Rorug05G0139000

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011251
Physical Location & Seq
Forward (+)
12592425 .. 12606455
14031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0139000.1

Sequence Viewer

Length: 3048 bp
ATGGCTCAAAATGCTACAAATGCTACTACGGACCCATCTGAAGTGTCGGCTTTGAACTCGATCTTCCAACAGTGGGGAGCACAGTCAGTGGCGCTGTGGAATATCAGTGGAGAGCCATGCAGTGGATCAGCCATCAATGGAACTGAATTTGAGAGTGGCCCAAATAACCCGGCCATTATATGTGATTGTACCTTTGACAATGGTATCACCTGCCATATAACCCAACTGAGAGTTTATGCTCTAGACAAAACAGGAGGGTTTCCAGAAGAGCTTCTGGCTTTGAAATATCTGAACTTTTTGAAAATAGATCAGAACTTTTTCACAGGTCCCTTACCCGCATGGATTGGCAATATGTCTGCACTCACGTTGTTGTCAATTGCCCACAATGCATTCTCTGGGCCGATCCCCAAGGAACTTGGAAATCTGAAGGACCTAAATATGCTGTCCTTTGGGTCAAATAATTTCTCTGGAACACTCCCTCCAGAACTTGGTAATCTAATCAAGCTCCAGCAACTTTACATAAACAGCTGTGGACTTACTGGTGAAATTCCTTCAACATTTGCTAACCTTCGTAACATGCAAGTCCTTTGGGCATCAGACACTCCTTTCTCTGGAAAGATACCTGATTTCATTGGGAATTGGACGAAGCTAAACTCACTGAGACTTCAAGGAAACTCTTTTGAAGGCCCAATACCAACCAATTTTTCTCAGTTGACCTCATTGAATTCTCTGCGAATCAGTGATATATACAATGGGAGCTCCTCTCTTGGTTTCATAAAAAATTTGAAGAACTTGACTGATTTAGTTCTACGAAATGCATTGATTACTGGTAGCCTCCCTTCTGATATTGCAGAATATCCAAGTTTACAGATACTGGATTTGAGTTTCAACAATTTGACAGGCCAACTCCCAAATGGCTTGTTCAACATGAGTTCTCTTACATACTTATTTCTTGGGAACAATAGTCTGTCTGGATCACTTCCTAACCAAAAGACCAGTATACTTCAGAACGTAGACTTGTCTTACAACTATTTGTCAGGGAGTCTTCCTCCATGGGTAACCTCAACAGCGCAACTGAACTTAGTGGTGAACAACTTCACCTTTGACAGTTCAAACACAACTCTTCCTGGGTTGAATTGCCTTCAGAGAAATTTTCCATGCAATAGAAATGCCCCACGATATGCAAACTTTTCAATCAAGTGTGGTGGACCAGAACTTAGAGGAAGTGATGGTATATTGTATGAAGCAGAAAACTCAACTCTTGGCCCAGCAACATTTAGTGTAACCAGTACAGAGAAATTTGCGGTAAGCAATGTGGGTATGTTTGCTGACAGAAAGAATCCAGACTATGTGGTGAATACCCTGGCACAAGTCACAGGAACAGATGTGACCCCAGAGCTTTTCCAGACCTCAAGATTGTCTCCCGGATCGTTGAGGTACTTTGGCTTGGGTCTGGAGAATGGGCCTTATACTGTAACATTGCAATTTGCAGAAACAGTTTTTTTAGATCGTGCCTTACAAACATGGAAAAGTCTTGGTCGGCGCCTATTTGATATCTATATTCAGGGGGATCTAAAATGGAAGGACTTTGACATCTCGAAGGAGGCAGGTGGAGTTTTCAGAGCTGTTGCTAGAAACTTCAATGTTAATGTGTCAGAAAATTATCTTGACATTCATCTGTTCTGGGCTGGTAAGGGGACCTGCTGCATACCCGAACAAGGTGATTACGGCCCTCTAATATCAGCAGTTAAAGTTGTTCCAGAATTTACTCCAACTGTTTCTGGGATTCCACCAACTACTCCAGGAAAGAAGAGCAAGACAGGACTAATAGTTGGTATTGCAGTTCCTCTTGGAGTTGTGGGCTTGCTGTTAGTATTTTCAGTTCTATATTTGAGGAGGAAAAAAGCAGAAAAATATGACGATGAAGACCTTCTAGCACTAGAGAACAGACCAAATACTTTCAGTTATTCTGAGTTGAAAGAAGCAACAGCAGATTTTAATCCTTCAAATAAGCTAGGAGAGGGAGGATATGGCCCTGTTTACAAGGGTACACTTTCCGATGGGAGGGTAGTGGCTGTGAAGCAACTTTCAGTGGCATCTCACCAAGGGAAGAGTCAATTTGGTGCAGAAATTGCTACTATATCTGCAGTGCAACATCGCAATCTAGTGAAATTGTATGGATGCTGTATCGAAGGAAGCCAGCGAATTTTGGTTTATGAATATCTTGAAAACAAGAGCCTTGATCAAGCACTTTTTGGAACAAATGACCTGCACCTTGACTGGCTTACCCGCTTCAATATAATGTTGGGAACAGCAAGAGGACTTGCTTATCTTCATGAGGAGTCAAGCCCAAGGATTGTGCATAGAGATGTCAAAGCCAGTAATATTTTGCTCGACGCAGAACTCTGCCCAAAAATATCAGATTTTGGATTAGCAAAGCTATATGATGATGACAAAACCCATATCAGTACCCGAGTTGCAGGGACAATAGGCTATTTGGCACCAGAGTATGCAATGCGTGGACATCTGACTGAGAAGGCTGATGTTTTCAGTTTTGGGGTTGTTGTTTTGGAGATTCTCAGTGGAAGACCAAATGCTGACAGTGATTTGGATGCTGGAAAGACTTATCTCCTTGAATGGGCTTGGACTCTACATGAAAATAACAAGACTTTGGAGTTGGTGGATCCCAGATTGACAGATTTTGATGATCAAGAAGCCATTAGGTTCATAAAAGTAGCTTTCCAATGCACACAGGGACCGCCAATGACGCGGCCATCTATGTCACGCGTGGTTGGCATGCTTTCTGGAGATATTGAAGTAGGCAGCACTGTCATGTCAAAGCCAAGTTATTTGACAGATTGGGACTATAAAGATGTAACAACAAGTAGCTTTTTGATTGATCGCGATACACCATCAACTGATAGTAAGAGTGAGATCAACCTTCAGCCTGGCAGCACAACTCGTGCTAGCACCGATATTGACCTTGCGCCATCTCCTGTGGAGGCTAATCGATCAATGGTCACTGACATTATAAGAGAAGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S4

Protein Analysis

1015

Amino Acids

111.08

Weight (kDa)

5.21

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 71 - 175 5.8e-08 Leucine-rich repeat region
LRR_14 PF23598 158 - 246 3.9e-08 Leucine-rich repeat region
Malectin PF11721 397 - 583 3.7e-37 Malectin domain
Pkinase PF00069 668 - 930 8.8e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 669 - 931 2.8e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53120 AT1G53120
fragaria_vesca FvH4_3g19840
malus_domestica MD11G1248800.v1.1 MD11G1252400.v1.1
prunus_persica Prupe.4G180500_v2.0.a1
pyrus_communis pycom11g22390
rosa_chinensis RchiOBHm_Chr5g0033281
rosa_laevigata RLG00000033463
rosa_multiflora Rmu_sc0009715.1_g000003
rosa_roxburghii Rroxscaffold_1G00015440 Rroxscaffold_1G00046700
rosa_rugosa Rorug05G0139000 Rorug05G0139100 Rorug05G0250800
rosa_samantha Rh5AG230500 Rh5BG231400 Rh5CG259400 Rh5DG236600
rosa_wichuraiana Rw5G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3032
AarI CACCTGC 2 cut(s) 218, 1598
Acc36I ACCTGC 4 cut(s) 218, 1598, 1709, 2277
