Rorug05G0375400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017897
Physical Location & Seq
Reverse (-)
50628552 .. 50634483
5932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0375400.1

Sequence Viewer

Length: 1194 bp
ATGGCTTTTTGTGGAGGTGCCAAACGTTCTCTTGGTTCACTACTGAGTATTAGGATGCTTAATGGGTCATCAACTACAGCTAGTGCTGCCAATGGGGGTTGTTTTTCTAGCTGTGTTTCGAACACAAGAGTCACAGAGACACAAATTCCTCTAGGACTTGCCAGTACCCAATGTGGGTCTGCTGTCTTTCTTCGGAGGTTCAGCGTTGAAGCTTCTGACCATATGAGTCTCATAAAGCAACTGAGGCAGAGAACCAGCGCTCCTATCAAAGATGTCAAGGCGGCTCTCGTTGATTGTAATTGGGAAATCGAGGCTGCACTCAAGGAATTAAGGAGAAGAGGGAAGGTTTTGGCAACGAAAAAGTCGTCAAGAATGGCTTCTGAGGGTTTGCTTGCACTGGCTCACAGTGACAGCAAGGCTGCTCTTATTGAACTCAACTGTGAGACTGACTTTGTTGCTAGAAATGAAATCTTTCAATTCTTGGCCTTAGCTTTGGCAAAGCATGCTTTGTTGCTTGAAGGCTCTTCTCAACAGGTTTCTGGGGTCTTTCCCATTGCCTCTGAACATTTACAGGACTTGAAGTTAAATCTTGAACATCCAAAAATTAGTGGAGAAACAACTGTTCAGAATGCAATTACGGAAGTGGCTGCAGTAATGGGGGAAAATATTAAACTCAGAAGGGGATTTGTGATGTCTACTGCTTCACATGGTGTTGTTTCCACGTATCTTCATTCAAGTCCCCAACCAGGTTTGGGTCGCATTGCTGGGATTTTATCTCTTGAAGTAGAGGATAAGAATGCTGAGTTGGATGCCATTCAGCGCATTGGGTCGGAATTGGCAATGCATGTGGTGGCAGCAAAGCCTTTATTCTTAACAAAGGAACTTGTTTCTACTGATGCGTTAGAGAGTGAACATGAAATTCTCAAGTCTCAGGCTGAAAGTACGGGCAAATCCCAGATGGCCATAGACAAAATAGTAGAAGGTCGATTGCGTAAATACTATGAGGAAGTTGTTTTGATGGAACAGAAGTTTATTGTGGACGATTCTGTAAATGTAAAGACACTATTAGATAAGCTATCTAAGGAAGTGGGATCACCTGTGAAGATTAAGAGCTTTTTCAGGATGGAAGTTGGAGAAGGAATTCAGAGGCTAGAAGAATCCAGTACATCTGAAAATTTGGCTGAGGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

43.0

Weight (kDa)

6.54

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF_TS PF00889 140 - 379 1.5e-54 Elongation factor TS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07500
fragaria_vesca FvH4_3g36811
malus_domestica MD03G1088000.v1.1 MD11G1097200.v1.1
prunus_persica Prupe.6G072300_v2.0.a1
pyrus_communis pycom03g06950 pycom11g08190
rosa_rugosa Rorug05G0375400
rosa_samantha Rh5BG449600 Rh5CG472200 Rh5DG463200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 695
AciI CCGC 1 cut(s) 281
AclI AACGTT 1 cut(s) 25
AclWI GGATC 1 cut(s) 1099
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 4 cut(s) 144, 918, 1140, 1174
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 3 cut(s) 166, 943, 1165
AfeI AGCGCT 1 cut(s) 259
AfiI CCNNNNNNNGG 3 cut(s) 174, 746, 752
AgsI TTSAA 8 cut(s) 209, 431, 476, 518, 580, 593, 735, 782
AjnI CCWGG 1 cut(s) 745
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 6 cut(s) 80, 111, 212, 491, 1075, 1113
AluI AGCT 6 cut(s) 80, 111, 212, 491, 1075, 1113
Alw26I GTCTC 4 cut(s) 131, 233, 437, 933
AlwI GGATC 1 cut(s) 1099
Aor51HI AGCGCT 1 cut(s) 259
AoxI GGCC 2 cut(s) 483, 960
