MD11G1019900.v1.1

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0019787
Physical Location & Seq
Reverse (-)
1710030 .. 1712937
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1019900.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGAAAGGGTAGTGGTAAGGAAAGATGAGAGAATTATGACAAGGCTGGCAGATGAGTTCGAACAACTGGCCGCTCAGCTGAACTCTCCGGCACCGATCACCATGGAAATTGGCAAGTTCACCCAAGCCTGTCGTCTCGTTTCTCCTCTCATTCGACACCTAGGCGTCGCTTCGAAGTTCGCCGACATAGAGTACTCTGCTAAGGTTAGTGTGATTGAAAAGGCAGGAAAGTCAGTTAATACCCTAGAAGATTCGCTTGACCGTGAAATACAACAGAATACCTTTAAGCCCCATAATAGTGCTTCGAGATCCCTCATCAGAGTGAGGCGTTCACTTGAGATGCTTAAGATAATATTCGAGCAAACTATGGCCTCAAGCGAAAAATCAATCATGGATCCGGTTAAAACAGCATATAACCAAGTTTTGTACCCCTACCACGGATGGGCTCTCAGAAAGACTTTTGTGGGTGCACTGCACACCCTTCCTACAAAGTCACTGTTCTTCAAAAGGGTAAAATTAGATGAAGCATCGGCTTTTGTTCAGATGCAAAGGACAGTTACTGCATTAGCTCCTCTGATACACTACATCGACAACTTATTCCATTCAAGGGAGTCAACTCAAGAGCTGCTACGCTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

214

Amino Acids

24.35

Weight (kDa)

9.57

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 36 - 171 5.1e-30 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019787)