AccB1I GGYRCC 2 cut(s) 1542, 2500
AccB7I CCANNNNNTGG 2 cut(s) 122, 488
AccI GTMKAC 2 cut(s) 1000, 1014
AccII CGCG 3 cut(s) 2770, 2787, 2904
AciI CCGC 5 cut(s) 336, 1304, 2290, 2759, 2770
AclWI GGATC 7 cut(s) 133, 397, 982, 1435, 1578, 2678, 2691
AcoI YGGCCR 2 cut(s) 171, 2771
AcsI RAATTY 8 cut(s) 146, 546, 724, 781, 1150, 1298, 1763, 2205
AcuI CTGAAG 5 cut(s) 60, 446, 989, 1127, 2927
AcyI GRCGYC 1 cut(s) 1543
AfaI GTAC 5 cut(s) 190, 1291, 1439, 2050, 2470
AfiI CCNNNNNNNGG 7 cut(s) 73, 122, 488, 611, 1718, 2064, 2638
AflIII ACRYGT 1 cut(s) 2785
AjnI CCWGG 4 cut(s) 1126, 1362, 1801, 2947
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AloI GAACNNNNNNTCC 2 cut(s) 463, 495
Alw21I GWGCWC 2 cut(s) 82, 761
Alw26I GTCTC 2 cut(s) 655, 1425
AlwI GGATC 7 cut(s) 133, 397, 982, 1435, 1578, 2678, 2691
AlwNI CAGNNNCTG 1 cut(s) 874
Ama87I CYCGRG 1 cut(s) 2472
ApeKI GCWGC 3 cut(s) 1704, 2823, 2952
ApoI RAATTY 8 cut(s) 146, 546, 724, 781, 1150, 1298, 1763, 2205
Asp700I GAANNNNTTC 4 cut(s) 270, 317, 1094, 1929
AspLEI GCGC 4 cut(s) 94, 1072, 1545, 2989
AsuC2I CCSGG 2 cut(s) 170, 1425
AsuHPI GGTGA 7 cut(s) 199, 554, 1090, 1099, 1366, 1733, 2093
AsuNHI GCTAGC 1 cut(s) 2966
AvaI CYCGRG 1 cut(s) 2472
AvaII GGWCC 6 cut(s) 31, 326, 430, 1208, 1698, 2756
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BamHI GGATCC 1 cut(s) 2683
BanI GGYRCC 2 cut(s) 1542, 2500
BanII GRGCYC 1 cut(s) 761
BarI GAAGNNNNNNTAC 4 cut(s) 675, 707, 823, 855
BauI CACGAG 1 cut(s) 2961
BbsI GAAGAC 3 cut(s) 1037, 1932, 2593
Bbv12I GWGCWC 2 cut(s) 82, 761
BbvI GCAGC 3 cut(s) 1691, 2835, 2964
BccI CCATC 7 cut(s) 43, 140, 1223, 2054, 2782, 2920, 2998
BceAI ACGGC 1 cut(s) 1744
BciT130I CCWGG 4 cut(s) 1128, 1364, 1803, 2949
BclI TGATCA 2 cut(s) 2242, 2707
BcnI CCSGG 2 cut(s) 170, 1425
BcoDI GTCTC 2 cut(s) 655, 1425
BfaI CTAG 7 cut(s) 242, 1632, 1934, 1940, 2015, 2165, 2967
BfmI CTRYAG 1 cut(s) 2145
BfoI RGCGCY 2 cut(s) 95, 1546
BfuAI ACCTGC 4 cut(s) 218, 1598, 1709, 2277
BisI GCNGC 4 cut(s) 1705, 2771, 2824, 2953
BlsI GCNGC 4 cut(s) 1706, 2772, 2825, 2954
Bme1390I CCNGG 6 cut(s) 170, 1128, 1364, 1425, 1803, 2949
Bme18I GGWCC 6 cut(s) 31, 326, 430, 1208, 1698, 2756
