Rh5DG463200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017897
Physical Location & Seq
Forward (+)
73430707 .. 73431310
604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG463200.1

Sequence Viewer

Length: 267 bp
ATGGTGGTGATGATGATAGAGATGGAAGAGGAAGCGGGTTACTCTACACCCAAGCGCATGGGGAAAGAAGAGGCGGGTTACTCCACGCCCAAACGCCGTGAGTGTCGGATTCCAGAGTGGTCGCTGCCGCCTCCACAGCCGAAGAAGAAACCGTACTTTTTGGGGCAGAAGAAGCCGGGGCCCCCGAAGGATGGTTATTTCAACTCGCCGGATATCGAAGTTTTCTTCGCAGCAATGACTCCGAGAAGCCAAACTAGCTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.02

Weight (kDa)

9.1

Isoelectric Point (pI)

67.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07500
fragaria_vesca FvH4_3g36811
malus_domestica MD03G1088000.v1.1 MD11G1097200.v1.1
prunus_persica Prupe.6G072300_v2.0.a1
pyrus_communis pycom03g06950 pycom11g08190
rosa_rugosa Rorug05G0375400
rosa_samantha Rh5BG449600 Rh5CG472200 Rh5DG463200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 74, 128
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
AoxI GGCC 1 cut(s) 179
ApaI GGGCCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 124, 230
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 179, 180
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
BbvI GCAGC 2 cut(s) 111, 242
BccI CCATC 2 cut(s) 16, 185
BceAI ACGGC 1 cut(s) 81
BcnI CCSGG 1 cut(s) 177
BfaI CTAG 1 cut(s) 255
BisI GCNGC 3 cut(s) 125, 128, 231
BlsI GCNGC 3 cut(s) 126, 129, 232
Bme1390I CCNGG 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 179, 180
BmiI GGNNCC 3 cut(s) 180, 181, 182
BmrFI CCNGG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 111, 242
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 176, 209
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 181
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 183
BspACI CCGC 3 cut(s) 35, 74, 128
BspANI GGCC 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 180, 181, 182
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 2 cut(s) 21, 63
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 136, 172, 255
BstSCI CCNGG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 111, 242
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 196
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 179, 180
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 58
CviJI RGCY 6 cut(s) 139, 175, 181, 249, 258, 263
CviKI_1 RGCY 6 cut(s) 139, 175, 181, 249, 258, 263
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 21, 63
EarI CTCTTC 2 cut(s) 21, 63
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 214
EcoO109I RGGNCCY 2 cut(s) 179, 180
EcoRV GATATC 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 1 cut(s) 61
FaiI YATR 1 cut(s) 59
FatI CATG 1 cut(s) 57
FauI CCCGC 2 cut(s) 28, 67
Fnu4HI GCNGC 3 cut(s) 125, 128, 231
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 125, 128, 231
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 125, 128, 231
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 176, 209
HhaI GCGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 2 cut(s) 109, 238
HpaII CCGG 2 cut(s) 176, 209
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 108, 243
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 172, 255
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 126, 189, 222
Lsp1109I GCAGC 2 cut(s) 111, 242
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 38, 77
MboII GAAGA 6 cut(s) 38, 80, 154, 157, 181, 217
MhlI GDGCHC 1 cut(s) 183
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 3 cut(s) 22, 64, 141
MspI CCGG 2 cut(s) 176, 209
MspR9I CCNGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 136, 172, 255
NciI CCSGG 1 cut(s) 177
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 3 cut(s) 180, 181, 182
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 126, 129, 232
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 180, 181, 182
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 2 cut(s) 179, 180
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 3 cut(s) 125, 128, 231
Sau96I GGNCC 2 cut(s) 179, 180
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 183
SetI ASST 1 cut(s) 260
SsiI CCGC 3 cut(s) 35, 74, 128
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 216
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 109
TseI GCWGC 2 cut(s) 124, 230
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.