MD11G1163700.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017741
Physical Location & Seq
Forward (+)
16634167 .. 16636142
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1163700.v1.1.491

Sequence Viewer

Length: 1953 bp
ATGGCAACCAGCGGCAGCCCTCCCTGTATGCTTGTCGCCCAAACCCTTCCAAAGTTCGAGAAATGCAGAGCAATGTCTGAACTCCGGCAACTCCACGCCCACATTATCAAAACAAACCTCGTTACCCACACATTGATCATAAACAAACTCGTATCCTCCTGTTCTCTCTCTGGCGGCCTGGAGCACGCCCTTTCGGTCTTTCGTCGAATTGAAAACCCCAATCCCTTCATGTTTTTCACACTCATAAGGCACATTTCTGAGAGTGCGAATCCGTTGGAAGCTGTAGTTCTCTATGCGCATATGCTCTCTTCTTTGAAAAGTTTGGATGGTGTCGAATTTTCGATCCCTGCTGTACTGAAAGTGTGCGGCAAGTCGTGGGCTTTGGAGGAGGGGACGCAAGTTCATGGCCAAGTGTTGAAAACCCAGTTGCTGTTTGATATGTATGTGGCGAACGCATTGATCAGGATGTACTCGGAGCTGGGAGAGATTGACTTGGCAAAGAGGGTGTTTGATAAAATGCCTCAGAGAGATGTAATTTCTTGGAATTCACTGATTACAGGTTGTTTGAGGCTGCGGGAGATTGATTTGGCTCATGAGCTTTTCAATAAGATGCCCGAAAGGGACTTGGTTTCGTGCAATGCGATGATCGATGGGTATGGGAAGAGCGGGAAGTGTGAGCTTGCAGAGCAGGTTTTTAGGTCTATGAATAAAAAAGATGTGGTTACTTGGACATCAATGGTTTCAGCATATGTATTCAATCACCGTCCGAAGGAAGCATTGGGTTTATTTAGGGAAATATTGAATGTCGGGATTCGACCTGATGCCCCTGCTCTTGTTAGTGTTCTATCAGCCATCGCCGACTTGGGTTTTGTTGACGAAGGCAAATGGGTGCATACTTACATTTCGACAAATAAGATTAAGCTGAGTTCTGGGTTTATTGCTTCGGCTCTTATAGACATGTATGCGAAATGTGGACATATAGAAAATGCCTATCATGTCTTCAAACAGGTATCTCATTATAAAAATGTCGGGGACTGGAACTGTATGATCTCCGGCCTTTCAATGCATGGGCTTGGTCATCAAGCTCTGGAGGTATTCCTTGACATGAAAACAAAAGAAATCAAGCCAGATGAGATCACTTTCTTAGGACTGTTGAATGCTTGTAGTCATGAAGGTCTAGTTGAAGAGGGCAAGTTTTGTTTTAAACTCATGCAGGAGAAGTACAAAATCATCCCTACAATTCAGCACTATGGATGCATTATTGATCTCTTAGGTAGAGGCGGGCAATTGGATGATGCTGTTGAGATTGTACAGAATATGCCCATGGAGGCTGATGTTATTGTTTGGAAAGCTATTCTCAGTGCTTGTGTGCAGAACGGTGATTTTGCAATTGGGGAAAGTGCTGCCTTGAAGGCCATAGAGTTAGCTCCCGAAGACTCAAGTTGTTACATTCTCCTCTCAAATATTTACGCCAAAGTTGGGAGATGGGATGATGTGCGCAAGGTCAGATTAATGATGAAACGAAGAGGAGTGAGAAAGATTCCTGGATCCAGTTCAATCCTTGTGAACGGGAAGGTTCATGAATTTCTTGTGGGAAAGGAAATGGATGTTAAATGTAATGTCGAGGTTCTTTCAAAGATAGAAGAGGTGGTCTCTAGGTTGAAACTGGAAGGATATAAGCCTGACCTGACTCAAGTTCTTCTGGATATTGAAGAGGAAAATAAAGAGAGCTCACTTACCCTTCACAGCGAGAAGATGGCACTTGCATTTGGACTAATAAACACTAGCAACGGAGCTCCTATTCATATAGTGAAAAACTTAAGGGTTTGCTGTGATTGCCATTCGTTTATCAAACTGGTTTCTCGCGTTTACAATTGCCGAGTTGTTGTGAGAGACCAAAACCGTTTCCATTGTTTTGAGAATGGTTCCTGCTCCTGCAATGACTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

651

Amino Acids

72.82

Weight (kDa)

7.05

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 176 - 207 2.4e-06 PPR repeat family
PPR PF01535 179 - 208 1e-05 PPR repeat
