Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0017897

Physical Location & Seq

Genomic Coordinates Reverse (-)

8073018 .. 8073254

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1097200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGTGATGAATATGATGATGGAAGTTGAAGCGGAAGTTGATTATGAGAAGGGATGCTGTACCCCGAAACGCAGCGAGTTTCGGATTCCGGAGGCGGTGGCGCCTCCTCCTGCGCCAAAGAAGAAGGCGTATTGGGTTGGAAAGAAGAACAAGAAGCCGCCGAAGAACGGGTATTTTAACCCTCCTGATCTCGAACTACTGTTTGCAGTGACTCCAGTACGCCAAGCTTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

79

Amino Acids

8.9

Weight (kDa)

9.2

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07500
fragaria_vesca	FvH4_3g36811
malus_domestica	MD03G1088000.v1.1 MD11G1097200.v1.1
prunus_persica	Prupe.6G072300_v2.0.a1
pyrus_communis	pycom03g06950 pycom11g08190
rosa_rugosa	Rorug05G0375400
rosa_samantha	Rh5BG449600 Rh5CG472200 Rh5DG463200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	3 cut(s)	32, 95, 158
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	61, 219
AfiI	CCNNNNNNNGG	2 cut(s)	167, 229
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	103, 115
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	104
BisI	GCNGC	2 cut(s)	73, 158
BlsI	GCNGC	2 cut(s)	74, 159
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 229
Bse1I	ACTGG	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	88
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	167, 229
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	167, 229
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	3 cut(s)	32, 95, 158
BspEI	TCCGGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	103, 115
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
CfoI	GCGC	2 cut(s)	103, 115
Csp6I	GTAC	2 cut(s)	60, 218
CviJI	RGCY	3 cut(s)	157, 227, 233
CviKI_1	RGCY	3 cut(s)	157, 227, 233
CviQI	GTAC	2 cut(s)	60, 218
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
FaiI	YATR	2 cut(s)	14, 45
Fnu4HI	GCNGC	2 cut(s)	73, 158
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	73, 158
GlaI	GCGC	2 cut(s)	102, 114
GluI	GCNGC	2 cut(s)	73, 158
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	104
HapII	CCGG	1 cut(s)	89
HhaI	GCGC	2 cut(s)	103, 115
Hin1I	GRCGYC	1 cut(s)	101
Hin6I	GCGC	2 cut(s)	101, 113
HinP1I	GCGC	2 cut(s)	101, 113
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	2 cut(s)	85, 211
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	89, 185, 191
HpyAV	CCTTC	2 cut(s)	43, 118
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	101
HspAI	GCGC	2 cut(s)	101, 113
KasI	GGCGCC	1 cut(s)	100
Kpn2I	TCCGGA	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	102, 123, 198, 228
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	133, 157, 175
Mly113I	GGCGCC	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	85, 114, 117, 192
MroI	TCCGGA	1 cut(s)	88
MseI	TTAA	2 cut(s)	177, 235
MspI	CCGG	1 cut(s)	89
NarI	GGCGCC	1 cut(s)	101
NdeII	GATC	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	74, 159
PleI	GAGTC	1 cut(s)	205
PluTI	GGCGCC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	102
RsaI	GTAC	2 cut(s)	61, 219
RsaNI	GTAC	2 cut(s)	60, 218
SaqAI	TTAA	2 cut(s)	177, 235
SatI	GCNGC	2 cut(s)	73, 158
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	205
SetI	ASST	1 cut(s)	229
SfaNI	GCATC	1 cut(s)	44
SfoI	GGCGCC	1 cut(s)	102
SgeI	CNNG	9 cut(s)	76, 88, 101, 122, 163, 181, 197, 203, 227
SsiI	CCGC	3 cut(s)	32, 95, 158
SspDI	GGCGCC	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	192
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	177, 235
Tru9I	TTAA	2 cut(s)	177, 235
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.