MD11G1020600.v1.1

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0019787
Physical Location & Seq
Reverse (-)
1795031 .. 1797529
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1020600.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGCAAGGGTAGTGGGAAGGAAAGATGAGAAAATTCTGACAAGGCTGGCAGATGAATTCGAACAACTGGCCGCTCAGCTGAATTCTCCGGTACCAACCATGGAAATTGACAAGTTCACTCAATCCTGTCGTCTCGTTTCTCCTCTCATTCGACACTTGGGCGTCGCTATGAAGTTCGCCGACATCGAGTACTCTGCTAAGGTTAGTGCGGTGTTAAAGGCAGGAAAGTCAGTTAATACCCTAGAAGATTTGCTTGACAGTGACATACAGAAGAATACTATTAAGCAGTTTAGTAGTAGCTCGAGAATGCTCATCAGAGTGAAGCGCTCGCTTGAGCTGCTTAAGATAATATTCGAGAAAATTATGGCCTCAAGCGAAAATACTCTCATGGATCCGGTTAACACAGCATATAAACAAGTTTTTTACCCCTACTACGGATGGGCTAGTAGAAAGACTGTTGCGGGTGCACTGCAAAACCTTCCTACAAAGTCACTGTTCTTCAAAAGGCTAAAAGTAGATGAGGCATCGGCTTTTGTTCAGATGCAAAGGACAGTTACTGCATTGGATCCTCTGATACACTACATTGACAACTTATTCCATTCAAGGGAGTCAGTTCAAGAGCTACTATGCTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

213

Amino Acids

24.08

Weight (kDa)

9.28

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 35 - 171 1.4e-27 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019787)

