC	2 cut(s)	61, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	71, 540
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	5 cut(s)	569, 635, 715, 830, 936
AjnI	CCWGG	3 cut(s)	539, 549, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	916, 948
AleI	CACNNNNGTG	1 cut(s)	889
AluBI	AGCT	7 cut(s)	218, 337, 721, 794, 878, 1042, 1100
AluI	AGCT	7 cut(s)	218, 337, 721, 794, 878, 1042, 1100
Alw21I	GWGCWC	2 cut(s)	139, 549
Alw26I	GTCTC	2 cut(s)	99, 611
AlwI	GGATC	2 cut(s)	414, 427
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	211, 1106
ApeKI	GCWGC	6 cut(s)	233, 320, 704, 791, 794, 875
ApoI	RAATTY	2 cut(s)	151, 585
Asp700I	GAANNNNTTC	2 cut(s)	624, 658
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	157, 211
AsuC2I	CCSGG	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	883
BauI	CACGAG	2 cut(s)	30, 167
BbsI	GAAGAC	2 cut(s)	9, 172
Bbv12I	GWGCWC	2 cut(s)	139, 549
BbvI	GCAGC	6 cut(s)	220, 307, 691, 781, 803, 887
BccI	CCATC	7 cut(s)	134, 338, 443, 458, 548, 677, 779
BciT130I	CCWGG	3 cut(s)	541, 551, 642
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	99, 611
BfaI	CTAG	1 cut(s)	806
BfmI	CTRYAG	1 cut(s)	1071
BfoI	RGCGCY	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	1064
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	7 cut(s)	234, 309, 321, 705, 792, 795, 876
BlsI	GCNGC	7 cut(s)	235, 310, 322, 706, 793, 796, 877
Bme1390I	CCNGG	4 cut(s)	424, 541, 551, 642
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	157, 211
BmiI	GGNNCC	4 cut(s)	85, 159, 421, 885
BmrFI	CCNGG	4 cut(s)	424, 541, 551, 642
BmsI	GCATC	3 cut(s)	589, 691, 862
BpiI	GAAGAC	2 cut(s)	9, 172
Bpu10I	CCTNAGC	2 cut(s)	197, 879
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	7 cut(s)	66, 79, 112, 540, 641, 923, 1103
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	4 cut(s)	515, 545, 889, 919
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 540
Bse3DI	GCAATG	1 cut(s)	772
BseBI	CCWGG	3 cut(s)	541, 551, 642
BseDI	CCNNGG	7 cut(s)	66, 79, 112, 540, 641, 923, 1103
BseGI	GGATG	6 cut(s)	126, 330, 469, 481, 559, 685
BseLI	CCNNNNNNNGG	2 cut(s)	71, 540
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	3 cut(s)	114, 879, 893
BseXI	GCAGC	6 cut(s)	220, 307, 691, 781, 803, 887
BseYI	CCCAGC	1 cut(s)	337
BsgI	GTGCAG	5 cut(s)	264, 306, 528, 576, 810
BshFI	GGCC	2 cut(s)	213, 1108
BshNI	GGYRCC	1 cut(s)	883
BsiHKAI	GWGCWC	2 cut(s)	139, 549
BsiSI	CCGG	3 cut(s)	297, 424, 629
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	2 cut(s)	71, 540
BsmAI	GTCTC	2 cut(s)	99, 611
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	213, 1108
Bso31I	GGTCTC	1 cut(s)	611
Bsp1286I	GDGCHC	2 cut(s)	139, 549
Bsp143I	GATC	2 cut(s)	315, 419
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	4 cut(s)	72, 109, 222, 309
BspANI	GGCC	2 cut(s)	213, 1108
BspCNI	CTCAG	3 cut(s)	113, 880, 892
BspLI	GGNNCC	4 cut(s)	85, 159, 421, 885
BspMAI	CTGCAG	1 cut(s)	1075
BspMI	ACCTGC	1 cut(s)	1064
BspPI	GGATC	2 cut(s)	414, 427
BspT107I	GGYRCC	1 cut(s)	883
