Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0017897

Physical Location & Seq

Genomic Coordinates Reverse (-)

5514378 .. 5515213

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATATACTTGCTGCTATTTCTTCATCCAGGGCCCACGTGGCAAACTTTCTGGTTGATTTATGAAATTTCCAGAACAAACTCGACATCTGGAATATGGTTTTCCACTTATGCCACAAGCTATAAGTGTTATTTCCACAAGCTCCTCCCTAATTTTGGGCAACAAACCCTAAAACTATTTGGGCTCCTAGGTTTACTCACGGCACCACTTCATGTACAGAACTTGGCCCATATTTTCAATATAGTTTCCCGCGCTTTTCACCGACGTAATTTGGCGCTTGTACTAGAGACCCAAAGAACTCCACAAAACACGGTCTTAAGTCGGTCACGTGTCAGCACTAAAAAGAAAAAAGCACTACAAACCGCGACAGTAAATACGGTGGTGAATATGATGATGGAAGTTGAAGCGGAAGTTGATTACGAGAAGGGATGCTGTACCCCGAAACGCAGCGAGTTTCGGATTCCCGAGGCGGTGGCGCCTCCTCCTGCTCCAAAGAAGAAGGCGTTTTGGGTTGGGAAGAAGAACAAGAAGCCGCCGCAGCCGCCGAAGAACGGGTATTTTAACCCGCCTGATCTCGAACTAGTGTTTGCAGTGACTCCAGTACAGCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

205

Amino Acids

23.26

Weight (kDa)