BmeT110I CYCGRG 1 cut(s) 2472
BmiI GGNNCC 7 cut(s) 33, 328, 1544, 1699, 2502, 2685, 2757
BmrFI CCNGG 6 cut(s) 170, 1128, 1364, 1425, 1803, 2949
BmsI GCATC 4 cut(s) 602, 2105, 2171, 2602
BmtI GCTAGC 1 cut(s) 2970
BpiI GAAGAC 3 cut(s) 1037, 1932, 2593
BplI GAGNNNNNCTC 4 cut(s) 748, 780, 1033, 1065
BpmI CTGGAG 5 cut(s) 465, 491, 1475, 1785, 2826
BpuEI CTTGAG 1 cut(s) 1396
BpuMI CCSGG 2 cut(s) 170, 1425
Bsa29I ATCGAT 1 cut(s) 3010
BsaBI GATNNNNATC 1 cut(s) 1998
BsaHI GRCGYC 1 cut(s) 1543
BsaJI CCNNGG 6 cut(s) 408, 1052, 1127, 1362, 2104, 2351
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 7 cut(s) 73, 122, 488, 611, 1718, 2064, 2638
Bse1I ACTGG 7 cut(s) 544, 832, 879, 996, 1287, 2285, 2379
Bse3DI GCAATG 3 cut(s) 1318, 1478, 2520
Bse8I GATNNNNATC 1 cut(s) 1998
BseBI CCWGG 4 cut(s) 1128, 1364, 1803, 2949
BseCI ATCGAT 1 cut(s) 3010
BseDI CCNNGG 6 cut(s) 408, 1052, 1127, 1362, 2104, 2351
BseGI GGATG 2 cut(s) 2186, 2617
BseJI GATNNNNATC 1 cut(s) 1998
BseLI CCNNNNNNNGG 7 cut(s) 73, 122, 488, 611, 1718, 2064, 2638
BseMI GCAATG 3 cut(s) 1318, 1478, 2520
BseMII CTCAG 6 cut(s) 218, 650, 722, 1962, 2523, 2593
BseNI ACTGG 7 cut(s) 544, 832, 879, 996, 1287, 2285, 2379
BseRI GAGGAG 3 cut(s) 751, 1909, 2354
BseXI GCAGC 3 cut(s) 1691, 2835, 2964
BseYI CCCAGC 1 cut(s) 1267
BsgI GTGCAG 3 cut(s) 342, 2145, 2255
Bsh1236I CGCG 3 cut(s) 2770, 2787, 2904
BshNI GGYRCC 2 cut(s) 1542, 2500
BshVI ATCGAT 1 cut(s) 3010
BsiHKAI GWGCWC 2 cut(s) 82, 761
BsiHKCI CYCGRG 1 cut(s) 2472
BsiSI CCGG 2 cut(s) 170, 1425
BslFI GGGAC 5 cut(s) 312, 1711, 2497, 2769, 2876
BslI CCNNNNNNNGG 7 cut(s) 73, 122, 488, 611, 1718, 2064, 2638
BsmAI GTCTC 2 cut(s) 655, 1425
BsmFI GGGAC 5 cut(s) 312, 1711, 2497, 2769, 2876
BsmI GAATGC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 2472
Bsp1286I GDGCHC 2 cut(s) 82, 761
Bsp19I CCATGG 1 cut(s) 1052
Bsp68I TCGCGA 1 cut(s) 2904
BspACI CCGC 5 cut(s) 336, 1304, 2290, 2759, 2770
BspCNI CTCAG 6 cut(s) 219, 651, 721, 1963, 2524, 2592
BspDI ATCGAT 1 cut(s) 3010
BspFNI CGCG 3 cut(s) 2770, 2787, 2904
BspHI TCATGA 1 cut(s) 2335
BspLI GGNNCC 7 cut(s) 33, 328, 1544, 1699, 2502, 2685, 2757
BspMAI CTGCAG 1 cut(s) 2149
BspMI ACCTGC 4 cut(s) 218, 1598, 1709, 2277