BspTI	CTTAAG	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	772
BssECI	CCNNGG	7 cut(s)	66, 79, 112, 540, 641, 923, 1103
BssMI	GATC	2 cut(s)	315, 419
BssSI	CACGAG	2 cut(s)	30, 167
BssT1I	CCWWGG	5 cut(s)	66, 79, 112, 923, 1103
Bst2BI	CACGAG	2 cut(s)	30, 167
Bst2UI	CCWGG	3 cut(s)	541, 551, 642
Bst4CI	ACNGT	1 cut(s)	696
Bst6I	CTCTTC	1 cut(s)	734
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	247, 455, 763
BstDEI	CTNAG	5 cut(s)	100, 197, 852, 879, 888
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	6 cut(s)	126, 330, 469, 481, 559, 685
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	318, 422
BstMAI	GTCTC	2 cut(s)	99, 611
BstMBI	GATC	2 cut(s)	315, 419
BstMWI	GCNNNNNNNGC	9 cut(s)	230, 242, 317, 375, 599, 767, 875, 881, 1048
BstNI	CCWGG	3 cut(s)	541, 551, 642
BstNSI	RCATGY	2 cut(s)	382, 457
BstSCI	CCNGG	4 cut(s)	422, 539, 549, 640
BstSFI	CTRYAG	1 cut(s)	1071
BstV1I	GCAGC	6 cut(s)	220, 307, 691, 781, 803, 887
BstV2I	GAAGAC	2 cut(s)	9, 172
BstX2I	RGATCY	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	213, 1108
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	6 cut(s)	126, 330, 469, 481, 559, 685
BveI	ACCTGC	1 cut(s)	1064
Cac8I	GCNNGC	3 cut(s)	247, 455, 763
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	157, 211
Csp6I	GTAC	2 cut(s)	60, 1021
CviAII	CATG	7 cut(s)	67, 301, 370, 379, 434, 454, 615
CviQI	GTAC	2 cut(s)	60, 1021
DdeI	CTNAG	5 cut(s)	100, 197, 852, 879, 888
DpnI	GATC	2 cut(s)	317, 421
DpnII	GATC	2 cut(s)	315, 419
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco130I	CCWWGG	5 cut(s)	66, 79, 112, 923, 1103
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	3 cut(s)	539, 549, 640
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	5 cut(s)	66, 79, 112, 923, 1103
ErhI	CCWWGG	5 cut(s)	66, 79, 112, 923, 1103
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	7 cut(s)	70, 304, 373, 382, 437, 457, 618
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	7 cut(s)	66, 300, 369, 378, 433, 453, 614
FauI	CCCGC	2 cut(s)	116, 229
Fnu4HI	GCNGC	7 cut(s)	234, 309, 321, 705, 792, 795, 876
FokI	GGATG	6 cut(s)	113, 317, 476, 488, 566, 692
Fsp4HI	GCNGC	7 cut(s)	234, 309, 321, 705, 792, 795, 876
FspBI	CTAG	1 cut(s)	806
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	7 cut(s)	234, 309, 321, 705, 792, 795, 876
GsaI	CCCAGC	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	213, 1108
HapII	CCGG	3 cut(s)	297, 424, 629
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	70, 304, 373, 382, 437, 457, 618
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	719
HpaII	CCGG	3 cut(s)	297, 424, 629
Hpy166II	GTNNAC	3 cut(s)	673, 689, 897
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	673, 689, 897
HpyAV	CCTTC	2 cut(s)	669, 814
HpyCH4III	ACNGT	1 cut(s)	696
HpyCH4IV	ACGT	1 cut(s)	1023
HpyF10VI	GCNNNNNNNGC	9 cut(s)	230, 242, 317, 375, 599, 767, 875, 881, 1048
HpyF3I	CTNAG	5 cut(s)	100, 197, 852, 879, 888
HpySE526I	ACGT	1 cut(s)	1023
Hsp92II	CATG	7 cut(s)	70, 304, 373, 382, 437, 457, 618
