pycom11g01630

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0019787
Physical Location & Seq
Reverse (-)
1416170 .. 1418312
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g01630.2

Sequence Viewer

Length: 660 bp
ATGGTGAACAAAAATTATAGAATGGCAAGGGTAGTGGGAAGGAAAGATGAGAGAATTCTGACAAGGCTGGCAGATGAATTTGAACAACTGGGCGCTCAGCTGAATTCTCCGGTACCAACCATGGAAATTGACAAGTTCACTCAATCCTGCCATCTCGTTTCTCCTCTCATTCGACACTTAGGCGTCGCTATGAAGTTCGCCGACATCGAGTACTCTGCTAAGGTTAGTGGGGTTGTAAAGGCAGGAAAGTCAGTTAATACTCTAGAAGACTTGCTTGACCATGACATACAGAAGAATACCATTAAGCACTTTAGTAGTAGCTCGAGAATGCTCATCAGAGTGAAGCGTTCACTTGAGATGCTTAAGATAATATTCGAGAAAATTATGGCCTCAAGCGAAAATACTCTCATGGATCCGGTTAACACAGCATATAAACAAGTTTTTTACCCCTACTACGGATGGGCTAGTAGAAAGACTGTTGCGGGTGCACTGCAAAACCTTCCTACAAAGTCACTGTTCTTCAAAAGGCTAAAAGTAGATGAGGTATCGGCTTTTGTTCAGATGCAAAGGACAGTTACTGCGTTGGATCCTCTGATACACTACATTGATAACTTATTCCATTCAAGGGAGTCAGTTCAAGAGCTGCTACGCTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

220

Amino Acids

25.11

Weight (kDa)

9.54

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019787)

