Rorug05G0139100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011251
Physical Location & Seq
Forward (+)
12629897 .. 12655636
25740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0139100.1

Sequence Viewer

Length: 3054 bp
ATGAAGCAAGTGGCTACCTTCTCTTTCGGTAGAATATGTGATGACTACTTCTTCTTCTGTCTTATCTTCTTCCTGGGTTGCTTCTGGTTCCATGCTTCCACTGCCCAAAATGCTAATACGGACCCAACCGAAGTGGCGGCGTTGAACTCAATATTACTACAATGGGACGCGCCAGCGGTGCCTCTGTGGAACATCAGTGGAGAGCCATGCAGTGGATCGGCCATCAATGGCACCAACTTCGTGGACCCAGACAATAACCCAGCCATCATTTGCGACTGTAGTTTTGACAGCAGCACCACCTGCCATATCACTCAATTGAGAGTTTATGCTCTGGACAAAACAGGAGGGTTACCTGAAGAACTTCTGGCTTTGAAATATCTTACTCTTTTCAAAATCGATCAGAACTTTTTCACCGGTCCCCTACCAGCATGGATTGGCAATATGTCTGAGTTGACGGAGTTGTCGATTGCCCAGAATAACTTCTATGGACCCATCCCCAAGGAGCTTGGAAACCTTAAGAAACTAAATCTGCTGTCTTTTGGAATAAATAATTTCTCTGGAACACTGCCTCCAGAACTTGGTAATTTAGTCAATCTCGAACAGCTTTACATAGACAGCTGTGGACTTGGTGGTGAAATTCCTAAAACATTTGCTAAACTTCAAAAAATGCGAATCCTATGGGCATCAGACAGTCCTTTCTCAGGAAAGATACCGGATTTCATAGGGAATTGGACAAAGCTAGCCACCTTGAGATTTCAAGGGAATTCTTTTGAAGGCCCAATACCAAGCAGTTTTTCTCAGTTGATCTCAATGAATTCTCTACGAATCAGTGATCTCTATAATGTGAGCTCCTCTCTTGACTTCATAAGGAATTTGAAGAACTTGACTGATTTAGTTCTCCGAAATGCATTAGTCACTGGCCGCATCCCTTCTGATATTAGAGAATATCAAAATTTAAATATACTGGATCTGGGTTTCAACAATATAACAGGTCAACTCCCAAGTGACTTGTTCGACATGAGTTCTCTCGTATCCTTATTTCTTGGAAATAATAGTTTGTCTGGAGTTCTGCCTAGCCAAAAGAGTGATAGTCTTCAAACCATAGATTTATCTTATAACTATTTATCAGGAAGTCTTCCCCCATGGGTAACCACAGTATCGCAACTGAACTTGGTGGTCAACAACTTCACTTTTAACGAAAGTTCAGAAATAATGCTTCCTGGATTGAATTGCCTTCAACGAAATTTTCCATGCAATAGAAATCCCCCGCGCTATGCAAACTTCTCAATCAACTGTGGAGGACCAGACATGAGAGGAAGTGATGGCATATTATATGAGGCAGAAAACTCAACCCTTGGCCCAGCAACATATAATGTAACCAGTACAGAGAAATGGGCTGTTAGCAATGTGGGTTTGTTTGCTGAGAGGAAGAATCCAAGCTATTTGTTTCCTTCCCTGGCACAGGTTACTGGGTCAGATGTGACCCCAGAGCTTTTCCAGACTTCAAGATTATCTCCAGGATCACTGAGATACTATGGCTTGGGTCTCGAGAATGGGCCTTATACTGTAAAATTACAATTTGCAGAAATGGTTTTTGATGATCGTGCATCACAAAGTTGGAAAAGTTTAGGAAGGCGAGTATTTGATATCTATATTCAGGGGCATCTAGTAGAGAAGGACTTTGACATATCCAAGGAGGCAGGTGGTGTTTTAAGAGTAGCAATGAAAAACTTCAATGTAAACGTGTCAGACAATTATGTTGAAATTCATTTGTTCTGGGCTGGTAAGGGGACCTGCTGCACACCTTACCAAGGTGATTACGGTCCACTAATAGCAACGGTCAATGCCGTTTCAGATTTTGAACCAACTGTTTCTGGGATTCCACCAACTACTCCAGGAAAGAAGAGCATGACAGGGGTGATTGTTGGTGTTGCAGTTTCTGTTGGAGTTGTGAGCTTGCTATTAATATTTGCAGTTTTATATTTGAGGAGAAAAATACCAGACAAGGATGACGATGAAGAACTTCAAGGATTAGACCCCCGACCAAATACTTTCAGTTATAGTGAGTTAAAAGCTGCAACAGGAGATTTTAATCTTTCAAATAAACTAGGGGAGGGAGGATATGGCGCCGTTTACAAGGGCATACTTTCTGAAGCGAGGTTAGTGGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGGAAGAGTCAATTTGCAGCAGAAATTGCTGCCATATCTGCAGTGCAACATCGCAATCTAGTGAAACTGTATGGATGCTGTATCGAAGGAAACCAGCGAATTTTGGTTTATGAATATCTTGAAAACAAGAGCCTTGATCAGGCACTTTTTGGAAACAACTTGCATCTTGATTGGCATACCAGATTCAATATCTTGTTGGGAACAGCAAGAGGACTTGCCTATCTTCATGAGGAGTCGAGGCCAAGGATTGTACATAGAGATGTCAAAGCCAGTAATATTTTGCTTGATGCAGACCTCTGCCCAAAAATATCAGATTTTGGACTGGCAAAGCTTTATGATGATGAGAAAACCCACATCAGCACCCGGGTTGCAGGGACAATAGGCTATTTGGCACCAGAGTATGCAATGCGTGGACATCTGACTGAAAAGGCTGATGTTTTCAGTTTTGGGGCTTGGACTCTACATGAAAATAACAAGACTTTGGAGTTGGTGGATCCCAGATTGACAGATTTTGATGATCAAGAAGCCATTAGGTTCATAAAAGTAGCTTTCCAATGCACACAGGGACCGCCAATGACGCGGCCATCTATGTCACGCGTGGTTGGCATGCTTTCTGGAGATATTGAAGTAGGCAGCACTGTCATGTCAAAGCCAAGTTATTTGACGGATTGGGACTATAAAGATGTAACAAGTAGCTTTTTGATTGATCGCGATACACCATCAACTGATAGTAAGAGTAAGCTCAACCTTCATCCCGGCAGCACAACTGGTGCTAGCACCGATATTGATCTTGCGCCATCTCCTGTGGAGGTTAATCGGTCAATGGTCACTGACATTATAAGAGAAGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S4

Protein Analysis

1017

Amino Acids

112.1

Weight (kDa)

5.24

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 187 - 275 7.3e-06 Leucine-rich repeat region
LRR_14 PF23598 266 - 353 8e-06 Leucine-rich repeat region
Malectin PF11721 428 - 612 1.3e-39 Malectin domain
PK_Tyr_Ser-Thr PF07714 698 - 885 3.7e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 698 - 886 6.4e-41 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53120 AT1G53120
fragaria_vesca FvH4_3g19840
malus_domestica MD11G1248800.v1.1 MD11G1252400.v1.1
prunus_persica Prupe.4G180500_v2.0.a1
pyrus_communis pycom11g22390
rosa_chinensis RchiOBHm_Chr5g0033281
rosa_laevigata RLG00000033463
rosa_multiflora Rmu_sc0009715.1_g000003
rosa_roxburghii Rroxscaffold_1G00015440 Rroxscaffold_1G00046700
rosa_rugosa Rorug05G0139000 Rorug05G0139100 Rorug05G0250800
rosa_samantha Rh5AG230500 Rh5BG231400 Rh5CG259400 Rh5DG236600
rosa_wichuraiana Rw5G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1116, 3038
AarI CACCTGC 2 cut(s) 308, 1691
AasI GACNNNNNNGTC 1 cut(s) 460
Acc36I ACCTGC 3 cut(s) 308, 1691, 1802
AccB1I GGYRCC 4 cut(s) 178, 230, 2126, 2590
AccB7I CCANNNNNTGG 2 cut(s) 212, 578
AccII CGCG 5 cut(s) 170, 1270, 2779, 2796, 2910
AciI CCGC 6 cut(s) 137, 176, 922, 1268, 2768, 2779
AclWI GGATC 5 cut(s) 223, 975, 1528, 2687, 2700