BspOI GCTAGC 1 cut(s) 2970
BspPI GGATC 7 cut(s) 133, 397, 982, 1435, 1578, 2678, 2691
BspQI GCTCTTC 2 cut(s) 261, 1805
BspT107I GGYRCC 2 cut(s) 1542, 2500
BsrDI GCAATG 3 cut(s) 1318, 1478, 2520
BsrI ACTGG 7 cut(s) 544, 832, 879, 996, 1287, 2285, 2379
BssECI CCNNGG 6 cut(s) 408, 1052, 1127, 1362, 2104, 2351
BssNAI GTATAC 1 cut(s) 1001
BssNI GRCGYC 1 cut(s) 1543
BssSI CACGAG 1 cut(s) 2961
BssT1I CCWWGG 4 cut(s) 408, 1052, 2104, 2351
Bst1107I GTATAC 1 cut(s) 1001
Bst2BI CACGAG 1 cut(s) 2961
Bst2UI CCWGG 4 cut(s) 1128, 1364, 1803, 2949
Bst4CI ACNGT 8 cut(s) 72, 84, 1109, 1474, 1498, 1777, 2603, 2830
Bst6I CTCTTC 4 cut(s) 261, 1128, 1805, 2105
BstACI GRCGYC 1 cut(s) 1543
BstAPI GCANNNNNTGC 1 cut(s) 2132
BstC8I GCNNGC 4 cut(s) 1865, 2201, 2798, 2968
BstDEI CTNAG 8 cut(s) 227, 659, 708, 1081, 1217, 1971, 2532, 2579
BstDSI CCRYGG 1 cut(s) 1052
BstEII GGTNACC 1 cut(s) 1057
BstF5I GGATG 2 cut(s) 2186, 2617
BstFNI CGCG 3 cut(s) 2770, 2787, 2904
BstH2I RGCGCY 2 cut(s) 95, 1546
BstHHI GCGC 4 cut(s) 94, 1072, 1545, 2989
BstMAI GTCTC 2 cut(s) 655, 1425
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 386, 2132, 2767, 2793
BstNI CCWGG 4 cut(s) 1128, 1364, 1803, 2949
BstNSI RCATGY 2 cut(s) 580, 2800
BstPI GGTNACC 1 cut(s) 1057
BstSCI CCNGG 6 cut(s) 168, 1126, 1362, 1423, 1801, 2947
BstSFI CTRYAG 1 cut(s) 2145
BstUI CGCG 3 cut(s) 2770, 2787, 2904
BstV1I GCAGC 3 cut(s) 1691, 2835, 2964
BstV2I GAAGAC 3 cut(s) 1037, 1932, 2593
BstX2I RGATCY 2 cut(s) 1570, 2683
BstYI RGATCY 2 cut(s) 1570, 2683
BstZ17I GTATAC 1 cut(s) 1001
Bsu15I ATCGAT 1 cut(s) 3010
BsuTUI ATCGAT 1 cut(s) 3010
BtgI CCRYGG 1 cut(s) 1052
BtgZI GCGATG 1 cut(s) 2141
BtsCI GGATG 2 cut(s) 2186, 2617
BtsI GCAGTG 2 cut(s) 127, 2154
BtuMI TCGCGA 1 cut(s) 2904
BveI ACCTGC 4 cut(s) 218, 1598, 1709, 2277
Cac8I GCNNGC 4 cut(s) 1865, 2201, 2798, 2968
CaiI CAGNNNCTG 1 cut(s) 874
CciI TCATGA 1 cut(s) 2335
CfoI GCGC 4 cut(s) 94, 1072, 1545, 2989
ClaI ATCGAT 1 cut(s) 3010
CseI GACGC 2 cut(s) 2405, 2776
Csp6I GTAC 5 cut(s) 189, 1290, 1438, 2049, 2469
CspCI CAANNNNNGTGG 2 cut(s) 1186, 1221
CviQI GTAC 5 cut(s) 189, 1290, 1438, 2049, 2469
DdeI CTNAG 8 cut(s) 227, 659, 708, 1081, 1217, 1971, 2532, 2579
