MD11G1252400.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011251
Physical Location & Seq
Forward (+)
36481324 .. 36485064
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1252400.v1.1.491

Sequence Viewer

Length: 969 bp
ATGGCTGCCACCAGTTTCTTAGCAGCGTCACTTGTAAGAAGAGCAACCGTGGCGTTTGCTCTCTCGCATCCTCTTCTTCTGACAAGCAGCAAGCTTTCTTGCCGCAGGACCCTTATCTCCTTTCCTCTCACTCCTCGCTTAAGTTCTTCAGCTTCAGAAATATGCCATTTAGCTCAAGCTATAAAGGGGGATGTTGATGGTTTGCTTAAGGGAGTGGCAGACAAAACTGTTATTGAAGAAGTAAAACGTGTTCTCGAGATGGCTAGACGTGCATCATCGAGAAGGGAGGTTCTCCATACAAATTTTCTCACCCCTCCAGTGGTGAAGGAGTCAATGCTAGCATTGGAAAAGCTAGCTGATCTGAAAGTAGTTGTTCAAGGTGGATACCCGCAGGCTGAGCGGTGTCGGATTTCTGTAGGACATCCGGAAGGATTGACAAGTGATCCTGATGTAATTGCAGCATTGAGTATCACAGGAAACTTCGGGTTCCAGCCTTGTTCTCATGGTGATTTCCTAGGCGCAATTCTTGGTACAGGGATTTCTAGGGAGAAGCTTGGAGATATTATCTTGCAGGGGGAGAAGGGAGCTCAAGTCATTGTTGTTCCAGAACTTGTTGACTTCATCATATCATCACTCGACAAGGTTAGTAATGTGCCAGTATCTTTTAAGAGGATACCACTGATTGCTCTTGATTATGAACCGCCAAGGACTAAGTCGTTCAAAACCATAGAAGCATCAGTGAGAGTTGATGCTATAGCTAGTGCAGGATTTAAGTTATCACGGACAAAACTAGTTGATCTTATTCGTGATGGTGATGTGCGTGTGAACTGGACCCCTGTTACTAAAAATGGAGCTACACTCAAGACTGGTGATATTGTGTCGGTTAGAGGTAAAGGAAGACTAAGGATAGGAGAAATTAACCCTACGAAGAAGGGGAAATTTGCAGTTGAGCTCATTCTTTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S4

Protein Analysis

323

Amino Acids

34.75

Weight (kDa)

9.64

Isoelectric Point (pI)