ApeKI GCWGC 5 cut(s) 86, 314, 419, 647, 854
ApoI RAATTY 4 cut(s) 144, 918, 1140, 1174
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
Asp700I GAANNNNTTC 3 cut(s) 376, 471, 1140
AspLEI GCGC 2 cut(s) 260, 822
AsuHPI GGTGA 1 cut(s) 1086
AsuII TTCGAA 1 cut(s) 119
BalI TGGCCA 1 cut(s) 962
BanI GGYRCC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 1182
BbvI GCAGC 5 cut(s) 73, 301, 406, 634, 866
BccI CCATC 3 cut(s) 952, 1012, 1117
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 4 cut(s) 131, 233, 437, 933
BfaI CTAG 5 cut(s) 81, 108, 152, 459, 1151
BfmI CTRYAG 2 cut(s) 75, 648
BfoI RGCGCY 1 cut(s) 261
BisI GCNGC 6 cut(s) 87, 282, 315, 420, 648, 855
BlsI GCNGC 6 cut(s) 88, 283, 316, 421, 649, 856
Bme1390I CCNGG 1 cut(s) 747
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 747
BmsI GCATC 3 cut(s) 45, 799, 886
Bpu10I CCTNAGC 2 cut(s) 487, 1182
Bpu14I TTCGAA 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 305, 908
BsaAI YACGTR 1 cut(s) 723
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 746, 752
Bse1I ACTGG 3 cut(s) 162, 402, 1161
Bse3DI GCAATG 3 cut(s) 552, 759, 846
BseBI CCWGG 1 cut(s) 747
BseGI GGATG 4 cut(s) 60, 595, 814, 1128
BseLI CCNNNNNNNGG 3 cut(s) 174, 746, 752
BseMI GCAATG 3 cut(s) 552, 759, 846
BseMII CTCAG 7 cut(s) 35, 233, 372, 688, 792, 944, 1173
BseNI ACTGG 3 cut(s) 162, 402, 1161
BseXI GCAGC 5 cut(s) 73, 301, 406, 634, 866
BseYI CCCAGC 1 cut(s) 764
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 2 cut(s) 485, 962
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 3 cut(s) 174, 746, 752
BsmAI GTCTC 4 cut(s) 131, 233, 437, 933
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 2 cut(s) 634, 802
BsnI GGCC 2 cut(s) 485, 962
Bsp119I TTCGAA 1 cut(s) 119
Bsp143I GATC 1 cut(s) 1091
BspACI CCGC 1 cut(s) 281
BspANI GGCC 2 cut(s) 485, 962
BspCNI CTCAG 7 cut(s) 36, 234, 373, 687, 793, 943, 1174
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 1 cut(s) 1099
BspQI GCTCTTC 1 cut(s) 529
BspT104I TTCGAA 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 3 cut(s) 552, 759, 846
BsrI ACTGG 3 cut(s) 162, 402, 1161
BssMI GATC 1 cut(s) 1091
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 3 cut(s) 407, 440, 622
Bst6I CTCTTC 2 cut(s) 331, 529
BstAPI GCANNNNNTGC 1 cut(s) 503
BstBAI YACGTR 1 cut(s) 723
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 393, 504
BstDEI CTNAG 9 cut(s) 44, 242, 381, 487, 674, 801, 930, 1080, 1182
BstF5I GGATG 4 cut(s) 60, 595, 814, 1128
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 2 cut(s) 260, 822
BstKTI GATC 1 cut(s) 1094
BstMAI GTCTC 4 cut(s) 131, 233, 437, 933
