MD11G1020300.v1.1

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0019787
Physical Location & Seq
Reverse (-)
1755096 .. 1758009
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1020300.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGCAAGGGTAGTGATAAGGAAAGATGAGAGAATTCTGACAAGGATGGCAGATGAGTTCGAACAACTGGCCGCTCATCTGAACTCTCCGGCACCGATCACCATGGAAATTGGCAAGTTCACCCAAGCATGTCGTCTCGTTTCTCCTCTCATTCGACACTTAGGCGTCGCTATGAAGTTCGCCGACATAGAGTACTCTGATAAGGTTAGTGGGATTGAAAAGGCAGGAAAGTCAGTTAATACCCTAGAAGATTTGCTTGACCGTGAAATACAACAGAATACCATTAAGCGCCACAGTAGTGGTTCGAGAATTCTCATCAGAGTGAAGCGTTCACTTGAGATGCTTAAGATAATATTCGAGCAAACTATGGCCTCAAGCGGATATTCAATCATGGATCCGGTTAACACAGCATATAAACAAGTTTTTTACCCCTACCACGGATGGGCTACCAGAAAGGCTGTTGCGGGTGCACTGCACACTCTTCCTACAAAGTCACTGTTCTTGAAAAGGCTAAAATTAGATGAGGCTTCGGCTTTTGTTCTGATGCAAAGGACAGTTATTGCATTGGATCCTCTGATACGCTACATGGACAATTTATTTCATTCAAGGGAGTCAGCTCAAGAGTTGCTACGCTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

214

Amino Acids

24.28

Weight (kDa)

9.64

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 36 - 172 2.7e-31 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019787)