PPR_2 PF13041 208 - 240 5.9e-06 PPR repeat family
PPR PF01535 210 - 239 3.6e-07 PPR repeat
PPR_2 PF13041 238 - 275 3.1e-06 PPR repeat family
PPR_2 PF13041 343 - 389 1.9e-10 PPR repeat family
E_motif PF20431 463 - 520 9.1e-19 E motif
DYW_deaminase PF14432 558 - 650 3.1e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017741)

Species Orthologous Gene IDs
malus_domestica MD11G1163700.v1.1
pyrus_communis pycom11g13520
rosa_chinensis RchiOBHm_Chr5g0044291
rosa_laevigata RLG00000034263
rosa_multiflora Rmu_sc0015666.1_g000004
rosa_roxburghii Rroxscaffold_1G00036670
rosa_rugosa Rorug05G0212900
rosa_samantha Rh5AG297500 Rh5BG304800 Rh5CG331700 Rh5DG314000
rosa_wichuraiana Rw5G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1020
Acc16I TGCGCA 2 cut(s) 297, 1499
Acc36I ACCTGC 1 cut(s) 679
AccBSI CCGCTC 1 cut(s) 666
AccII CGCG 1 cut(s) 1866
AciI CCGC 6 cut(s) 12, 174, 366, 574, 666, 1281
AclWI GGATC 3 cut(s) 337, 1542, 1555
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 3 cut(s) 335, 544, 1583
AfaI GTAC 4 cut(s) 354, 470, 1223, 1311
AfiI CCNNNNNNNGG 2 cut(s) 769, 1479
AflII CTTAAG 1 cut(s) 1819
AflIII ACRYGT 1 cut(s) 957
AjnI CCWGG 2 cut(s) 177, 1543
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
Alw21I GWGCWC 3 cut(s) 186, 1733, 1798
Alw26I GTCTC 2 cut(s) 1657, 1887
AlwI GGATC 3 cut(s) 337, 1542, 1555
AlwNI CAGNNNCTG 1 cut(s) 430
AoxI GGCC 4 cut(s) 175, 406, 1054, 1413
ApeKI GCWGC 3 cut(s) 15, 571, 1403
ApoI RAATTY 3 cut(s) 335, 544, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 851, 883
AseI ATTAAT 1 cut(s) 1511
AspLEI GCGC 2 cut(s) 298, 1500
AsuHPI GGTGA 2 cut(s) 752, 1391
BalI TGGCCA 1 cut(s) 408
BamHI GGATCC 1 cut(s) 1547
BanII GRGCYC 2 cut(s) 1733, 1798
BbsI GAAGAC 2 cut(s) 991, 1440
Bbv12I GWGCWC 3 cut(s) 186, 1733, 1798
BbvI GCAGC 3 cut(s) 27, 558, 1390
BccI CCATC 5 cut(s) 320, 644, 860, 1479, 1750
BciT130I CCWGG 2 cut(s) 179, 1545
BciVI GTATCC 1 cut(s) 163
BclI TGATCA 2 cut(s) 135, 459
BcoDI GTCTC 2 cut(s) 1657, 1887
BfaI CTAG 3 cut(s) 1178, 1656, 1785
BfmI CTRYAG 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 1819
BfuAI ACCTGC 1 cut(s) 679
BfuI GTATCC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 1412
BisI GCNGC 6 cut(s) 13, 16, 175, 367, 572, 1404
BlsI GCNGC 6 cut(s) 14, 17, 176, 368, 573, 1405
Bme1390I CCNGG 2 cut(s) 179, 1545
BmiI GGNNCC 2 cut(s) 1549, 1927
BmrFI CCNGG 2 cut(s) 179, 1545