AcoI YGGCCR 3 cut(s) 219, 919, 2780
AcsI RAATTY 8 cut(s) 636, 763, 814, 871, 952, 1243, 1764, 2298
AcuI CTGAAG 2 cut(s) 375, 2172
AcyI GRCGYC 1 cut(s) 2127
AfaI GTAC 2 cut(s) 1384, 2451
AfiI CCNNNNNNNGG 6 cut(s) 212, 578, 701, 1462, 1811, 2338
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 2 cut(s) 1743, 2794
AgeI ACCGGT 1 cut(s) 413
AjnI CCWGG 5 cut(s) 72, 1219, 1455, 1516, 1894
AjuI GAANNNNNNNTTGG 2 cut(s) 778, 810
AloI GAACNNNNNNTCC 2 cut(s) 553, 585
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 1 cut(s) 1550
AlwI GGATC 5 cut(s) 223, 975, 1528, 2687, 2700
AlwNI CAGNNNCTG 1 cut(s) 1940
Ama87I CYCGRG 2 cut(s) 1547, 2562
AoxI GGCC 7 cut(s) 219, 775, 919, 1357, 1556, 2438, 2780
ApeKI GCWGC 7 cut(s) 291, 1797, 2075, 2216, 2228, 2832, 2958
ApoI RAATTY 8 cut(s) 636, 763, 814, 871, 952, 1243, 1764, 2298
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AseI ATTAAT 1 cut(s) 1964
AsiGI ACCGGT 1 cut(s) 413
Asp700I GAANNNNTTC 5 cut(s) 360, 407, 479, 1730, 2022
AspLEI GCGC 4 cut(s) 172, 1272, 2129, 2995
AsuC2I CCSGG 3 cut(s) 2563, 2564, 2955
AsuHPI GGTGA 5 cut(s) 403, 644, 1826, 1930, 2186
AsuNHI GCTAGC 2 cut(s) 739, 2972
AvaI CYCGRG 2 cut(s) 1547, 2562
AvaII GGWCC 8 cut(s) 121, 244, 416, 488, 1301, 1791, 1823, 2765
BaeI ACNNNNGTAYC 2 cut(s) 1140, 1173
BamHI GGATCC 1 cut(s) 2692
BanI GGYRCC 4 cut(s) 178, 230, 2126, 2590
BanII GRGCYC 1 cut(s) 851
BarI GAAGNNNNNNTAC 2 cut(s) 765, 797
BbsI GAAGAC 2 cut(s) 1085, 1127
Bbv12I GWGCWC 1 cut(s) 851
BbvI GCAGC 7 cut(s) 303, 1784, 2062, 2215, 2228, 2844, 2970
BccI CCATC 7 cut(s) 230, 272, 500, 1316, 2791, 2926, 3004
BceAI ACGGC 2 cut(s) 1832, 2114
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 5 cut(s) 74, 1221, 1457, 1518, 1896
BciVI GTATCC 1 cut(s) 1042
BclI TGATCA 2 cut(s) 2335, 2716
BcnI CCSGG 3 cut(s) 2563, 2564, 2955
BcoDI GTCTC 1 cut(s) 1550
BfaI CTAG 6 cut(s) 740, 1074, 1667, 2108, 2258, 2973
BfmI CTRYAG 2 cut(s) 277, 2238
BfoI RGCGCY 1 cut(s) 2130
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 3 cut(s) 308, 1691, 1802
BfuI GTATCC 1 cut(s) 1042
Bme1390I CCNGG 8 cut(s) 74, 1221, 1457, 1518, 1896, 2563, 2564, 2955
Bme18I GGWCC 8 cut(s) 121, 244, 416, 488, 1301, 1791, 1823, 2765
BmeT110I CYCGRG 2 cut(s) 1547, 2562
BmrFI CCNGG 8 cut(s) 74, 1221, 1457, 1518, 1896, 2563, 2564, 2955
BmrI ACTGGG 1 cut(s) 1479