Species Orthologous Gene IDs
malus_domestica MD11G1019900.v1.1 MD11G1020300.v1.1 MD11G1020400.v1.1 MD11G1020600.v1.1 MD11G1073600.v1.1
pyrus_communis pycom11g01480 pycom11g01630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 1 cut(s) 72
AclWI GGATC 3 cut(s) 303, 389, 402
AcoI YGGCCR 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 194, 428
AfiI CCNNNNNNNGG 3 cut(s) 437, 442, 607
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 3 cut(s) 218, 505, 606
AluBI AGCT 3 cut(s) 79, 569, 625
AluI AGCT 3 cut(s) 79, 569, 625
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 468
AlwI GGATC 3 cut(s) 303, 389, 402
AlwNI CAGNNNCTG 1 cut(s) 560
AoxI GGCC 2 cut(s) 69, 369
ApaLI GTGCAC 1 cut(s) 468
ApeKI GCWGC 1 cut(s) 625
AspA2I CCTAGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 91, 112
AsuII TTCGAA 2 cut(s) 60, 173
AvrII CCTAGG 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 472
BamHI GGATCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 1 cut(s) 612
BccI CCATC 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 161, 245
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 2 cut(s) 72, 626
BlnI CCTAGG 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 2 cut(s) 73, 627
BmcAI AGTACT 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 93, 396
BmsI GCATC 3 cut(s) 330, 534, 536
Bpu10I CCTNAGC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 2 cut(s) 60, 173
BpuEI CTTGAG 3 cut(s) 356, 358, 603
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 102, 160, 436
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 442, 607
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 3 cut(s) 102, 160, 436
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 437, 442, 607
BseMII CTCAG 2 cut(s) 89, 463
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 135, 561
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 1 cut(s) 612
BsgI GTGCAG 1 cut(s) 458
BshFI GGCC 2 cut(s) 71, 371
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 472
BsiSI CCGG 2 cut(s) 89, 398
BslI CCNNNNNNNGG 3 cut(s) 437, 442, 607
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsnI GGCC 2 cut(s) 71, 371
Bsp119I TTCGAA 2 cut(s) 60, 173
Bsp1286I GDGCHC 2 cut(s) 448, 472
Bsp143I GATC 3 cut(s) 96, 308, 394
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 1 cut(s) 72
BspANI GGCC 2 cut(s) 71, 371
BspCNI CTCAG 2 cut(s) 88, 462
BspLI GGNNCC 2 cut(s) 93, 396
BspPI GGATC 3 cut(s) 303, 389, 402
BspT104I TTCGAA 2 cut(s) 60, 173
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 102, 160, 436
BssMI GATC 3 cut(s) 96, 308, 394
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 102, 160
Bst4CI ACNGT 3 cut(s) 263, 498, 556
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 344
BstBI TTCGAA 2 cut(s) 60, 173
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 75, 201, 449
BstDSI CCRYGG 2 cut(s) 102, 436
BstF5I GGATG 1 cut(s) 446
BstKTI GATC 3 cut(s) 99, 311, 397
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 3 cut(s) 96, 308, 394
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 612
BstX2I RGATCY 2 cut(s) 308, 394
BstYI RGATCY 2 cut(s) 308, 394
BsuRI GGCC 2 cut(s) 71, 371
BtgI CCRYGG 2 cut(s) 102, 436
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 470, 494
Cac8I GCNNGC 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 560
CseI GACGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 193, 427
CviAII CATG 2 cut(s) 103, 391
CviQI GTAC 2 cut(s) 193, 427
DdeI CTNAG 3 cut(s) 75, 201, 449
DpnI GATC 3 cut(s) 98, 310, 396
DpnII GATC 3 cut(s) 96, 308, 394
EaeI YGGCCR 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 102, 160
Eco24I GRGCYC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 102, 160
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 2 cut(s) 102, 160
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 106, 394
FaiI YATR 8 cut(s) 38, 104, 188, 294, 368, 392, 412, 414
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 2 cut(s) 102, 390
Fnu4HI GCNGC 2 cut(s) 72, 626
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 72, 626
FspBI CTAG 2 cut(s) 161, 245
GluI GCNGC 2 cut(s) 72, 626
HaeIII GGCC 2 cut(s) 71, 371
HapII CCGG 2 cut(s) 89, 398
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 2 cut(s) 106, 394
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 2 cut(s) 251, 611
HpaII CCGG 2 cut(s) 89, 398
HphI GGTGA 2 cut(s) 91, 112
Hpy166II GTNNAC 4 cut(s) 120, 332, 470, 615
Hpy188I TCNGA 4 cut(s) 320, 452, 543, 576
Hpy188III TCNNGA 2 cut(s) 306, 620
Hpy8I GTNNAC 4 cut(s) 120, 332, 470, 615
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 3 cut(s) 263, 498, 556
HpyCH4V TGCA 4 cut(s) 470, 475, 547, 563
HpyF3I CTNAG 3 cut(s) 75, 201, 449
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 2 cut(s) 106, 394
Kzo9I GATC 3 cut(s) 96, 308, 394
LmnI GCTCC 1 cut(s) 574
LpnPI CCDG 6 cut(s) 32, 53, 102, 142, 210, 411
Lsp1109I GCAGC 1 cut(s) 612
LweI GCATC 3 cut(s) 330, 534, 536
MaeI CTAG 2 cut(s) 161, 245
MaeIII GTNAC 2 cut(s) 492, 556
MalI GATC 3 cut(s) 98, 310, 396
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 96, 308, 394
MboII GAAGA 2 cut(s) 260, 493
MflI RGATCY 2 cut(s) 308, 394
MhlI GDGCHC 2 cut(s) 448, 472
MluCI AATT 3 cut(s) 33, 108, 515
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 5 cut(s) 156, 318, 323, 382, 582
MseI TTAA 4 cut(s) 237, 285, 345, 402
MslI CAYNNNNRTG 2 cut(s) 297, 320
MspA1I CMGCKG 1 cut(s) 79
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 2 cut(s) 89, 398
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 96, 308, 394
NlaIII CATG 2 cut(s) 106, 394
NlaIV GGNNCC 2 cut(s) 93, 396
NmuCI GTSAC 1 cut(s) 492
NspV TTCGAA 2 cut(s) 60, 173
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 2 cut(s) 73, 627
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 93, 396
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 2 cut(s) 308, 394
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 2 cut(s) 194, 428
RsaNI GTAC 2 cut(s) 193, 427
RseI CAYNNNNRTG 2 cut(s) 297, 320
SaqAI TTAA 4 cut(s) 237, 285, 345, 402
SatI GCNGC 2 cut(s) 72, 626
Sau3AI GATC 3 cut(s) 96, 308, 394
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 620
SduI GDGCHC 2 cut(s) 448, 472
SetI ASST 6 cut(s) 81, 162, 207, 284, 571, 627
SfaNI GCATC 3 cut(s) 330, 534, 536
SfuI TTCGAA 2 cut(s) 60, 173
SmiMI CAYNNNNRTG 2 cut(s) 297, 320
SmlI CTYRAG 4 cut(s) 335, 344, 373, 618
SmoI CTYRAG 4 cut(s) 335, 344, 373, 618
Sse9I AATT 3 cut(s) 33, 108, 515
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 354
SspMI CTAG 2 cut(s) 161, 245
StyI CCWWGG 2 cut(s) 102, 160
TaaI ACNGT 3 cut(s) 263, 498, 556
TaqI TCGA 6 cut(s) 60, 154, 173, 305, 357, 588
TasI AATT 3 cut(s) 33, 108, 515
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 4 cut(s) 237, 285, 345, 402
Tru9I TTAA 4 cut(s) 237, 285, 345, 402
TscAI CASTG 2 cut(s) 477, 501
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 1 cut(s) 625
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 1 cut(s) 537
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 2 cut(s) 477, 501
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 468
XmaJI CCTAGG 1 cut(s) 160
XspI CTAG 2 cut(s) 161, 245
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.