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 4 cut(s) 600, 811, 1244, 1285
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 991, 1440
BplI GAGNNNNNCTC 2 cut(s) 1637, 1669
BpmI CTGGAG 2 cut(s) 200, 1109
BpuEI CTTGAG 2 cut(s) 1423, 1677
Bsa29I ATCGAT 1 cut(s) 648
BsaI GGTCTC 2 cut(s) 1657, 1887
BsaJI CCNNGG 1 cut(s) 1323
Bsc4I CCNNNNNNNGG 2 cut(s) 769, 1479
Bse1I ACTGG 5 cut(s) 424, 1040, 1551, 1671, 1860
Bse3DI GCAATG 3 cut(s) 78, 643, 1945
BseBI CCWGG 2 cut(s) 179, 1545
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 1323
BseGI GGATG 7 cut(s) 331, 471, 1230, 1259, 1297, 1495, 1612
BseLI CCNNNNNNNGG 2 cut(s) 769, 1479
BseMI GCAATG 3 cut(s) 78, 643, 1945
BseMII CTCAG 4 cut(s) 249, 536, 914, 1372
BseNI ACTGG 5 cut(s) 424, 1040, 1551, 1671, 1860
BseRI GAGGAG 3 cut(s) 401, 1445, 1542
BseXI GCAGC 3 cut(s) 27, 558, 1390
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 1391
Bsh1236I CGCG 1 cut(s) 1866
BshFI GGCC 4 cut(s) 177, 408, 1056, 1415
BshVI ATCGAT 1 cut(s) 648
BsiHKAI GWGCWC 3 cut(s) 186, 1733, 1798
BsiSI CCGG 2 cut(s) 85, 1053
BslFI GGGAC 3 cut(s) 406, 635, 1046
BslI CCNNNNNNNGG 2 cut(s) 769, 1479
BsmAI GTCTC 2 cut(s) 1657, 1887
BsmFI GGGAC 3 cut(s) 406, 635, 1046
BsmI GAATGC 1 cut(s) 1162
BsnI GGCC 4 cut(s) 177, 408, 1056, 1415
Bso31I GGTCTC 2 cut(s) 1657, 1887
Bsp1286I GDGCHC 3 cut(s) 186, 1733, 1798
Bsp1407I TGTACA 1 cut(s) 1309
Bsp143I GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
Bsp19I CCATGG 1 cut(s) 1323
BspACI CCGC 6 cut(s) 12, 174, 366, 574, 666, 1281
BspANI GGCC 4 cut(s) 177, 408, 1056, 1415
BspCNI CTCAG 4 cut(s) 250, 535, 915, 1371
BspDI ATCGAT 1 cut(s) 648
BspFNI CGCG 1 cut(s) 1866
BspHI TCATGA 3 cut(s) 592, 1168, 1579
BspLI GGNNCC 2 cut(s) 1549, 1927
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 3 cut(s) 337, 1542, 1555
BspQI GCTCTTC 1 cut(s) 656
BspTI CTTAAG 1 cut(s) 1819
BspTNI GGTCTC 2 cut(s) 1657, 1887
BsrBI CCGCTC 1 cut(s) 666
BsrDI GCAATG 3 cut(s) 78, 643, 1945
BsrGI TGTACA 1 cut(s) 1309
BsrI ACTGG 5 cut(s) 424, 1040, 1551, 1671, 1860
BssECI CCNNGG 1 cut(s) 1323
BssMI GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
BssT1I CCWWGG 1 cut(s) 1323
Bst2UI CCWGG 2 cut(s) 179, 1545
Bst4CI ACNGT 5 cut(s) 764, 1043, 1152, 1379, 1904
Bst6I CTCTTC 6 cut(s) 313, 656, 1179, 1519, 1638, 1707
BstAFI CTTAAG 1 cut(s) 1819
BstAUI TGTACA 1 cut(s) 1309
BstC8I GCNNGC 3 cut(s) 186, 681, 1283
BstDEI CTNAG 6 cut(s) 258, 522, 923, 1144, 1270, 1358