25.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YlmH_RBD PF17774 154 - 227 7.1e-13 Putative RNA-binding domain in YlmH
S4 PF01479 248 - 293 1.7e-07 S4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53120 AT1G53120
fragaria_vesca FvH4_3g19840
malus_domestica MD11G1248800.v1.1 MD11G1252400.v1.1
prunus_persica Prupe.4G180500_v2.0.a1
pyrus_communis pycom11g22390
rosa_chinensis RchiOBHm_Chr5g0033281
rosa_laevigata RLG00000033463
rosa_multiflora Rmu_sc0009715.1_g000003
rosa_roxburghii Rroxscaffold_1G00015440 Rroxscaffold_1G00046700
rosa_rugosa Rorug05G0139000 Rorug05G0139100 Rorug05G0250800
rosa_samantha Rh5AG230500 Rh5BG231400 Rh5CG259400 Rh5DG236600
rosa_wichuraiana Rw5G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 400
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 4 cut(s) 103, 389, 400, 701
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 2 cut(s) 301, 938
AcuI CTGAAG 2 cut(s) 132, 138
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 1 cut(s) 319
AflII CTTAAG 2 cut(s) 139, 206
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 3 cut(s) 236, 377, 721
AhlI ACTAGT 1 cut(s) 790
AjiI CACGTC 1 cut(s) 269
Alw21I GWGCWC 2 cut(s) 589, 954
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 424
ApeKI GCWGC 4 cut(s) 5, 23, 87, 458
ApoI RAATTY 2 cut(s) 301, 938
AspA2I CCTAGG 1 cut(s) 514
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 2 cut(s) 108, 831
AsuHPI GGTGA 5 cut(s) 301, 334, 518, 824, 881
AsuNHI GCTAGC 2 cut(s) 337, 352
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 2 cut(s) 108, 831
AvrII CCTAGG 1 cut(s) 514
BanII GRGCYC 2 cut(s) 589, 954
BbsI GAAGAC 1 cut(s) 904
Bbv12I GWGCWC 2 cut(s) 589, 954
BbvI GCAGC 3 cut(s) 35, 99, 470
BccI CCATC 3 cut(s) 191, 253, 803
BciVI GTATCC 2 cut(s) 377, 666
BcuI ACTAGT 1 cut(s) 790
BfaI CTAG 7 cut(s) 264, 338, 353, 515, 543, 759, 791
BfmI CTRYAG 2 cut(s) 414, 753
BfrI CTTAAG 2 cut(s) 139, 206
BfuI GTATCC 2 cut(s) 377, 666
BisI GCNGC 5 cut(s) 6, 24, 88, 103, 459
BlnI CCTAGG 1 cut(s) 514
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 5 cut(s) 7, 25, 89, 104, 460
Bme18I GGWCC 2 cut(s) 108, 831
BmeT110I CYCGRG 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 108, 831
BmiI GGNNCC 3 cut(s) 110, 488, 833
BmsI GCATC 4 cut(s) 76, 281, 739, 743
BmtI GCTAGC 2 cut(s) 341, 356
BpiI GAAGAC 1 cut(s) 904
BplI GAGNNNNNCTC 2 cut(s) 843, 875
BpmI CTGGAG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 396
BpuEI CTTGAG 3 cut(s) 159, 573, 845
BsaJI CCNNGG 3 cut(s) 48, 514, 704
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 5 cut(s) 12, 317, 656, 833, 871
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 3 cut(s) 48, 514, 704
BseGI GGATG 3 cut(s) 67, 196, 421
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 5 cut(s) 12, 317, 656, 833, 871
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 35, 99, 470
BsgI GTGCAG 1 cut(s) 783
BsiHKAI GWGCWC 2 cut(s) 589, 954
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 589, 954
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 358, 442, 796
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 4 cut(s) 103, 389, 400, 701
BspCNI CTCAG 1 cut(s) 388
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 3 cut(s) 110, 488, 833
BspOI GCTAGC 2 cut(s) 341, 356
BspPI GGATC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 34
BspTI CTTAAG 2 cut(s) 139, 206
BsrBI CCGCTC 1 cut(s) 400
BsrI ACTGG 5 cut(s) 12, 317, 656, 833, 871
BssECI CCNNGG 3 cut(s) 48, 514, 704
BssMI GATC 3 cut(s) 358, 442, 796
BssT1I CCWWGG 2 cut(s) 514, 704
Bst4CI ACNGT 2 cut(s) 49, 229
Bst6I CTCTTC 2 cut(s) 34, 78
BstAFI CTTAAG 2 cut(s) 139, 206
BstC8I GCNNGC 4 cut(s) 92, 339, 354, 393
BstDEI CTNAG 4 cut(s) 19, 396, 711, 902
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 67, 196, 421
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 3 cut(s) 361, 445, 799
BstMBI GATC 3 cut(s) 358, 442, 796
BstMWI GCNNNNNNNGC 3 cut(s) 50, 269, 397
BstSFI CTRYAG 2 cut(s) 414, 753
BstV1I GCAGC 3 cut(s) 35, 99, 470
BstV2I GAAGAC 1 cut(s) 904
BsuI GTATCC 2 cut(s) 377, 666
BtgI CCRYGG 1 cut(s) 48
BtrI CACGTC 1 cut(s) 269
BtsCI GGATG 3 cut(s) 67, 196, 421
BtsIMutI CAGTG 3 cut(s) 324, 677, 744
Cac8I GCNNGC 4 cut(s) 92, 339, 354, 393
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 108, 831
CseI GACGC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 531
CviAII CATG 1 cut(s) 503
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 4 cut(s) 19, 396, 711, 902
DpnI GATC 3 cut(s) 360, 444, 798
DpnII GATC 3 cut(s) 358, 442, 796
Eam1104I CTCTTC 2 cut(s) 34, 78
EarI CTCTTC 2 cut(s) 34, 78