BstMBI GATC 1 cut(s) 1091
BstMWI GCNNNNNNNGC 3 cut(s) 86, 244, 503
BstNI CCWGG 1 cut(s) 747
BstNSI RCATGY 2 cut(s) 506, 848
BstSCI CCNGG 1 cut(s) 745
BstSFI CTRYAG 2 cut(s) 75, 648
BstV1I GCAGC 5 cut(s) 73, 301, 406, 634, 866
BsuRI GGCC 2 cut(s) 485, 962
BtsCI GGATG 4 cut(s) 60, 595, 814, 1128
BtsIMutI CAGTG 2 cut(s) 395, 412
Cac8I GCNNGC 2 cut(s) 393, 504
CfoI GCGC 2 cut(s) 260, 822
CsiI ACCWGGT 1 cut(s) 745
Csp6I GTAC 3 cut(s) 165, 942, 1164
CspCI CAANNNNNGTGG 2 cut(s) 828, 863
CviAII CATG 4 cut(s) 503, 707, 845, 914
CviQI GTAC 3 cut(s) 165, 942, 1164
DdeI CTNAG 9 cut(s) 44, 242, 381, 487, 674, 801, 930, 1080, 1182
DpnI GATC 1 cut(s) 1093
DpnII GATC 1 cut(s) 1091
DraIII CACNNNGTG 1 cut(s) 710
EaeI YGGCCR 1 cut(s) 960
Eam1104I CTCTTC 2 cut(s) 331, 529
EarI CTCTTC 2 cut(s) 331, 529
Eco47III AGCGCT 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 1140
EcoRII CCWGG 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 846
FaeI CATG 4 cut(s) 506, 710, 848, 917
FaiI YATR 9 cut(s) 222, 224, 233, 504, 708, 846, 915, 965, 1002
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FaqI GGGAC 1 cut(s) 723
FatI CATG 4 cut(s) 502, 706, 844, 913
FauNDI CATATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 695
Fnu4HI GCNGC 6 cut(s) 87, 282, 315, 420, 648, 855
FokI GGATG 4 cut(s) 67, 582, 821, 1135
Fsp4HI GCNGC 6 cut(s) 87, 282, 315, 420, 648, 855
FspBI CTAG 5 cut(s) 81, 108, 152, 459, 1151
GlaI GCGC 2 cut(s) 259, 821
GluI GCNGC 6 cut(s) 87, 282, 315, 420, 648, 855
GsaI CCCAGC 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 2 cut(s) 485, 962
HhaI GCGC 2 cut(s) 260, 822
Hin1II CATG 4 cut(s) 506, 710, 848, 917
Hin6I GCGC 2 cut(s) 258, 820
HinP1I GCGC 2 cut(s) 258, 820
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 4 cut(s) 129, 226, 1043, 1157
HphI GGTGA 1 cut(s) 1086
Hpy166II GTNNAC 4 cut(s) 38, 696, 911, 1039
Hpy188I TCNGA 9 cut(s) 195, 217, 382, 562, 627, 677, 832, 1146, 1171
Hpy188III TCNNGA 4 cut(s) 369, 590, 779, 1120
Hpy8I GTNNAC 4 cut(s) 38, 696, 911, 1039
HpyAV CCTTC 5 cut(s) 337, 512, 672, 974, 1130
HpyCH4III ACNGT 3 cut(s) 407, 440, 622
HpyCH4IV ACGT 2 cut(s) 25, 722
HpyCH4V TGCA 5 cut(s) 317, 395, 632, 650, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 244, 503
HpyF3I CTNAG 9 cut(s) 44, 242, 381, 487, 674, 801, 930, 1080, 1182
HpySE526I ACGT 2 cut(s) 25, 722
Hsp92II CATG 4 cut(s) 506, 710, 848, 917
HspAI GCGC 2 cut(s) 258, 820
Kzo9I GATC 1 cut(s) 1091
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 5 cut(s) 73, 301, 406, 634, 866
LweI GCATC 3 cut(s) 45, 799, 886
MabI ACCWGGT 1 cut(s) 745
MaeI CTAG 5 cut(s) 81, 108, 152, 459, 1151