DinI GGCGCC 1 cut(s) 1544
EaeI YGGCCR 2 cut(s) 171, 2771
Eam1104I CTCTTC 4 cut(s) 261, 1128, 1805, 2105
EarI CTCTTC 4 cut(s) 261, 1128, 1805, 2105
Ecl136II GAGCTC 1 cut(s) 759
Eco130I CCWWGG 4 cut(s) 408, 1052, 2104, 2351
Eco24I GRGCYC 1 cut(s) 761
Eco32I GATATC 1 cut(s) 1555
Eco47I GGWCC 6 cut(s) 31, 326, 430, 1208, 1698, 2756
Eco53kI GAGCTC 1 cut(s) 759
Eco57I CTGAAG 5 cut(s) 60, 446, 989, 1127, 2927
Eco88I CYCGRG 1 cut(s) 2472
Eco91I GGTNACC 1 cut(s) 1057
EcoICRI GAGCTC 1 cut(s) 759
EcoO109I RGGNCCY 3 cut(s) 326, 430, 1698
EcoO65I GGTNACC 1 cut(s) 1057
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 4 cut(s) 1126, 1362, 1801, 2947
EcoRV GATATC 1 cut(s) 1555
EcoT14I CCWWGG 4 cut(s) 408, 1052, 2104, 2351
EcoT22I ATGCAT 2 cut(s) 391, 820
EcoT38I GRGCYC 1 cut(s) 761
EgeI GGCGCC 1 cut(s) 1544
EheI GGCGCC 1 cut(s) 1544
ErhI CCWWGG 4 cut(s) 408, 1052, 2104, 2351
FaqI GGGAC 5 cut(s) 312, 1711, 2497, 2769, 2876
FauI CCCGC 2 cut(s) 343, 2297
FbaI TGATCA 2 cut(s) 2242, 2707
FblI GTMKAC 2 cut(s) 1000, 1014
Fnu4HI GCNGC 4 cut(s) 1705, 2771, 2824, 2953
FokI GGATG 2 cut(s) 2193, 2624
FriOI GRGCYC 1 cut(s) 761
Fsp4HI GCNGC 4 cut(s) 1705, 2771, 2824, 2953
FspBI CTAG 7 cut(s) 242, 1632, 1934, 1940, 2015, 2165, 2967
GlaI GCGC 4 cut(s) 93, 1071, 1544, 2988
GluI GCNGC 4 cut(s) 1705, 2771, 2824, 2953
GsaI CCCAGC 1 cut(s) 1271
GsuI CTGGAG 5 cut(s) 465, 491, 1475, 1785, 2826
HaeII RGCGCY 2 cut(s) 95, 1546
HapII CCGG 2 cut(s) 170, 1425
HgaI GACGC 2 cut(s) 2405, 2776
HhaI GCGC 4 cut(s) 94, 1072, 1545, 2989
Hin1I GRCGYC 1 cut(s) 1543
Hin6I GCGC 4 cut(s) 92, 1070, 1543, 2987
HinP1I GCGC 4 cut(s) 92, 1070, 1543, 2987
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HinfI GANTC 8 cut(s) 735, 1042, 1339, 1786, 2113, 2342, 2575, 2647
HpaII CCGG 2 cut(s) 170, 1425
HphI GGTGA 7 cut(s) 199, 554, 1090, 1099, 1366, 1733, 2093
Hpy99I CGWCG 1 cut(s) 2399
HpyCH4III ACNGT 8 cut(s) 72, 84, 1109, 1474, 1498, 1777, 2603, 2830
HpyCH4IV ACGT 2 cut(s) 365, 1011
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 386, 2132, 2767, 2793
HpyF3I CTNAG 8 cut(s) 227, 659, 708, 1081, 1217, 1971, 2532, 2579
HpySE526I ACGT 2 cut(s) 365, 1011
Hsp92I GRCGYC 1 cut(s) 1543
