Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8394755.1

Orthogroup ID

OG0015847

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 958

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8394755.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 419 bp

ccgctatgatcgctgcacaaaccatccagctgggtcataatgatatcgttgttgctggtggcatggaaagcatgtccaatgcccccaagtatctaccaaatgccagacagggatcccggttaggacatgataatattgttgatggcatgcttaaggatggtttgtgggatgtctataatgactttggaatgggagtttgtgcagaaatatgtgctgacaaatactccatatccagggaacaccaggatggttatgctattcaaagttttgagcgtggaatttctgcacaagatgctggtctctttgcatgggaaatagttccggttgaagttcctgggggacgaggaaagccttcctcaattgttgacaaggatgatggtttacaacaggtaagtatgatagatgggcttggtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Gp_dh_C Thiolase_C Thiolase_N

Protein Analysis

138

Amino Acids

14.77

Weight (kDa)

4.52

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47720
fragaria_vesca	FvH4_3g00290
malus_domestica	MD10G1339600.v1.1
prunus_persica	Prupe.4G003300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000431
rosa_laevigata	RLG00000030866
rosa_multiflora	Rmu_co8394755.1_g000001 Rmu_sc0003949.1_g000003 Rmu_ssc0000385.1_g000015
rosa_roxburghii	Rroxscaffold_1G00075730
rosa_rugosa	Rorug04G0383500 Rorug04G0383500
rosa_samantha	Rh5AG003500 Rh5CG003700
rosa_wichuraiana	Rw5G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	2
AclWI	GGATC	2 cut(s)	107, 120
AcsI	RAATTY	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	262, 328
AjnI	CCWGG	3 cut(s)	232, 242, 333
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	107, 120
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	2 cut(s)	317, 351
AsuC2I	CCSGG	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	112
BccI	CCATC	6 cut(s)	31, 136, 151, 241, 370, 397
BciT130I	CCWGG	3 cut(s)	234, 244, 335
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	304
BfrI	CTTAAG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	4 cut(s)	117, 234, 244, 335
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	4 cut(s)	117, 234, 244, 335
BmsI	GCATC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	233, 334
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseBI	CCWGG	3 cut(s)	234, 244, 335
BseDI	CCNNGG	2 cut(s)	233, 334
BseGI	GGATG	5 cut(s)	23, 162, 174, 252, 378
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	30
BsgI	GTGCAG	2 cut(s)	221, 269
BsiSI	CCGG	2 cut(s)	117, 322
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	353
Bso31I	GGTCTC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	8, 112
BspACI	CCGC	1 cut(s)	2
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	107, 120
BspTI	CTTAAG	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	233, 334
BssMI	GATC	2 cut(s)	8, 112
Bst2UI	CCWGG	3 cut(s)	234, 244, 335
BstAFI	CTTAAG	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	148
BstF5I	GGATG	5 cut(s)	23, 162, 174, 252, 378
BstKTI	GATC	2 cut(s)	11, 115
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	2 cut(s)	8, 112
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 68, 292
BstNI	CCWGG	3 cut(s)	234, 244, 335
BstNSI	RCATGY	2 cut(s)	75, 150
BstSCI	CCNGG	4 cut(s)	115, 232, 242, 333
BstX2I	RGATCY	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	112
BtsCI	GGATG	5 cut(s)	23, 162, 174, 252, 378
Cac8I	GCNNGC	1 cut(s)	148
CviAII	CATG	5 cut(s)	63, 72, 127, 147, 308
CviJI	RGCY	3 cut(s)	30, 351, 408
CviKI_1	RGCY	3 cut(s)	30, 351, 408
DpnI	GATC	2 cut(s)	10, 114
DpnII	GATC	2 cut(s)	8, 112
Eco31I	GGTCTC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	45
EcoRII	CCWGG	3 cut(s)	232, 242, 333
EcoRV	GATATC	1 cut(s)	45
FaeI	CATG	5 cut(s)	66, 75, 130, 150, 311
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	5 cut(s)	62, 71, 126, 146, 307
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	5 cut(s)	10, 169, 181, 259, 385
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	34
HapII	CCGG	2 cut(s)	117, 322
Hin1II	CATG	5 cut(s)	66, 75, 130, 150, 311
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HpaII	CCGG	2 cut(s)	117, 322
Hpy166II	GTNNAC	2 cut(s)	366, 382
Hpy8I	GTNNAC	2 cut(s)	366, 382
HpyAV	CCTTC	1 cut(s)	362
HpyCH4V	TGCA	4 cut(s)	16, 202, 286, 307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 68, 292
Hsp92II	CATG	5 cut(s)	66, 75, 130, 150, 311
Kzo9I	GATC	2 cut(s)	8, 112
LweI	GCATC	1 cut(s)	282
MalI	GATC	2 cut(s)	10, 114
MboI	GATC	2 cut(s)	8, 112
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	3 cut(s)	278, 359, 414
MnlI	CCTC	2 cut(s)	337, 366
MroXI	GAANNNNTTC	2 cut(s)	317, 351
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	30
MspCI	CTTAAG	1 cut(s)	151
MspI	CCGG	2 cut(s)	117, 322
MspR9I	CCNGG	4 cut(s)	117, 234, 244, 335
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	3 cut(s)	234, 244, 335
MwoI	GCNNNNNNNGC	3 cut(s)	10, 68, 292
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	8, 112
NlaIII	CATG	5 cut(s)	66, 75, 130, 150, 311
NlaIV	GGNNCC	1 cut(s)	114
NspI	RCATGY	2 cut(s)	75, 150
PaeI	GCATGC	1 cut(s)	150
PdmI	GAANNNNTTC	2 cut(s)	317, 351
PkrI	GCNGC	1 cut(s)	15
Psp6I	CCWGG	3 cut(s)	232, 242, 333
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	3 cut(s)	232, 242, 333
PspN4I	GGNNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	8, 112
ScrFI	CCNGG	4 cut(s)	117, 234, 244, 335
SetI	ASST	2 cut(s)	32, 392
SfaNI	GCATC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	3 cut(s)	278, 359, 414
SsiI	CCGC	1 cut(s)	2
SspI	AATATT	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	115, 232, 242, 333
TasI	AATT	3 cut(s)	278, 359, 414
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	1 cut(s)	13
Vha464I	CTTAAG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	2 cut(s)	75, 150
XmnI	GAANNNNTTC	2 cut(s)	317, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.