Ecl136II GAGCTC 2 cut(s) 587, 952
Eco130I CCWWGG 2 cut(s) 514, 704
Eco24I GRGCYC 2 cut(s) 589, 954
Eco47I GGWCC 2 cut(s) 108, 831
Eco53kI GAGCTC 2 cut(s) 587, 952
Eco57I CTGAAG 2 cut(s) 132, 138
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 2 cut(s) 587, 952
EcoO109I RGGNCCY 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 514, 704
EcoT38I GRGCYC 2 cut(s) 589, 954
ErhI CCWWGG 2 cut(s) 514, 704
FaeI CATG 1 cut(s) 506
FaiI YATR 8 cut(s) 163, 182, 297, 504, 626, 696, 728, 755
FatI CATG 1 cut(s) 502
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 6, 24, 88, 103, 459
FokI GGATG 3 cut(s) 54, 203, 408
FriOI GRGCYC 2 cut(s) 589, 954
Fsp4HI GCNGC 5 cut(s) 6, 24, 88, 103, 459
FspBI CTAG 7 cut(s) 264, 338, 353, 515, 543, 759, 791
GlaI GCGC 1 cut(s) 520
GluI GCNGC 5 cut(s) 6, 24, 88, 103, 459
GsuI CTGGAG 1 cut(s) 300
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 521
Hin1II CATG 1 cut(s) 506
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 2 cut(s) 92, 551
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 425
HphI GGTGA 5 cut(s) 301, 334, 518, 824, 881
Hpy166II GTNNAC 2 cut(s) 616, 826
Hpy188I TCNGA 4 cut(s) 81, 157, 363, 408
Hpy188III TCNNGA 9 cut(s) 254, 256, 279, 425, 446, 605, 689, 806, 862
Hpy8I GTNNAC 2 cut(s) 616, 826
HpyAV CCTTC 5 cut(s) 276, 319, 422, 574, 925
HpyCH4III ACNGT 2 cut(s) 49, 229
HpyCH4IV ACGT 2 cut(s) 247, 268
HpyCH4V TGCA 5 cut(s) 272, 458, 571, 764, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 269, 397
HpyF3I CTNAG 4 cut(s) 19, 396, 711, 902
HpySE526I ACGT 2 cut(s) 247, 268
Hsp92II CATG 1 cut(s) 506
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 3 cut(s) 358, 442, 796
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 584, 851
Lsp1109I GCAGC 3 cut(s) 35, 99, 470
LweI GCATC 4 cut(s) 76, 281, 739, 743
MaeI CTAG 7 cut(s) 264, 338, 353, 515, 543, 759, 791
MaeII ACGT 2 cut(s) 247, 268
MaeIII GTNAC 2 cut(s) 27, 838
MalI GATC 3 cut(s) 360, 444, 798
MbiI CCGCTC 1 cut(s) 400
MboI GATC 3 cut(s) 358, 442, 796
MboII GAAGA 7 cut(s) 51, 65, 68, 138, 248, 909, 940
MhlI GDGCHC 2 cut(s) 589, 954
MluCI AATT 5 cut(s) 301, 453, 522, 915, 938
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 7 cut(s) 81, 135, 144, 280, 324, 663, 881
MroI TCCGGA 1 cut(s) 424
MseI TTAA 5 cut(s) 140, 207, 666, 771, 918
MspCI CTTAAG 2 cut(s) 139, 206
MspI CCGG 1 cut(s) 425
MwoI GCNNNNNNNGC 3 cut(s) 50, 269, 397
NdeII GATC 3 cut(s) 358, 442, 796
NheI GCTAGC 2 cut(s) 337, 352
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 3 cut(s) 110, 488, 833
NmuCI GTSAC 1 cut(s) 27
PaeR7I CTCGAG 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 34
PflFI GACNNNGTC 1 cut(s) 712
PkrI GCNGC 5 cut(s) 7, 25, 89, 104, 460
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 108
Psp124BI GAGCTC 2 cut(s) 589, 954
Psp5II RGGWCCY 1 cut(s) 108
PspN4I GGNNCC 3 cut(s) 110, 488, 833
PspPI GGNCC 2 cut(s) 108, 831
PspPPI RGGWCCY 1 cut(s) 108
PsrI GAACNNNNNNTAC 2 cut(s) 234, 266
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SacI GAGCTC 2 cut(s) 589, 954
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 5 cut(s) 140, 207, 666, 771, 918
SatI GCNGC 5 cut(s) 6, 24, 88, 103, 459
Sau3AI GATC 3 cut(s) 358, 442, 796
Sau96I GGNCC 2 cut(s) 108, 831
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 2 cut(s) 589, 954
SfaNI GCATC 4 cut(s) 76, 281, 739, 743
SfcI CTRYAG 2 cut(s) 414, 753
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 2 cut(s) 108, 831
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 6 cut(s) 139, 174, 206, 254, 588, 860
SmoI CTYRAG 6 cut(s) 139, 174, 206, 254, 588, 860
SpeI ACTAGT 1 cut(s) 790
Sse9I AATT 5 cut(s) 301, 453, 522, 915, 938
SsiI CCGC 4 cut(s) 103, 389, 400, 701
SspMI CTAG 7 cut(s) 264, 338, 353, 515, 543, 759, 791
SstI GAGCTC 2 cut(s) 589, 954
StyI CCWWGG 2 cut(s) 514, 704
TaaI ACNGT 2 cut(s) 49, 229
TaiI ACGT 2 cut(s) 250, 271
TaqI TCGA 3 cut(s) 255, 278, 636
TasI AATT 5 cut(s) 301, 453, 522, 915, 938
TauI GCSGC 1 cut(s) 105
Tru1I TTAA 5 cut(s) 140, 207, 666, 771, 918
Tru9I TTAA 5 cut(s) 140, 207, 666, 771, 918
TscAI CASTG 3 cut(s) 324, 684, 744
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 4 cut(s) 5, 23, 87, 458
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 610, 711
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 3 cut(s) 324, 684, 744
Tth111I GACNNNGTC 1 cut(s) 712
Vha464I CTTAAG 2 cut(s) 139, 206
VpaK11BI GGWCC 2 cut(s) 108, 831
XapI RAATTY 2 cut(s) 301, 938
XhoI CTCGAG 1 cut(s) 254
XmaJI CCTAGG 1 cut(s) 514
XspI CTAG 7 cut(s) 264, 338, 353, 515, 543, 759, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.