MaeII ACGT 2 cut(s) 25, 722
MaeIII GTNAC 2 cut(s) 130, 407
MalI GATC 1 cut(s) 1093
MboI GATC 1 cut(s) 1091
MboII GAAGA 6 cut(s) 182, 348, 516, 719, 1114, 1166
MlsI TGGCCA 1 cut(s) 962
MluNI TGGCCA 1 cut(s) 962
MlyI GAGTC 2 cut(s) 138, 235
MmeI TCCRAC 3 cut(s) 786, 810, 1111
Mox20I TGGCCA 1 cut(s) 962
Mph1103I ATGCAT 1 cut(s) 846
MroXI GAANNNNTTC 3 cut(s) 376, 471, 1140
MscI TGGCCA 1 cut(s) 962
MseI TTAA 6 cut(s) 60, 329, 584, 669, 872, 1107
Msp20I TGGCCA 1 cut(s) 962
MspR9I CCNGG 1 cut(s) 747
Mva1269I GAATGC 2 cut(s) 634, 802
MvaI CCWGG 1 cut(s) 747
MwoI GCNNNNNNNGC 3 cut(s) 86, 244, 503
NdeI CATATG 1 cut(s) 222
NdeII GATC 1 cut(s) 1091
NlaIII CATG 4 cut(s) 506, 710, 848, 917
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 130, 407
NsiI ATGCAT 1 cut(s) 846
NspI RCATGY 2 cut(s) 506, 848
NspV TTCGAA 1 cut(s) 119
PaeI GCATGC 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 2 cut(s) 634, 802
PdmI GAANNNNTTC 3 cut(s) 376, 471, 1140
PfeI GAWTC 2 cut(s) 1043, 1157
PkrI GCNGC 6 cut(s) 88, 283, 316, 421, 649, 856
PleI GAGTC 2 cut(s) 137, 234
PpsI GAGTC 2 cut(s) 137, 234
Ppu21I YACGTR 1 cut(s) 723
Psp1406I AACGTT 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 652
RsaI GTAC 3 cut(s) 166, 943, 1165
RsaNI GTAC 3 cut(s) 165, 942, 1164
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 6 cut(s) 60, 329, 584, 669, 872, 1107
SatI GCNGC 6 cut(s) 87, 282, 315, 420, 648, 855
Sau3AI GATC 1 cut(s) 1091
SchI GAGTC 2 cut(s) 138, 235
ScrFI CCNGG 1 cut(s) 747
SexAI ACCWGGT 1 cut(s) 745
SfaNI GCATC 3 cut(s) 45, 799, 886
SfcI CTRYAG 2 cut(s) 75, 648
SfuI TTCGAA 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 320, 923
SmoI CTYRAG 2 cut(s) 320, 923
SphI GCATGC 1 cut(s) 506
SsiI CCGC 1 cut(s) 281
SspI AATATT 1 cut(s) 667
SspMI CTAG 5 cut(s) 81, 108, 152, 459, 1151
StyD4I CCNGG 1 cut(s) 745
TaaI ACNGT 3 cut(s) 407, 440, 622
TaiI ACGT 2 cut(s) 28, 725
TaqI TCGA 3 cut(s) 119, 309, 985
TatI WGTACW 1 cut(s) 1163
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 2 cut(s) 1043, 1157
Tru1I TTAA 6 cut(s) 60, 329, 584, 669, 872, 1107
Tru9I TTAA 6 cut(s) 60, 329, 584, 669, 872, 1107
TscAI CASTG 2 cut(s) 402, 412
TseFI GTSAC 2 cut(s) 130, 407
TseI GCWGC 5 cut(s) 86, 314, 419, 647, 854
Tsp45I GTSAC 2 cut(s) 130, 407
TspDTI ATGAA 3 cut(s) 480, 719, 930
TspGWI ACGGA 1 cut(s) 653
TspRI CASTG 2 cut(s) 402, 412
XapI RAATTY 4 cut(s) 144, 918, 1140, 1174
XceI RCATGY 2 cut(s) 506, 848
XmiI GTMKAC 1 cut(s) 695
XmnI GAANNNNTTC 3 cut(s) 376, 471, 1140
XspI CTAG 5 cut(s) 81, 108, 152, 459, 1151
Zsp2I ATGCAT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.