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	315, 419
LmnI	GCTCC	4 cut(s)	223, 544, 910, 1105
Lsp1109I	GCAGC	6 cut(s)	220, 307, 691, 781, 803, 887
LweI	GCATC	3 cut(s)	589, 691, 862
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	2 cut(s)	754, 837
MalI	GATC	2 cut(s)	317, 421
MboI	GATC	2 cut(s)	315, 419
MboII	GAAGA	3 cut(s)	9, 172, 751
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	2 cut(s)	139, 549
MluCI	AATT	7 cut(s)	151, 205, 585, 666, 710, 846, 1032
MnlI	CCTC	7 cut(s)	98, 169, 172, 644, 673, 943, 976
MroXI	GAANNNNTTC	2 cut(s)	624, 658
MseI	TTAA	7 cut(s)	24, 279, 459, 735, 1031, 1064, 1111
MslI	CAYNNNNRTG	2 cut(s)	552, 889
MspA1I	CMGCKG	2 cut(s)	337, 794
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	3 cut(s)	297, 424, 629
MspR9I	CCNGG	4 cut(s)	424, 541, 551, 642
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	3 cut(s)	541, 551, 642
MwoI	GCNNNNNNNGC	9 cut(s)	230, 242, 317, 375, 599, 767, 875, 881, 1048
NciI	CCSGG	1 cut(s)	424
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	315, 419
NlaIII	CATG	7 cut(s)	70, 304, 373, 382, 437, 457, 618
NlaIV	GGNNCC	4 cut(s)	85, 159, 421, 885
NspI	RCATGY	2 cut(s)	382, 457
OliI	CACNNNNGTG	1 cut(s)	889
PaeI	GCATGC	1 cut(s)	457
PaqCI	CACCTGC	1 cut(s)	1064
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	2 cut(s)	624, 658
PkrI	GCNGC	7 cut(s)	235, 310, 322, 706, 793, 796, 877
Psp6I	CCWGG	3 cut(s)	539, 549, 640
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	3 cut(s)	539, 549, 640
PspN4I	GGNNCC	4 cut(s)	85, 159, 421, 885
PspPI	GGNCC	2 cut(s)	157, 211
PsrI	GAACNNNNNNTAC	2 cut(s)	822, 854
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	2 cut(s)	337, 794
RsaI	GTAC	2 cut(s)	61, 1022
RsaNI	GTAC	2 cut(s)	60, 1021
RseI	CAYNNNNRTG	2 cut(s)	552, 889
SaqAI	TTAA	7 cut(s)	24, 279, 459, 735, 1031, 1064, 1111
SatI	GCNGC	7 cut(s)	234, 309, 321, 705, 792, 795, 876
Sau3AI	GATC	2 cut(s)	315, 419
Sau96I	GGNCC	2 cut(s)	157, 211
ScrFI	CCNGG	4 cut(s)	424, 541, 551, 642
SduI	GDGCHC	2 cut(s)	139, 549
SfaNI	GCATC	3 cut(s)	589, 691, 862
SfcI	CTRYAG	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	552, 889
SmlI	CTYRAG	2 cut(s)	140, 458
SmoI	CTYRAG	2 cut(s)	140, 458
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	7 cut(s)	151, 205, 585, 666, 710, 846, 1032
SsiI	CCGC	4 cut(s)	72, 109, 222, 309
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	806
StyD4I	CCNGG	4 cut(s)	422, 539, 549, 640
StyI	CCWWGG	5 cut(s)	66, 79, 112, 923, 1103
TaaI	ACNGT	1 cut(s)	696
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	1 cut(s)	724
TasI	AATT	7 cut(s)	151, 205, 585, 666, 710, 846, 1032
TauI	GCSGC	1 cut(s)	311
Tru1I	TTAA	7 cut(s)	24, 279, 459, 735, 1031, 1064, 1111
Tru9I	TTAA	7 cut(s)	24, 279, 459, 735, 1031, 1064, 1111
TseI	GCWGC	6 cut(s)	233, 320, 704, 791, 794, 875
TspDTI	ATGAA	2 cut(s)	317, 987
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	151, 585
XceI	RCATGY	2 cut(s)	382, 457
XmnI	GAANNNNTTC	2 cut(s)	624, 658
XspI	CTAG	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.