BstDSI CCRYGG 1 cut(s) 1323
BstF5I GGATG 7 cut(s) 331, 471, 1230, 1259, 1297, 1495, 1612
BstFNI CGCG 1 cut(s) 1866
BstHHI GCGC 2 cut(s) 298, 1500
BstKTI GATC 8 cut(s) 138, 345, 462, 648, 1050, 1137, 1267, 1550
BstMAI GTCTC 2 cut(s) 1657, 1887
BstMBI GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
BstMWI GCNNNNNNNGC 3 cut(s) 685, 1412, 1836
BstNI CCWGG 2 cut(s) 179, 1545
BstNSI RCATGY 1 cut(s) 961
BstSCI CCNGG 2 cut(s) 177, 1543
BstSFI CTRYAG 1 cut(s) 282
BstUI CGCG 1 cut(s) 1866
BstV1I GCAGC 3 cut(s) 27, 558, 1390
BstV2I GAAGAC 2 cut(s) 991, 1440
BstX2I RGATCY 1 cut(s) 1547
BstYI RGATCY 1 cut(s) 1547
Bsu15I ATCGAT 1 cut(s) 648
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 4 cut(s) 177, 408, 1056, 1415
BsuTUI ATCGAT 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 1323
BtgZI GCGATG 2 cut(s) 656, 838
BtsCI GGATG 7 cut(s) 331, 471, 1230, 1259, 1297, 1495, 1612
BtsIMutI CAGTG 2 cut(s) 548, 1366
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 3 cut(s) 186, 681, 1283
CaiI CAGNNNCTG 1 cut(s) 430
CciI TCATGA 3 cut(s) 592, 1168, 1579
CfoI GCGC 2 cut(s) 298, 1500
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 1 cut(s) 403
Csp6I GTAC 4 cut(s) 353, 469, 1222, 1310
CviQI GTAC 4 cut(s) 353, 469, 1222, 1310
DdeI CTNAG 6 cut(s) 258, 522, 923, 1144, 1270, 1358
DpnI GATC 8 cut(s) 137, 344, 461, 647, 1049, 1136, 1266, 1549
DpnII GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
DraI TTTAAA 1 cut(s) 1204
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 6 cut(s) 313, 656, 1179, 1519, 1638, 1707
EarI CTCTTC 6 cut(s) 313, 656, 1179, 1519, 1638, 1707
Ecl136II GAGCTC 2 cut(s) 1731, 1796
Eco130I CCWWGG 1 cut(s) 1323
Eco24I GRGCYC 2 cut(s) 1733, 1798
Eco31I GGTCTC 2 cut(s) 1657, 1887
Eco53kI GAGCTC 2 cut(s) 1731, 1796
EcoICRI GAGCTC 2 cut(s) 1731, 1796
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 177, 1543
EcoT14I CCWWGG 1 cut(s) 1323
EcoT22I ATGCAT 2 cut(s) 1068, 1259
EcoT38I GRGCYC 2 cut(s) 1733, 1798
ErhI CCWWGG 1 cut(s) 1323
FaqI GGGAC 3 cut(s) 406, 635, 1046
FauI CCCGC 3 cut(s) 567, 659, 1274
FauNDI CATATG 2 cut(s) 300, 748
FbaI TGATCA 2 cut(s) 135, 459
Fnu4HI GCNGC 6 cut(s) 13, 16, 175, 367, 572, 1404
FokI GGATG 7 cut(s) 338, 478, 1217, 1266, 1304, 1502, 1619
FriOI GRGCYC 2 cut(s) 1733, 1798
Fsp4HI GCNGC 6 cut(s) 13, 16, 175, 367, 572, 1404
FspAI RTGCGCAY 1 cut(s) 297
FspBI CTAG 3 cut(s) 1178, 1656, 1785
FspI TGCGCA 2 cut(s) 297, 1499