Species Orthologous Gene IDs
malus_domestica MD11G1019900.v1.1 MD11G1020300.v1.1 MD11G1020400.v1.1 MD11G1020600.v1.1 MD11G1073600.v1.1
pyrus_communis pycom11g01480 pycom11g01630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 3 cut(s) 72, 209, 461
AclWI GGATC 4 cut(s) 386, 399, 560, 573
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 3 cut(s) 33, 56, 82
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 93, 191
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 434, 604
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 3 cut(s) 502, 603, 617
AluBI AGCT 4 cut(s) 79, 300, 337, 622
AluI AGCT 4 cut(s) 79, 300, 337, 622
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 1 cut(s) 137
Alw44I GTGCAC 1 cut(s) 465
AlwI GGATC 4 cut(s) 386, 399, 560, 573
AlwNI CAGNNNCTG 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 301
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 2 cut(s) 69, 366
ApaLI GTGCAC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 3 cut(s) 33, 56, 82
Asp718I GGTACC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 327
AsuII TTCGAA 1 cut(s) 60
AvaI CYCGRG 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 469
BamHI GGATCC 2 cut(s) 391, 565
BanI GGYRCC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 432
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 242, 444
BfoI RGCGCY 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 341
BisI GCNGC 2 cut(s) 72, 338
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 2 cut(s) 73, 339
BmcAI AGTACT 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 301
BmiI GGNNCC 3 cut(s) 93, 393, 567
BmsI GCATC 2 cut(s) 531, 533
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 353, 355
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 2 cut(s) 88, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 604
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 434, 604
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 1 cut(s) 324
BshFI GGCC 2 cut(s) 71, 368
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 2 cut(s) 89, 395
BslI CCNNNNNNNGG 2 cut(s) 434, 604
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 312
BsnI GGCC 2 cut(s) 71, 368
BsoBI CYCGRG 1 cut(s) 301
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 2 cut(s) 391, 565
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 3 cut(s) 72, 209, 461
BspANI GGCC 2 cut(s) 71, 368
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 93, 393, 567
BspPI GGATC 4 cut(s) 386, 399, 560, 573
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 391, 565
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 4 cut(s) 260, 457, 495, 553
BstACI GRCGYC 1 cut(s) 162
BstAFI CTTAAG 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 48, 329, 632
BstDEI CTNAG 2 cut(s) 75, 198
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 443
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 394, 568
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 391, 565
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 391, 565
BstYI RGATCY 2 cut(s) 391, 565
BsuRI GGCC 2 cut(s) 71, 368
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 3 cut(s) 265, 467, 491
Cac8I GCNNGC 3 cut(s) 48, 329, 632
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 1 cut(s) 327
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 92, 190
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 2 cut(s) 100, 388
CviQI GTAC 2 cut(s) 92, 190
DdeI CTNAG 2 cut(s) 75, 198
DpnI GATC 2 cut(s) 393, 567
DpnII GATC 2 cut(s) 391, 565
EaeI YGGCCR 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 99
Eco47III AGCGCT 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 301
EcoRI GAATTC 2 cut(s) 56, 82
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 2 cut(s) 103, 391
FaiI YATR 8 cut(s) 101, 170, 266, 365, 389, 409, 411, 628
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 2 cut(s) 99, 387
FauI CCCGC 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 72, 338
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 72, 338
FspBI CTAG 2 cut(s) 242, 444
GlaI GCGC 1 cut(s) 326
GluI GCNGC 2 cut(s) 72, 338
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 2 cut(s) 71, 368
HapII CCGG 2 cut(s) 89, 395
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 103, 391
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 1 cut(s) 608
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 2 cut(s) 89, 395
Hpy166II GTNNAC 3 cut(s) 117, 400, 467
Hpy188I TCNGA 4 cut(s) 39, 317, 540, 573
Hpy188III TCNNGA 3 cut(s) 303, 355, 617
Hpy8I GTNNAC 3 cut(s) 117, 400, 467
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 12, 488
HpyCH4III ACNGT 4 cut(s) 260, 457, 495, 553
HpyCH4V TGCA 4 cut(s) 467, 472, 544, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 2 cut(s) 75, 198
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 103, 391
HspAI GCGC 1 cut(s) 325
KpnI GGTACC 1 cut(s) 95
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 2 cut(s) 391, 565
LpnPI CCDG 6 cut(s) 32, 53, 102, 139, 207, 408
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 2 cut(s) 531, 533
MaeI CTAG 2 cut(s) 242, 444
MaeIII GTNAC 3 cut(s) 260, 489, 553
MalI GATC 2 cut(s) 393, 567
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 391, 565
MboII GAAGA 3 cut(s) 257, 283, 490
MflI RGATCY 2 cut(s) 391, 565
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 5 cut(s) 33, 56, 82, 105, 360
MlyI GAGTC 1 cut(s) 617
MnlI CCTC 4 cut(s) 153, 379, 514, 579
MseI TTAA 5 cut(s) 215, 234, 282, 342, 399
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 79
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 2 cut(s) 89, 395
Mva1269I GAATGC 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 337
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 391, 565
NlaIII CATG 2 cut(s) 103, 391
NlaIV GGNNCC 3 cut(s) 93, 393, 567
NmuCI GTSAC 2 cut(s) 260, 489
NspV TTCGAA 1 cut(s) 60
PaeR7I CTCGAG 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 312
PkrI GCNGC 2 cut(s) 73, 339
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
PspN4I GGNNCC 3 cut(s) 93, 393, 567
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 2 cut(s) 391, 565
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 2 cut(s) 93, 191
RsaNI GTAC 2 cut(s) 92, 190
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 5 cut(s) 215, 234, 282, 342, 399
SatI GCNGC 2 cut(s) 72, 338
Sau3AI GATC 2 cut(s) 391, 565
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 617
SduI GDGCHC 1 cut(s) 469
SetI ASST 6 cut(s) 81, 204, 302, 339, 480, 624
SfaNI GCATC 2 cut(s) 531, 533
Sfr274I CTCGAG 1 cut(s) 301
SfuI TTCGAA 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 4 cut(s) 301, 332, 341, 370
SmoI CTYRAG 4 cut(s) 301, 332, 341, 370
Sse9I AATT 5 cut(s) 33, 56, 82, 105, 360
SsiI CCGC 3 cut(s) 72, 209, 461
SspI AATATT 1 cut(s) 351
SspMI CTAG 2 cut(s) 242, 444
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 4 cut(s) 260, 457, 495, 553
TaqI TCGA 5 cut(s) 60, 151, 186, 302, 354
TasI AATT 5 cut(s) 33, 56, 82, 105, 360
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 5 cut(s) 215, 234, 282, 342, 399
Tru9I TTAA 5 cut(s) 215, 234, 282, 342, 399
TscAI CASTG 3 cut(s) 265, 474, 498
TseFI GTSAC 2 cut(s) 260, 489
TseI GCWGC 1 cut(s) 337
Tsp45I GTSAC 2 cut(s) 260, 489
TspDTI ATGAA 2 cut(s) 69, 185
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 3 cut(s) 265, 474, 498
Vha464I CTTAAG 1 cut(s) 341
VneI GTGCAC 1 cut(s) 465
XapI RAATTY 3 cut(s) 33, 56, 82
XhoI CTCGAG 1 cut(s) 301
XspI CTAG 2 cut(s) 242, 444
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.