BmsI GCATC 8 cut(s) 692, 933, 1616, 1672, 2198, 2264, 2371, 2476
BmtI GCTAGC 2 cut(s) 743, 2976
BmuI ACTGGG 1 cut(s) 1479
BpiI GAAGAC 2 cut(s) 1085, 1127
BplI GAGNNNNNCTC 2 cut(s) 838, 870
BpmI CTGGAG 5 cut(s) 555, 1083, 1500, 1878, 2835
BpuEI CTTGAG 1 cut(s) 769
BpuMI CCSGG 3 cut(s) 2563, 2564, 2955
Bsa29I ATCGAT 1 cut(s) 396
BsaBI GATNNNNATC 2 cut(s) 2091, 2985
BsaHI GRCGYC 1 cut(s) 2127
BsaI GGTCTC 1 cut(s) 1550
BsaWI WCCGGW 2 cut(s) 413, 712
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 578, 701, 1462, 1811, 2338
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 7 cut(s) 922, 969, 1380, 1474, 2469, 2526, 2971
Bse3DI GCAATG 3 cut(s) 1411, 1728, 2610
Bse8I GATNNNNATC 2 cut(s) 2091, 2985
BseBI CCWGG 5 cut(s) 74, 1221, 1457, 1518, 1896
BseCI ATCGAT 1 cut(s) 396
BseGI GGATG 5 cut(s) 492, 924, 2014, 2279, 2950
BseJI GATNNNNATC 2 cut(s) 2091, 2985
BseLI CCNNNNNNNGG 6 cut(s) 212, 578, 701, 1462, 1811, 2338
BseMI GCAATG 3 cut(s) 1411, 1728, 2610
BseMII CTCAG 5 cut(s) 438, 714, 812, 1413, 1517
BseNI ACTGG 7 cut(s) 922, 969, 1380, 1474, 2469, 2526, 2971
BseRI GAGGAG 3 cut(s) 841, 2002, 2444
BseXI GCAGC 7 cut(s) 303, 1784, 2062, 2215, 2228, 2844, 2970
BseYI CCCAGC 2 cut(s) 259, 1360
BsgI GTGCAG 1 cut(s) 1783
Bsh1236I CGCG 5 cut(s) 170, 1270, 2779, 2796, 2910
BshFI GGCC 7 cut(s) 221, 777, 921, 1359, 1558, 2440, 2782
BshNI GGYRCC 4 cut(s) 178, 230, 2126, 2590
BshTI ACCGGT 1 cut(s) 413
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 851
BsiHKCI CYCGRG 2 cut(s) 1547, 2562
BsiSI CCGG 4 cut(s) 414, 713, 2563, 2955
BslFI GGGAC 6 cut(s) 179, 402, 1804, 2587, 2778, 2885
BslI CCNNNNNNNGG 6 cut(s) 212, 578, 701, 1462, 1811, 2338
BsmAI GTCTC 1 cut(s) 1550
BsmFI GGGAC 6 cut(s) 179, 402, 1804, 2587, 2778, 2885
BsnI GGCC 7 cut(s) 221, 777, 921, 1359, 1558, 2440, 2782
Bso31I GGTCTC 1 cut(s) 1550
BsoBI CYCGRG 2 cut(s) 1547, 2562
Bsp1286I GDGCHC 1 cut(s) 851
Bsp1407I TGTACA 1 cut(s) 2449
Bsp19I CCATGG 1 cut(s) 1142
Bsp68I TCGCGA 1 cut(s) 2910
BspACI CCGC 6 cut(s) 137, 176, 922, 1268, 2768, 2779
BspANI GGCC 7 cut(s) 221, 777, 921, 1359, 1558, 2440, 2782
BspCNI CTCAG 5 cut(s) 439, 713, 811, 1414, 1518
BspDI ATCGAT 1 cut(s) 396
BspFNI CGCG 5 cut(s) 170, 1270, 2779, 2796, 2910
BspHI TCATGA 1 cut(s) 2425
BspMAI CTGCAG 1 cut(s) 2242
BspMI ACCTGC 3 cut(s) 308, 1691, 1802
BspOI GCTAGC 2 cut(s) 743, 2976