Species Orthologous Gene IDs
malus_domestica MD11G1019900.v1.1 MD11G1020300.v1.1 MD11G1020400.v1.1 MD11G1020600.v1.1 MD11G1073600.v1.1
pyrus_communis pycom11g01480 pycom11g01630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 3 cut(s) 72, 378, 464
AclWI GGATC 4 cut(s) 389, 402, 563, 576
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 33, 309
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 437, 442
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 4 cut(s) 218, 387, 505, 606
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 1 cut(s) 617
AluI AGCT 1 cut(s) 617
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 468
AlwI GGATC 4 cut(s) 389, 402, 563, 576
AoxI GGCC 2 cut(s) 69, 369
ApaLI GTGCAC 1 cut(s) 468
ApoI RAATTY 2 cut(s) 33, 309
AspLEI GCGC 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 91, 112
AsuII TTCGAA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 472
BamHI GGATCC 2 cut(s) 394, 568
BanI GGYRCC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 472
BccI CCATC 2 cut(s) 40, 435
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 245
BfoI RGCGCY 1 cut(s) 292
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmcAI AGTACT 1 cut(s) 194
BmiI GGNNCC 3 cut(s) 93, 396, 570
BmsI GCATC 2 cut(s) 330, 534
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 3 cut(s) 356, 358, 603
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 102, 436
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 442
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 102, 436
BseGI GGATG 2 cut(s) 51, 446
BseLI CCNNNNNNNGG 2 cut(s) 437, 442
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 458
BshFI GGCC 2 cut(s) 71, 371
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 472
BsiSI CCGG 2 cut(s) 89, 398
BslI CCNNNNNNNGG 2 cut(s) 437, 442
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsnI GGCC 2 cut(s) 71, 371
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 3 cut(s) 96, 394, 568
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 3 cut(s) 72, 378, 464
BspANI GGCC 2 cut(s) 71, 371
BspLI GGNNCC 3 cut(s) 93, 396, 570
BspPI GGATC 4 cut(s) 389, 402, 563, 576
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 102, 436
BssMI GATC 3 cut(s) 96, 394, 568
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 4 cut(s) 263, 296, 498, 556
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 2 cut(s) 102, 436
BstF5I GGATG 2 cut(s) 51, 446
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 3 cut(s) 99, 397, 571
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 3 cut(s) 96, 394, 568
BstNSI RCATGY 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 472
BstX2I RGATCY 2 cut(s) 394, 568
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 2 cut(s) 394, 568
BsuRI GGCC 2 cut(s) 71, 371
BtgI CCRYGG 2 cut(s) 102, 436
BtsCI GGATG 2 cut(s) 51, 446
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 470, 494
CfoI GCGC 1 cut(s) 291
CseI GACGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 193
CviAII CATG 4 cut(s) 103, 129, 391, 586
CviJI RGCY 8 cut(s) 71, 371, 446, 458, 511, 527, 533, 617
CviKI_1 RGCY 8 cut(s) 71, 371, 446, 458, 511, 527, 533, 617
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 160
DpnI GATC 3 cut(s) 98, 396, 570
DpnII GATC 3 cut(s) 96, 394, 568
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 102
EcoRI GAATTC 2 cut(s) 33, 309
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 4 cut(s) 106, 132, 394, 589
FaiI YATR 9 cut(s) 104, 130, 173, 188, 368, 392, 412, 414, 587
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 4 cut(s) 102, 128, 390, 585
FauI CCCGC 1 cut(s) 457
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 58, 453
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 2 cut(s) 71, 371
HapII CCGG 2 cut(s) 89, 398
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 4 cut(s) 106, 132, 394, 589
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 611
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 2 cut(s) 89, 398
HphI GGTGA 2 cut(s) 91, 112
Hpy166II GTNNAC 4 cut(s) 120, 332, 403, 470
Hpy188I TCNGA 6 cut(s) 39, 81, 199, 320, 543, 576
Hpy188III TCNNGA 3 cut(s) 306, 502, 620
Hpy8I GTNNAC 4 cut(s) 120, 332, 403, 470
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 4 cut(s) 263, 296, 498, 556
HpyCH4V TGCA 4 cut(s) 470, 475, 547, 563
HpyF3I CTNAG 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 4 cut(s) 106, 132, 394, 589
HspAI GCGC 1 cut(s) 289
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 3 cut(s) 96, 394, 568
LpnPI CCDG 5 cut(s) 53, 102, 210, 411, 463
LweI GCATC 2 cut(s) 330, 534
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 492
MalI GATC 3 cut(s) 98, 396, 570
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 96, 394, 568
MboII GAAGA 2 cut(s) 260, 473
MflI RGATCY 2 cut(s) 394, 568
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 5 cut(s) 33, 108, 309, 515, 592
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 4 cut(s) 156, 382, 517, 582
MseI TTAA 4 cut(s) 237, 285, 345, 402
MslI CAYNNNNRTG 2 cut(s) 297, 320
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 2 cut(s) 89, 398
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 96, 394, 568
NlaIII CATG 4 cut(s) 106, 132, 394, 589
NlaIV GGNNCC 3 cut(s) 93, 396, 570
NmuCI GTSAC 1 cut(s) 492
NspI RCATGY 1 cut(s) 132
NspV TTCGAA 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 297
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PspN4I GGNNCC 3 cut(s) 93, 396, 570
PsuI RGATCY 2 cut(s) 394, 568
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 297, 320
SaqAI TTAA 4 cut(s) 237, 285, 345, 402
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 96, 394, 568
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 620
SduI GDGCHC 1 cut(s) 472
SetI ASST 2 cut(s) 207, 619
SfaNI GCATC 2 cut(s) 330, 534
SfuI TTCGAA 1 cut(s) 60
SmiMI CAYNNNNRTG 2 cut(s) 297, 320
SmlI CTYRAG 4 cut(s) 335, 344, 373, 618
SmoI CTYRAG 4 cut(s) 335, 344, 373, 618
Sse9I AATT 5 cut(s) 33, 108, 309, 515, 592
SsiI CCGC 3 cut(s) 72, 378, 464
SspI AATATT 1 cut(s) 354
SspMI CTAG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 4 cut(s) 263, 296, 498, 556
TaqI TCGA 4 cut(s) 60, 154, 305, 357
TasI AATT 5 cut(s) 33, 108, 309, 515, 592
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 4 cut(s) 237, 285, 345, 402
Tru9I TTAA 4 cut(s) 237, 285, 345, 402
TscAI CASTG 2 cut(s) 477, 501
TseFI GTSAC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 2 cut(s) 188, 590
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 2 cut(s) 477, 501
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 468
XapI RAATTY 2 cut(s) 33, 309
XceI RCATGY 1 cut(s) 132
XspI CTAG 1 cut(s) 245
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.