HspAI GCGC 4 cut(s) 92, 1070, 1543, 2987
KasI GGCGCC 1 cut(s) 1542
Ksp22I TGATCA 2 cut(s) 2242, 2707
LguI GCTCTTC 2 cut(s) 261, 1805
LmnI GCTCC 4 cut(s) 77, 510, 756, 764
Lsp1109I GCAGC 3 cut(s) 1691, 2835, 2964
LweI GCATC 4 cut(s) 602, 2105, 2171, 2602
MaeI CTAG 7 cut(s) 242, 1632, 1934, 1940, 2015, 2165, 2967
MaeII ACGT 2 cut(s) 365, 1011
MaeIII GTNAC 9 cut(s) 572, 1057, 1282, 1372, 1387, 1474, 2781, 2875, 3019
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 2 cut(s) 1570, 2683
MhlI GDGCHC 2 cut(s) 82, 761
MluI ACGCGT 1 cut(s) 2785
Mly113I GGCGCC 1 cut(s) 1543
MlyI GAGTC 4 cut(s) 1051, 2122, 2351, 2641
MmeI TCCRAC 2 cut(s) 91, 1796
Mph1103I ATGCAT 2 cut(s) 391, 820
MroXI GAANNNNTTC 4 cut(s) 270, 317, 1094, 1929
MseI TTAA 3 cut(s) 1647, 1749, 1998
MslI CAYNNNNRTG 2 cut(s) 2367, 2831
MspA1I CMGCKG 1 cut(s) 528
MspI CCGG 2 cut(s) 170, 1425
MspR9I CCNGG 6 cut(s) 170, 1128, 1364, 1425, 1803, 2949
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 4 cut(s) 1128, 1364, 1803, 2949
MvnI CGCG 3 cut(s) 2770, 2787, 2904
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 386, 2132, 2767, 2793
NarI GGCGCC 1 cut(s) 1543
NciI CCSGG 2 cut(s) 170, 1425
NcoI CCATGG 1 cut(s) 1052
NheI GCTAGC 1 cut(s) 2966
NlaIV GGNNCC 7 cut(s) 33, 328, 1544, 1699, 2502, 2685, 2757
NmuCI GTSAC 4 cut(s) 1372, 1387, 2781, 3019
NruI TCGCGA 1 cut(s) 2904
NsiI ATGCAT 2 cut(s) 391, 820
NspI RCATGY 2 cut(s) 580, 2800
PaeI GCATGC 1 cut(s) 2800
PagI TCATGA 1 cut(s) 2335
PaqCI CACCTGC 2 cut(s) 218, 1598
PciSI GCTCTTC 2 cut(s) 261, 1805
PctI GAATGC 1 cut(s) 389
PdmI GAANNNNTTC 4 cut(s) 270, 317, 1094, 1929
PfeI GAWTC 4 cut(s) 735, 1339, 1786, 2575
PflMI CCANNNNNTGG 2 cut(s) 122, 488
PfoI TCCNGGA 2 cut(s) 1423, 1801
PkrI GCNGC 4 cut(s) 1706, 2772, 2825, 2954
PleI GAGTC 4 cut(s) 1050, 2121, 2350, 2641
PluTI GGCGCC 1 cut(s) 1546
PpsI GAGTC 4 cut(s) 1050, 2121, 2350, 2641
PpuMI RGGWCCY 3 cut(s) 326, 430, 1698
PsiI TTATAA 1 cut(s) 3032
Psp124BI GAGCTC 1 cut(s) 761
Psp5II RGGWCCY 3 cut(s) 326, 430, 1698
Psp6I CCWGG 4 cut(s) 1126, 1362, 1801, 2947
PspEI GGTNACC 1 cut(s) 1057
PspFI CCCAGC 1 cut(s) 1267
PspGI CCWGG 4 cut(s) 1126, 1362, 1801, 2947
PspN4I GGNNCC 7 cut(s) 33, 328, 1544, 1699, 2502, 2685, 2757