9.94

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07500
fragaria_vesca	FvH4_3g36811
malus_domestica	MD03G1088000.v1.1 MD11G1097200.v1.1
prunus_persica	Prupe.6G072300_v2.0.a1
pyrus_communis	pycom03g06950 pycom11g08190
rosa_rugosa	Rorug05G0375400
rosa_samantha	Rh5BG449600 Rh5CG472200 Rh5DG463200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	202, 475
AccII	CGCG	2 cut(s)	252, 365
AciI	CCGC	8 cut(s)	250, 363, 407, 470, 533, 536, 542, 566
AcsI	RAATTY	1 cut(s)	66
AcvI	CACGTG	2 cut(s)	39, 329
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	4 cut(s)	216, 282, 436, 603
AfiI	CCNNNNNNNGG	2 cut(s)	155, 551
AflII	CTTAAG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	238, 404
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	120, 142, 611
AluI	AGCT	3 cut(s)	120, 142, 611
Alw26I	GTCTC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	32, 225
ApaI	GGGCCC	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	13, 447, 538
ApoI	RAATTY	1 cut(s)	66
AspA2I	CCTAGG	1 cut(s)	187
AspLEI	GCGC	3 cut(s)	254, 277, 478
AspS9I	GGNCC	3 cut(s)	32, 33, 226
AsuHPI	GGTGA	2 cut(s)	251, 394
AvaI	CYCGRG	1 cut(s)	464
AvrII	CCTAGG	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	36
BanI	GGYRCC	2 cut(s)	202, 475
BanII	GRGCYC	2 cut(s)	36, 186
BbrPI	CACGTG	2 cut(s)	39, 329
BbvI	GCAGC	2 cut(s)	459, 550
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	281
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	3 cut(s)	188, 284, 581
BfoI	RGCGCY	2 cut(s)	278, 479
BfrI	CTTAAG	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	6 cut(s)	14, 448, 533, 536, 539, 542
BlnI	CCTAGG	1 cut(s)	187
BlsI	GCNGC	6 cut(s)	15, 449, 534, 537, 540, 543
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	3 cut(s)	32, 33, 226
BmiI	GGNNCC	4 cut(s)	34, 185, 204, 477
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	582
BsaAI	YACGTR	2 cut(s)	39, 329
BsaHI	GRCGYC	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	29, 187, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 551
Bse1I	ACTGG	1 cut(s)	599
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	29, 187, 465
BseGI	GGATG	2 cut(s)	25, 434
BseLI	CCNNNNNNNGG	2 cut(s)	155, 551
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	2 cut(s)	134, 471
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	459, 550
Bsh1236I	CGCG	2 cut(s)	252, 365
BshFI	GGCC	2 cut(s)	34, 227
BshNI	GGYRCC	2 cut(s)	202, 475
BsiHKCI	CYCGRG	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	155, 551
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	34, 227
Bso31I	GGTCTC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	464
Bsp120I	GGGCCC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	36, 186
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	571
BspACI	CCGC	8 cut(s)	250, 363, 407, 470, 533, 536, 542, 566
BspANI	GGCC	2 cut(s)	34, 227
BspFNI	CGCG	2 cut(s)	252, 365
BspLI	GGNNCC	4 cut(s)	34, 185, 204, 477
BspT107I	GGYRCC	2 cut(s)	202, 475
BspTI	CTTAAG	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	3 cut(s)	29, 187, 465
BssMI	GATC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	313, 370, 379
BstACI	GRCGYC	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	214
BstBAI	YACGTR	2 cut(s)	39, 329
BstC8I	GCNNGC	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	25, 434
BstFNI	CGCG	2 cut(s)	252, 365
BstH2I	RGCGCY	2 cut(s)	278, 479
BstHHI	GCGC	3 cut(s)	254, 277, 478
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 538, 541
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	36
BstUI	CGCG	2 cut(s)	252, 365
BstV1I	GCAGC	2 cut(s)	459, 550
BsuRI	GGCC	2 cut(s)	34, 227
BtsCI	GGATG	2 cut(s)	25, 434
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	3 cut(s)	254, 277, 478
Cfr13I	GGNCC	3 cut(s)	32, 33, 226
Csp6I	GTAC	4 cut(s)	215, 281, 435, 602
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	8 cut(s)	34, 120, 142, 184, 227, 532, 541, 611
CviKI_1	RGCY	8 cut(s)	34, 120, 142, 184, 227, 532, 541, 611
CviQI	GTAC	4 cut(s)	215, 281, 435, 602
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	36, 186
Eco31I	GGTCTC	1 cut(s)	281
Eco72I	CACGTG	2 cut(s)	39, 329
Eco88I	CYCGRG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	36, 186
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	215
FaiI	YATR	9 cut(s)	7, 63, 97, 111, 123, 213, 231, 242, 389
FatI	CATG	1 cut(s)	211
FauI	CCCGC	2 cut(s)	257, 573
Fnu4HI	GCNGC	6 cut(s)	14, 448, 533, 536, 539, 542
FokI	GGATG	2 cut(s)	12, 441
FriOI	GRGCYC	2 cut(s)	36, 186
Fsp4HI	GCNGC	6 cut(s)	14, 448, 533, 536, 539, 542
FspBI	CTAG	3 cut(s)	188, 284, 581
GlaI	GCGC	3 cut(s)	253, 276, 477
GluI	GCNGC	6 cut(s)	14, 448, 533, 536, 539, 542
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	2 cut(s)	278, 479
HaeIII	GGCC	2 cut(s)	34, 227
HhaI	GCGC	3 cut(s)	254, 277, 478
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	3 cut(s)	252, 275, 476
HinP1I	GCGC	3 cut(s)	252, 275, 476
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	2 cut(s)	460, 595
HphI	GGTGA	2 cut(s)	251, 394
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	4 cut(s)	72, 90, 464, 575
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	418, 493
HpyCH4III	ACNGT	3 cut(s)	313, 370, 379
HpyCH4IV	ACGT	3 cut(s)	38, 265, 328
HpyCH4V	TGCA	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 538, 541
HpySE526I	ACGT	3 cut(s)	38, 265, 328
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	3 cut(s)	252, 275, 476
KasI	GGCGCC	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	3 cut(s)	147, 189, 493
LpnPI	CCDG	7 cut(s)	15, 37, 42, 75, 85, 498, 582
Lsp1109I	GCAGC	2 cut(s)	459, 550
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	3 cut(s)	188, 284, 581
MaeII	ACGT	3 cut(s)	38, 265, 328
MaeIII	GTNAC	2 cut(s)	324, 592
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	5 cut(s)	14, 508, 529, 532, 559
MhlI	GDGCHC	2 cut(s)	36, 186
MluCI	AATT	3 cut(s)	66, 151, 268
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	589
MnlI	CCTC	4 cut(s)	155, 460, 489, 492
MseI	TTAA	2 cut(s)	317, 561
MspCI	CTTAAG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	2 cut(s)	252, 365
MwoI	GCNNNNNNNGC	3 cut(s)	40, 538, 541
NarI	GGCGCC	1 cut(s)	476
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	4 cut(s)	34, 185, 204, 477
NmuCI	GTSAC	2 cut(s)	324, 592
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	6 cut(s)	15, 449, 534, 537, 540, 543
PleI	GAGTC	1 cut(s)	589
PluTI	GGCGCC	1 cut(s)	479
PmaCI	CACGTG	2 cut(s)	39, 329
PmlI	CACGTG	2 cut(s)	39, 329
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	2 cut(s)	39, 329
Psp6I	CCWGG	1 cut(s)	28
PspCI	CACGTG	2 cut(s)	39, 329
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	34, 185, 204, 477
PspOMI	GGGCCC	1 cut(s)	32
PspPI	GGNCC	3 cut(s)	32, 33, 226
RsaI	GTAC	4 cut(s)	216, 282, 436, 603
RsaNI	GTAC	4 cut(s)	215, 281, 435, 602
SaqAI	TTAA	2 cut(s)	317, 561
SatI	GCNGC	6 cut(s)	14, 448, 533, 536, 539, 542
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	3 cut(s)	32, 33, 226
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	36, 186
SetI	ASST	7 cut(s)	41, 122, 144, 193, 268, 331, 613
SfaNI	GCATC	1 cut(s)	419
SfoI	GGCGCC	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	3 cut(s)	66, 151, 268
SsiI	CCGC	8 cut(s)	250, 363, 407, 470, 533, 536, 542, 566
SspDI	GGCGCC	1 cut(s)	475
SspMI	CTAG	3 cut(s)	188, 284, 581
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	313, 370, 379
TaiI	ACGT	3 cut(s)	41, 268, 331
TaqI	TCGA	2 cut(s)	83, 576
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	3 cut(s)	66, 151, 268
TatI	WGTACW	3 cut(s)	214, 280, 601
TauI	GCSGC	3 cut(s)	535, 538, 544
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	317, 561
Tru9I	TTAA	2 cut(s)	317, 561
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	324, 592
TseI	GCWGC	3 cut(s)	13, 447, 538
Tsp45I	GTSAC	2 cut(s)	324, 592
TspDTI	ATGAA	3 cut(s)	14, 78, 200
TspRI	CASTG	1 cut(s)	597
Vha464I	CTTAAG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36
XmaJI	CCTAGG	1 cut(s)	187
XspI	CTAG	3 cut(s)	188, 284, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.