GlaI GCGC 2 cut(s) 297, 1499
GluI GCNGC 6 cut(s) 13, 16, 175, 367, 572, 1404
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 200, 1109
HaeIII GGCC 4 cut(s) 177, 408, 1056, 1415
HapII CCGG 2 cut(s) 85, 1053
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 298, 1500
Hin6I GCGC 2 cut(s) 296, 1498
HinP1I GCGC 2 cut(s) 296, 1498
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 5 cut(s) 268, 811, 1436, 1540, 1690
HpaII CCGG 2 cut(s) 85, 1053
HphI GGTGA 2 cut(s) 752, 1391
Hpy166II GTNNAC 4 cut(s) 874, 974, 1567, 1870
Hpy188I TCNGA 6 cut(s) 79, 259, 475, 525, 768, 1508
Hpy188III TCNNGA 9 cut(s) 58, 463, 593, 808, 1088, 1169, 1430, 1580, 1703
Hpy8I GTNNAC 4 cut(s) 874, 974, 1567, 1870
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 9 cut(s) 56, 235, 763, 872, 1166, 1405, 1567, 1664, 1751
HpyCH4III ACNGT 5 cut(s) 764, 1043, 1152, 1379, 1904
HpyF10VI GCNNNNNNNGC 3 cut(s) 685, 1412, 1836
HpyF3I CTNAG 6 cut(s) 258, 522, 923, 1144, 1270, 1358
HspAI GCGC 2 cut(s) 296, 1498
Ksp22I TGATCA 2 cut(s) 135, 459
Kzo9I GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 6 cut(s) 181, 475, 1432, 1793, 1801, 1937
Lsp1109I GCAGC 3 cut(s) 27, 558, 1390
LweI GCATC 4 cut(s) 600, 811, 1244, 1285
MaeI CTAG 3 cut(s) 1178, 1656, 1785
MaeIII GTNAC 3 cut(s) 121, 721, 1445
MalI GATC 8 cut(s) 137, 344, 461, 647, 1049, 1136, 1266, 1549
MbiI CCGCTC 1 cut(s) 666
MboI GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
MfeI CAATTG 3 cut(s) 1286, 1389, 1873
MflI RGATCY 1 cut(s) 1547
MhlI GDGCHC 3 cut(s) 186, 1733, 1798
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 9 cut(s) 207, 335, 534, 544, 1239, 1286, 1389, 1583, 1873
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 2 cut(s) 1430, 1684
MmeI TCCRAC 1 cut(s) 255
Mox20I TGGCCA 1 cut(s) 408
Mph1103I ATGCAT 2 cut(s) 1068, 1259
MscI TGGCCA 1 cut(s) 408
MseI TTAA 5 cut(s) 918, 1203, 1511, 1611, 1820
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 1819
MspI CCGG 2 cut(s) 85, 1053
MspR9I CCNGG 2 cut(s) 179, 1545
MunI CAATTG 3 cut(s) 1286, 1389, 1873
Mva1269I GAATGC 1 cut(s) 1162
MvaI CCWGG 2 cut(s) 179, 1545
MvnI CGCG 1 cut(s) 1866
MwoI GCNNNNNNNGC 3 cut(s) 685, 1412, 1836
NcoI CCATGG 1 cut(s) 1323
NdeI CATATG 2 cut(s) 300, 748
NdeII GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
NlaIV GGNNCC 2 cut(s) 1549, 1927
NmeAIII GCCGAG 1 cut(s) 1904
NsbI TGCGCA 2 cut(s) 297, 1499
NsiI ATGCAT 2 cut(s) 1068, 1259