BspPI GGATC 5 cut(s) 223, 975, 1528, 2687, 2700
BspQI GCTCTTC 1 cut(s) 1898
BspT107I GGYRCC 4 cut(s) 178, 230, 2126, 2590
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 1550
BsrDI GCAATG 3 cut(s) 1411, 1728, 2610
BsrFI RCCGGY 1 cut(s) 413
BsrGI TGTACA 1 cut(s) 2449
BsrI ACTGG 7 cut(s) 922, 969, 1380, 1474, 2469, 2526, 2971
BssAI RCCGGY 1 cut(s) 413
BssNI GRCGYC 1 cut(s) 2127
BssT1I CCWWGG 7 cut(s) 498, 1142, 1354, 1692, 1810, 2197, 2441
Bst2UI CCWGG 5 cut(s) 74, 1221, 1457, 1518, 1896
Bst6I CTCTTC 2 cut(s) 1898, 2198
BstACI GRCGYC 1 cut(s) 2127
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 2 cut(s) 300, 2225
BstAUI TGTACA 1 cut(s) 2449
BstC8I GCNNGC 5 cut(s) 174, 741, 1958, 2807, 2974
BstDEI CTNAG 5 cut(s) 447, 700, 798, 1422, 1526
BstDSI CCRYGG 1 cut(s) 1142
BstEII GGTNACC 2 cut(s) 348, 1147
BstENI CCTNNNNNAGG 4 cut(s) 699, 1460, 1809, 2336
BstF5I GGATG 5 cut(s) 492, 924, 2014, 2279, 2950
BstFNI CGCG 5 cut(s) 170, 1270, 2779, 2796, 2910
BstH2I RGCGCY 1 cut(s) 2130
BstHHI GCGC 4 cut(s) 172, 1272, 2129, 2995
BstMAI GTCTC 1 cut(s) 1550
BstMWI GCNNNNNNNGC 8 cut(s) 101, 110, 178, 300, 2225, 2237, 2776, 2802
BstNI CCWGG 5 cut(s) 74, 1221, 1457, 1518, 1896
BstNSI RCATGY 1 cut(s) 2809
BstPI GGTNACC 2 cut(s) 348, 1147
BstSCI CCNGG 8 cut(s) 72, 1219, 1455, 1516, 1894, 2561, 2562, 2953
BstSFI CTRYAG 2 cut(s) 277, 2238
BstUI CGCG 5 cut(s) 170, 1270, 2779, 2796, 2910
BstV1I GCAGC 7 cut(s) 303, 1784, 2062, 2215, 2228, 2844, 2970
BstV2I GAAGAC 2 cut(s) 1085, 1127
BstX2I RGATCY 2 cut(s) 967, 2692
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 2 cut(s) 967, 2692
Bsu15I ATCGAT 1 cut(s) 396
BsuI GTATCC 1 cut(s) 1042
BsuRI GGCC 7 cut(s) 221, 777, 921, 1359, 1558, 2440, 2782
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 1142
BtgZI GCGATG 1 cut(s) 2234
BtsCI GGATG 5 cut(s) 492, 924, 2014, 2279, 2950
BtsI GCAGTG 4 cut(s) 99, 217, 563, 2247
BtuMI TCGCGA 1 cut(s) 2910
BveI ACCTGC 3 cut(s) 308, 1691, 1802
Cac8I GCNNGC 5 cut(s) 174, 741, 1958, 2807, 2974
CaiI CAGNNNCTG 1 cut(s) 1940
CciI TCATGA 1 cut(s) 2425
CfoI GCGC 4 cut(s) 172, 1272, 2129, 2995
Cfr10I RCCGGY 1 cut(s) 413
Cfr9I CCCGGG 1 cut(s) 2562
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 2 cut(s) 176, 2785
Csp6I GTAC 2 cut(s) 1383, 2450
CspAI ACCGGT 1 cut(s) 413
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviQI GTAC 2 cut(s) 1383, 2450