Species Orthologous Gene IDs
malus_domestica MD11G1019900.v1.1 MD11G1020300.v1.1 MD11G1020400.v1.1 MD11G1020600.v1.1 MD11G1073600.v1.1
pyrus_communis pycom11g01480 pycom11g01630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 112
AciI CCGC 1 cut(s) 482
AclWI GGATC 4 cut(s) 407, 420, 581, 594
AcsI RAATTY 3 cut(s) 54, 77, 103
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 114, 212
AfiI CCNNNNNNNGG 2 cut(s) 455, 625
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 4 cut(s) 83, 523, 624, 638
AluBI AGCT 3 cut(s) 100, 321, 643
AluI AGCT 3 cut(s) 100, 321, 643
Alw21I GWGCWC 1 cut(s) 490
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 4 cut(s) 407, 420, 581, 594
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 387
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 643
ApoI RAATTY 3 cut(s) 54, 77, 103
Asp718I GGTACC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 490
BamHI GGATCC 2 cut(s) 412, 586
BanI GGYRCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 159, 453
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BfaI CTAG 2 cut(s) 263, 465
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 362
BisI GCNGC 1 cut(s) 644
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 645
BmcAI AGTACT 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 322
BmiI GGNNCC 3 cut(s) 114, 414, 588
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 348, 552
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 374, 376
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 2 cut(s) 109, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 625
Bse1I ACTGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 2 cut(s) 455, 625
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 1 cut(s) 630
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 110, 416
BslI CCNNNNNNNGG 2 cut(s) 455, 625
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 2 cut(s) 412, 586
Bsp1720I GCTNAGC 1 cut(s) 96
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 1 cut(s) 482
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 114, 414, 588
BspPI GGATC 4 cut(s) 407, 420, 581, 594
BspT107I GGYRCC 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 362
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 412, 586
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 478, 516, 574
BstACI GRCGYC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 69, 653
BstDEI CTNAG 3 cut(s) 96, 178, 219
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 2 cut(s) 415, 589
BstMBI GATC 2 cut(s) 412, 586
BstMWI GCNNNNNNNGC 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 1 cut(s) 630
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 412, 586
BstYI RGATCY 2 cut(s) 412, 586
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 464
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 2 cut(s) 488, 512
Cac8I GCNNGC 2 cut(s) 69, 653
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 1 cut(s) 95
CseI GACGC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 113, 211
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 3 cut(s) 121, 281, 409
CviJI RGCY 8 cut(s) 67, 100, 321, 389, 464, 529, 551, 643
CviKI_1 RGCY 8 cut(s) 67, 100, 321, 389, 464, 529, 551, 643
CviQI GTAC 2 cut(s) 113, 211
DdeI CTNAG 3 cut(s) 96, 178, 219
DpnI GATC 2 cut(s) 414, 588
DpnII GATC 2 cut(s) 412, 586
Eco130I CCWWGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 322
EcoRI GAATTC 2 cut(s) 54, 103
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 3 cut(s) 124, 284, 412
FaiI YATR 9 cut(s) 18, 122, 191, 282, 287, 386, 410, 430, 432
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 3 cut(s) 120, 280, 408
FauI CCCGC 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 644
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 644
FspBI CTAG 2 cut(s) 263, 465
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 644
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 389
HapII CCGG 2 cut(s) 110, 416
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 124, 284, 412
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 1 cut(s) 629
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 2 cut(s) 110, 416
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 5 cut(s) 7, 138, 350, 421, 488
Hpy188I TCNGA 4 cut(s) 60, 338, 561, 594
Hpy188III TCNNGA 4 cut(s) 263, 324, 376, 638
Hpy8I GTNNAC 5 cut(s) 7, 138, 350, 421, 488
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 33, 509
HpyCH4III ACNGT 3 cut(s) 478, 516, 574
HpyCH4V TGCA 3 cut(s) 488, 493, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 652
HpyF3I CTNAG 3 cut(s) 96, 178, 219
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 124, 284, 412
HspAI GCGC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 116
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 2 cut(s) 412, 586
LpnPI CCDG 6 cut(s) 53, 74, 123, 160, 228, 429
Lsp1109I GCAGC 1 cut(s) 630
LweI GCATC 2 cut(s) 348, 552
MaeI CTAG 2 cut(s) 263, 465
MaeIII GTNAC 2 cut(s) 510, 574
MalI GATC 2 cut(s) 414, 588
MboI GATC 2 cut(s) 412, 586
MboII GAAGA 3 cut(s) 278, 304, 511
MflI RGATCY 2 cut(s) 412, 586
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 6 cut(s) 13, 54, 77, 103, 126, 381
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 4 cut(s) 174, 400, 535, 600
MseI TTAA 4 cut(s) 255, 303, 363, 420
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 100
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 2 cut(s) 110, 416
Mva1269I GAATGC 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 652
NcoI CCATGG 1 cut(s) 120
NdeII GATC 2 cut(s) 412, 586
NlaIII CATG 3 cut(s) 124, 284, 412
NlaIV GGNNCC 3 cut(s) 114, 414, 588
NmuCI GTSAC 1 cut(s) 510
PaeR7I CTCGAG 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 1 cut(s) 333
PkrI GCNGC 1 cut(s) 645
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PspN4I GGNNCC 3 cut(s) 114, 414, 588
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 2 cut(s) 412, 586
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 2 cut(s) 114, 212
RsaNI GTAC 2 cut(s) 113, 211
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 4 cut(s) 255, 303, 363, 420
SatI GCNGC 1 cut(s) 644
Sau3AI GATC 2 cut(s) 412, 586
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 638
SduI GDGCHC 1 cut(s) 490
SetI ASST 6 cut(s) 102, 225, 323, 501, 546, 645
SfaNI GCATC 2 cut(s) 348, 552
Sfr274I CTCGAG 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 4 cut(s) 322, 353, 362, 391
SmoI CTYRAG 4 cut(s) 322, 353, 362, 391
Sse9I AATT 6 cut(s) 13, 54, 77, 103, 126, 381
SsiI CCGC 1 cut(s) 482
SspI AATATT 1 cut(s) 372
SspMI CTAG 2 cut(s) 263, 465
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 3 cut(s) 478, 516, 574
TaqI TCGA 4 cut(s) 172, 207, 323, 375
TasI AATT 6 cut(s) 13, 54, 77, 103, 126, 381
TatI WGTACW 1 cut(s) 210
Tru1I TTAA 4 cut(s) 255, 303, 363, 420
Tru9I TTAA 4 cut(s) 255, 303, 363, 420
TscAI CASTG 2 cut(s) 495, 519
TseFI GTSAC 1 cut(s) 510
TseI GCWGC 1 cut(s) 643
Tsp45I GTSAC 1 cut(s) 510
TspDTI ATGAA 2 cut(s) 90, 206
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 2 cut(s) 495, 519
Vha464I CTTAAG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 486
XapI RAATTY 3 cut(s) 54, 77, 103
XbaI TCTAGA 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 322
XspI CTAG 2 cut(s) 263, 465
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.