NspI RCATGY 1 cut(s) 961
PagI TCATGA 3 cut(s) 592, 1168, 1579
PciI ACATGT 1 cut(s) 957
PciSI GCTCTTC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 1 cut(s) 638
PctI GAATGC 1 cut(s) 1162
PfeI GAWTC 3 cut(s) 268, 811, 1540
PfoI TCCNGGA 1 cut(s) 1543
PkrI GCNGC 6 cut(s) 14, 17, 176, 368, 573, 1405
PleI GAGTC 2 cut(s) 1430, 1684
PpsI GAGTC 2 cut(s) 1430, 1684
PscI ACATGT 1 cut(s) 957
PshBI ATTAAT 1 cut(s) 1511
PsiI TTATAA 1 cut(s) 1020
Psp124BI GAGCTC 2 cut(s) 1733, 1798
Psp6I CCWGG 2 cut(s) 177, 1543
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 2 cut(s) 177, 1543
PspN4I GGNNCC 2 cut(s) 1549, 1927
PstNI CAGNNNCTG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 1547
RsaI GTAC 4 cut(s) 354, 470, 1223, 1311
RsaNI GTAC 4 cut(s) 353, 469, 1222, 1310
SacI GAGCTC 2 cut(s) 1733, 1798
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 5 cut(s) 918, 1203, 1511, 1611, 1820
SatI GCNGC 6 cut(s) 13, 16, 175, 367, 572, 1404
Sau3AI GATC 8 cut(s) 135, 342, 459, 645, 1047, 1134, 1264, 1547
SchI GAGTC 2 cut(s) 1430, 1684
ScrFI CCNGG 2 cut(s) 179, 1545
SduI GDGCHC 3 cut(s) 186, 1733, 1798
SfaNI GCATC 4 cut(s) 600, 811, 1244, 1285
SfcI CTRYAG 1 cut(s) 282
SmlI CTYRAG 3 cut(s) 1438, 1692, 1819
SmoI CTYRAG 3 cut(s) 1438, 1692, 1819
Sse9I AATT 9 cut(s) 207, 335, 534, 544, 1239, 1286, 1389, 1583, 1873
SsiI CCGC 6 cut(s) 12, 174, 366, 574, 666, 1281
SspI AATATT 2 cut(s) 798, 1465
SspMI CTAG 3 cut(s) 1178, 1656, 1785
SstI GAGCTC 2 cut(s) 1733, 1798
StyD4I CCNGG 2 cut(s) 177, 1543
StyI CCWWGG 1 cut(s) 1323
TaaI ACNGT 5 cut(s) 764, 1043, 1152, 1379, 1904
TaqI TCGA 8 cut(s) 57, 205, 333, 341, 648, 814, 905, 1623
TaqII GACCGA 1 cut(s) 184
TasI AATT 9 cut(s) 207, 335, 534, 544, 1239, 1286, 1389, 1583, 1873
TatI WGTACW 4 cut(s) 352, 468, 1221, 1309
TauI GCSGC 3 cut(s) 15, 177, 369
TfiI GAWTC 3 cut(s) 268, 811, 1540
Tru1I TTAA 5 cut(s) 918, 1203, 1511, 1611, 1820
Tru9I TTAA 5 cut(s) 918, 1203, 1511, 1611, 1820
TscAI CASTG 2 cut(s) 555, 1366
TseI GCWGC 3 cut(s) 15, 571, 1403
TspDTI ATGAA 9 cut(s) 217, 392, 719, 1121, 1185, 1532, 1568, 1596, 1793
TspGWI ACGGA 2 cut(s) 261, 1806
TspRI CASTG 2 cut(s) 555, 1366
Vha464I CTTAAG 1 cut(s) 1819
VspI ATTAAT 1 cut(s) 1511
XapI RAATTY 3 cut(s) 335, 544, 1583
XceI RCATGY 1 cut(s) 961
XcmI CCANNNNNNNNNTGG 1 cut(s) 859
XspI CTAG 3 cut(s) 1178, 1656, 1785
Zsp2I ATGCAT 2 cut(s) 1068, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.