DdeI CTNAG 5 cut(s) 447, 700, 798, 1422, 1526
DinI GGCGCC 1 cut(s) 2128
DraI TTTAAA 1 cut(s) 957
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 3 cut(s) 219, 919, 2780
Eam1104I CTCTTC 2 cut(s) 1898, 2198
EarI CTCTTC 2 cut(s) 1898, 2198
Ecl136II GAGCTC 1 cut(s) 849
Eco130I CCWWGG 7 cut(s) 498, 1142, 1354, 1692, 1810, 2197, 2441
Eco24I GRGCYC 1 cut(s) 851
Eco31I GGTCTC 1 cut(s) 1550
Eco32I GATATC 1 cut(s) 1648
Eco47I GGWCC 8 cut(s) 121, 244, 416, 488, 1301, 1791, 1823, 2765
Eco53kI GAGCTC 1 cut(s) 849
Eco57I CTGAAG 2 cut(s) 375, 2172
Eco88I CYCGRG 2 cut(s) 1547, 2562
Eco91I GGTNACC 2 cut(s) 348, 1147
EcoICRI GAGCTC 1 cut(s) 849
EcoNI CCTNNNNNAGG 4 cut(s) 699, 1460, 1809, 2336
EcoO109I RGGNCCY 1 cut(s) 1791
EcoO65I GGTNACC 2 cut(s) 348, 1147
EcoRI GAATTC 2 cut(s) 763, 814
EcoRII CCWGG 5 cut(s) 72, 1219, 1455, 1516, 1894
EcoRV GATATC 1 cut(s) 1648
EcoT14I CCWWGG 7 cut(s) 498, 1142, 1354, 1692, 1810, 2197, 2441
EcoT22I ATGCAT 1 cut(s) 910
EcoT38I GRGCYC 1 cut(s) 851
EgeI GGCGCC 1 cut(s) 2128
EheI GGCGCC 1 cut(s) 2128
ErhI CCWWGG 7 cut(s) 498, 1142, 1354, 1692, 1810, 2197, 2441
FaqI GGGAC 6 cut(s) 179, 402, 1804, 2587, 2778, 2885
FauI CCCGC 1 cut(s) 1275
FbaI TGATCA 2 cut(s) 2335, 2716
FokI GGATG 5 cut(s) 479, 911, 2021, 2286, 2937
FriOI GRGCYC 1 cut(s) 851
FspBI CTAG 6 cut(s) 740, 1074, 1667, 2108, 2258, 2973
GlaI GCGC 4 cut(s) 171, 1271, 2128, 2994
GsaI CCCAGC 2 cut(s) 263, 1364
GsuI CTGGAG 5 cut(s) 555, 1083, 1500, 1878, 2835
HaeII RGCGCY 1 cut(s) 2130
HaeIII GGCC 7 cut(s) 221, 777, 921, 1359, 1558, 2440, 2782
HapII CCGG 4 cut(s) 414, 713, 2563, 2955
HgaI GACGC 2 cut(s) 176, 2785
HhaI GCGC 4 cut(s) 172, 1272, 2129, 2995
Hin1I GRCGYC 1 cut(s) 2127
Hin6I GCGC 4 cut(s) 170, 1270, 2127, 2993
HinP1I GCGC 4 cut(s) 170, 1270, 2127, 2993
HincII GTYRAC 3 cut(s) 453, 995, 1180
HindII GTYRAC 3 cut(s) 453, 995, 1180
HindIII AAGCTT 1 cut(s) 2528
HinfI GANTC 8 cut(s) 672, 825, 1432, 1879, 2206, 2382, 2432, 2656
HpaII CCGG 4 cut(s) 414, 713, 2563, 2955
HphI GGTGA 5 cut(s) 403, 644, 1826, 1930, 2186
Hpy166II GTNNAC 9 cut(s) 244, 453, 623, 995, 1180, 1741, 1826, 2134, 2612
Hpy8I GTNNAC 9 cut(s) 244, 453, 623, 995, 1180, 1741, 1826, 2134, 2612
HpyCH4IV ACGT 1 cut(s) 1743
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 110, 178, 300, 2225, 2237, 2776, 2802
HpyF3I CTNAG 5 cut(s) 447, 700, 798, 1422, 1526