PspPPI RGGWCCY 3 cut(s) 326, 430, 1698
PsrI GAACNNNNNNTAC 2 cut(s) 1866, 1898
PstI CTGCAG 1 cut(s) 2149
PstNI CAGNNNCTG 1 cut(s) 874
PsuI RGATCY 2 cut(s) 1570, 2683
PvuII CAGCTG 1 cut(s) 528
RruI TCGCGA 1 cut(s) 2904
RsaI GTAC 5 cut(s) 190, 1291, 1439, 2050, 2470
RsaNI GTAC 5 cut(s) 189, 1290, 1438, 2049, 2469
RseI CAYNNNNRTG 2 cut(s) 2367, 2831
SacI GAGCTC 1 cut(s) 761
SapI GCTCTTC 2 cut(s) 261, 1805
SaqAI TTAA 3 cut(s) 1647, 1749, 1998
SatI GCNGC 4 cut(s) 1705, 2771, 2824, 2953
SchI GAGTC 4 cut(s) 1051, 2122, 2351, 2641
ScrFI CCNGG 6 cut(s) 170, 1128, 1364, 1425, 1803, 2949
SduI GDGCHC 2 cut(s) 82, 761
SfaNI GCATC 4 cut(s) 602, 2105, 2171, 2602
SfcI CTRYAG 1 cut(s) 2145
SfoI GGCGCC 1 cut(s) 1544
SinI GGWCC 6 cut(s) 31, 326, 430, 1208, 1698, 2756
SmiMI CAYNNNNRTG 2 cut(s) 2367, 2831
SmlI CTYRAG 1 cut(s) 1411
SmoI CTYRAG 1 cut(s) 1411
SphI GCATGC 1 cut(s) 2800
SsiI CCGC 5 cut(s) 336, 1304, 2290, 2759, 2770
SspDI GGCGCC 1 cut(s) 1542
SspI AATATT 1 cut(s) 2386
SspMI CTAG 7 cut(s) 242, 1632, 1934, 1940, 2015, 2165, 2967
SstI GAGCTC 1 cut(s) 761
StyD4I CCNGG 6 cut(s) 168, 1126, 1362, 1423, 1801, 2947
StyI CCWWGG 4 cut(s) 408, 1052, 2104, 2351
TaaI ACNGT 8 cut(s) 72, 84, 1109, 1474, 1498, 1777, 2603, 2830
TaiI ACGT 2 cut(s) 368, 1014
TaqI TCGA 5 cut(s) 59, 1598, 2190, 2394, 3010
TatI WGTACW 1 cut(s) 1289
TauI GCSGC 1 cut(s) 2773
TfiI GAWTC 4 cut(s) 735, 1339, 1786, 2575
Tru1I TTAA 3 cut(s) 1647, 1749, 1998
Tru9I TTAA 3 cut(s) 1647, 1749, 1998
TseFI GTSAC 4 cut(s) 1372, 1387, 2781, 3019
TseI GCWGC 3 cut(s) 1704, 2823, 2952
Tsp45I GTSAC 4 cut(s) 1372, 1387, 2781, 3019
TspDTI ATGAA 9 cut(s) 619, 763, 1257, 1664, 1938, 2232, 2324, 2670, 2716
TspGWI ACGGA 1 cut(s) 44
Van91I CCANNNNNTGG 2 cut(s) 122, 488
VpaK11BI GGWCC 6 cut(s) 31, 326, 430, 1208, 1698, 2756
XapI RAATTY 8 cut(s) 146, 546, 724, 781, 1150, 1298, 1763, 2205
XbaI TCTAGA 1 cut(s) 241
XceI RCATGY 2 cut(s) 580, 2800
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XmiI GTMKAC 2 cut(s) 1000, 1014
XmnI GAANNNNTTC 4 cut(s) 270, 317, 1094, 1929
XspI CTAG 7 cut(s) 242, 1632, 1934, 1940, 2015, 2165, 2967
Zsp2I ATGCAT 2 cut(s) 391, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.