HpySE526I ACGT 1 cut(s) 1743
Hsp92I GRCGYC 1 cut(s) 2127
HspAI GCGC 4 cut(s) 170, 1270, 2127, 2993
KasI GGCGCC 1 cut(s) 2126
Ksp22I TGATCA 2 cut(s) 2335, 2716
LguI GCTCTTC 1 cut(s) 1898
LmnI GCTCC 2 cut(s) 502, 854
Lsp1109I GCAGC 7 cut(s) 303, 1784, 2062, 2215, 2228, 2844, 2970
LweI GCATC 8 cut(s) 692, 933, 1616, 1672, 2198, 2264, 2371, 2476
MaeI CTAG 6 cut(s) 740, 1074, 1667, 2108, 2258, 2973
MaeII ACGT 1 cut(s) 1743
MfeI CAATTG 1 cut(s) 314
MflI RGATCY 2 cut(s) 967, 2692
MhlI GDGCHC 1 cut(s) 851
MluI ACGCGT 1 cut(s) 2794
Mly113I GGCGCC 1 cut(s) 2127
MlyI GAGTC 3 cut(s) 2215, 2441, 2650
MmeI TCCRAC 2 cut(s) 1598, 1924
Mph1103I ATGCAT 1 cut(s) 910
MroXI GAANNNNTTC 5 cut(s) 360, 407, 479, 1730, 2022
MseI TTAA 8 cut(s) 516, 956, 1194, 1712, 1964, 2069, 2091, 3012
MslI CAYNNNNRTG 2 cut(s) 2457, 2840
MspA1I CMGCKG 2 cut(s) 176, 618
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 4 cut(s) 414, 713, 2563, 2955
MspR9I CCNGG 8 cut(s) 74, 1221, 1457, 1518, 1896, 2563, 2564, 2955
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 5 cut(s) 74, 1221, 1457, 1518, 1896
MvnI CGCG 5 cut(s) 170, 1270, 2779, 2796, 2910
MwoI GCNNNNNNNGC 8 cut(s) 101, 110, 178, 300, 2225, 2237, 2776, 2802
NarI GGCGCC 1 cut(s) 2127
NciI CCSGG 3 cut(s) 2563, 2564, 2955
NcoI CCATGG 1 cut(s) 1142
NheI GCTAGC 2 cut(s) 739, 2972
NmuCI GTSAC 5 cut(s) 913, 1004, 1480, 2790, 3025
NruI TCGCGA 1 cut(s) 2910
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 1 cut(s) 2809
PaeI GCATGC 1 cut(s) 2809
PaeR7I CTCGAG 1 cut(s) 1547
PagI TCATGA 1 cut(s) 2425
PaqCI CACCTGC 2 cut(s) 308, 1691
PciSI GCTCTTC 1 cut(s) 1898
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PdmI GAANNNNTTC 5 cut(s) 360, 407, 479, 1730, 2022
PfeI GAWTC 5 cut(s) 672, 825, 1432, 1879, 2382
PflMI CCANNNNNTGG 2 cut(s) 212, 578
PfoI TCCNGGA 3 cut(s) 1219, 1516, 1894
PinAI ACCGGT 1 cut(s) 413
PleI GAGTC 3 cut(s) 2214, 2440, 2650
PluTI GGCGCC 1 cut(s) 2130
PpsI GAGTC 3 cut(s) 2214, 2440, 2650
PpuMI RGGWCCY 1 cut(s) 1791
PshBI ATTAAT 1 cut(s) 1964
PsiI TTATAA 2 cut(s) 1116, 3038
Psp124BI GAGCTC 1 cut(s) 851
Psp5II RGGWCCY 1 cut(s) 1791
Psp6I CCWGG 5 cut(s) 72, 1219, 1455, 1516, 1894
PspEI GGTNACC 2 cut(s) 348, 1147
PspFI CCCAGC 2 cut(s) 259, 1360
PspGI CCWGG 5 cut(s) 72, 1219, 1455, 1516, 1894
PspPPI RGGWCCY 1 cut(s) 1791
PstI CTGCAG 1 cut(s) 2242
PstNI CAGNNNCTG 1 cut(s) 1940
PsuI RGATCY 2 cut(s) 967, 2692
PvuII CAGCTG 1 cut(s) 618
RruI TCGCGA 1 cut(s) 2910
RsaI GTAC 2 cut(s) 1384, 2451
RsaNI GTAC 2 cut(s) 1383, 2450
RseI CAYNNNNRTG 2 cut(s) 2457, 2840
SacI GAGCTC 1 cut(s) 851
SapI GCTCTTC 1 cut(s) 1898
SaqAI TTAA 8 cut(s) 516, 956, 1194, 1712, 1964, 2069, 2091, 3012
SchI GAGTC 3 cut(s) 2215, 2441, 2650
ScrFI CCNGG 8 cut(s) 74, 1221, 1457, 1518, 1896, 2563, 2564, 2955
SduI GDGCHC 1 cut(s) 851
SfaNI GCATC 8 cut(s) 692, 933, 1616, 1672, 2198, 2264, 2371, 2476
SfcI CTRYAG 2 cut(s) 277, 2238
SfoI GGCGCC 1 cut(s) 2128
Sfr274I CTCGAG 1 cut(s) 1547
SinI GGWCC 8 cut(s) 121, 244, 416, 488, 1301, 1791, 1823, 2765
SlaI CTCGAG 1 cut(s) 1547
SmaI CCCGGG 1 cut(s) 2564
SmiI ATTTAAAT 1 cut(s) 957
SmiMI CAYNNNNRTG 2 cut(s) 2457, 2840
SmlI CTYRAG 3 cut(s) 515, 748, 1547
SmoI CTYRAG 3 cut(s) 515, 748, 1547
SphI GCATGC 1 cut(s) 2809
SsiI CCGC 6 cut(s) 137, 176, 922, 1268, 2768, 2779
SspDI GGCGCC 1 cut(s) 2126
SspI AATATT 3 cut(s) 153, 1968, 2476
SspMI CTAG 6 cut(s) 740, 1074, 1667, 2108, 2258, 2973
SstI GAGCTC 1 cut(s) 851
StyD4I CCNGG 8 cut(s) 72, 1219, 1455, 1516, 1894, 2561, 2562, 2953
StyI CCWWGG 7 cut(s) 498, 1142, 1354, 1692, 1810, 2197, 2441
SwaI ATTTAAAT 1 cut(s) 957
TaiI ACGT 1 cut(s) 1746
TaqI TCGA 7 cut(s) 396, 464, 597, 1014, 1548, 2283, 2435
TaqII GACCGA 1 cut(s) 3006
TatI WGTACW 2 cut(s) 1382, 2449
TauI GCSGC 3 cut(s) 140, 924, 2782
TfiI GAWTC 5 cut(s) 672, 825, 1432, 1879, 2382
Tru1I TTAA 8 cut(s) 516, 956, 1194, 1712, 1964, 2069, 2091, 3012
Tru9I TTAA 8 cut(s) 516, 956, 1194, 1712, 1964, 2069, 2091, 3012
TseFI GTSAC 5 cut(s) 913, 1004, 1480, 2790, 3025
TseI GCWGC 7 cut(s) 291, 1797, 2075, 2216, 2228, 2832, 2958
Tsp45I GTSAC 5 cut(s) 913, 1004, 1480, 2790, 3025
TspGWI ACGGA 3 cut(s) 134, 470, 2879
TspMI CCCGGG 1 cut(s) 2562
Van91I CCANNNNNTGG 2 cut(s) 212, 578
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 8 cut(s) 121, 244, 416, 488, 1301, 1791, 1823, 2765
VspI ATTAAT 1 cut(s) 1964
XagI CCTNNNNNAGG 4 cut(s) 699, 1460, 1809, 2336
XapI RAATTY 8 cut(s) 636, 763, 814, 871, 952, 1243, 1764, 2298
XceI RCATGY 1 cut(s) 2809
XhoI CTCGAG 1 cut(s) 1547
XmaI CCCGGG 1 cut(s) 2562
XmnI GAANNNNTTC 5 cut(s) 360, 407, 479, 1730, 2022
XspI CTAG 6 cut(s) 740, 1074, 1667, 2108, 2258, 2973
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.