Prupe.4G180500_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011251
Physical Location & Seq
Reverse (-)
10699239 .. 10703990
4752 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G180500.1

Sequence Viewer

Length: 1056 bp
ATGTTTGGGCTAAGATTTGTGAAACCCCAAGCCCACTACAAGGCAGAAGCATACACTTCTCCTCTCAACCCAGTTGGCCTACGCATTGTGCATAGGGCCATGGCTGCCACCAGTTTCGTAGCAGCGTCACTTGTAAGAAGAGCAGCTGTGGCTTTTGCTCTGTCCCATCCTCTCATAAACAACAAGGTCTCTTACCACAGGACCCTTGTCACCTTTCCTCTCGGTCCTCGCTTGAGTTCTTCAGGAATATGCCACTTAGCTCAAGCTGTAAAGAGGGATGATGATGATTTACTTAAAGGAGTGGTGGACAAAACTGTTATTGAAGAAGTAAAGCACGTTCTTGAGATGGCTAGACGTGCGTCATTAAGAAGAGAAGTTCTCCATACAAATTTTCTCACCCCTCCAGTGTTGAAGGAGTCGATGCTAGCTTTGGAAAAGCTAGCTGATTTGAAAGCAGTTGCTCAGGGTGGATACCCACAGGCTGAGCGGTGCCGAATCTCCGTTGGACATCCAGAACGTTTGACAAGTGATCCTGATGTTATTGTTGCATTGAGTATCACGGGAAACTTTGGGTTTCAACCTTGTTCTCATGGTGACTTCCTAGGCGCAATTCTTGGTACAGGGATTGCTAGGGAGAAGTTTGGAGATGTTATTTTTCAGGGGGAGAAGGGGGCTCAAGTCATTGTTGTTCCAGACCTTGCTGACTATCTTATATCATCACTCGACAAGGTTGGCAACGTTCCTGTATCTCTTACTAAGATACCACTGATTGCTCTTGATTACGAACAACCAAGAACTAAGTCATTTAAAGCCATAGAATTATCACTGAGGATTGATGCTATAGCTAGTGCAGGATTTAAGATTTCACGGTCAAAACTAGTTGATCTGATCCGTGACGGGGATGTGCGCCTCAACTGGACCCCTGTTACCAAAAATGGAGCTACACTCAAGACTGGTGATATTGTATCAGTTAGAGGTAAAGGAAGACTGAAGATTGGAGAAATTAACTCTACGAAGAAGGGGAAGTTTGCAGTTGAGCTCATTCGTTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S4

Protein Analysis

352

Amino Acids

38.29

Weight (kDa)

9.74

Isoelectric Point (pI)

21.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53120 AT1G53120
fragaria_vesca FvH4_3g19840
malus_domestica MD11G1248800.v1.1 MD11G1252400.v1.1
prunus_persica Prupe.4G180500_v2.0.a1
pyrus_communis pycom11g22390
rosa_chinensis RchiOBHm_Chr5g0033281
rosa_laevigata RLG00000033463
rosa_multiflora Rmu_sc0009715.1_g000003
rosa_roxburghii Rroxscaffold_1G00015440 Rroxscaffold_1G00046700
rosa_rugosa Rorug05G0139000 Rorug05G0139100 Rorug05G0250800
rosa_samantha Rh5AG230500 Rh5BG231400 Rh5CG259400 Rh5DG236600
rosa_wichuraiana Rw5G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 487
AciI CCGC 1 cut(s) 487
AclI AACGTT 2 cut(s) 517, 738
AclWI GGATC 2 cut(s) 524, 883
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 2 cut(s) 225, 1010
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 2 cut(s) 40, 898
AgsI TTSAA 4 cut(s) 323, 412, 451, 578
AhlI ACTAGT 1 cut(s) 877
AjiI CACGTC 1 cut(s) 356
AluBI AGCT 9 cut(s) 146, 260, 266, 428, 439, 443, 845, 941, 1039
AluI AGCT 9 cut(s) 146, 260, 266, 428, 439, 443, 845, 941, 1039
Alw21I GWGCWC 1 cut(s) 1041
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 2 cut(s) 524, 883
AoxI GGCC 2 cut(s) 76, 96
ApeKI GCWGC 3 cut(s) 104, 122, 143
ApoI RAATTY 1 cut(s) 388
AspA2I CCTAGG 1 cut(s) 601
AspLEI GCGC 2 cut(s) 608, 909
AspS9I GGNCC 4 cut(s) 96, 201, 224, 918
AsuHPI GGTGA 4 cut(s) 202, 388, 605, 968
AsuNHI GCTAGC 2 cut(s) 424, 439
AvaII GGWCC 3 cut(s) 201, 224, 918
AvrII CCTAGG 1 cut(s) 601
BanI GGYRCC 1 cut(s) 489
BanII GRGCYC 2 cut(s) 676, 1041
BbsI GAAGAC 1 cut(s) 991
Bbv12I GWGCWC 1 cut(s) 1041
BbvI GCAGC 3 cut(s) 91, 134, 155
BccI CCATC 2 cut(s) 174, 340
BciVI GTATCC 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 193
BcuI ACTAGT 1 cut(s) 877
BfaI CTAG 7 cut(s) 351, 425, 440, 602, 630, 846, 878
BfmI CTRYAG 1 cut(s) 840
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 3 cut(s) 105, 123, 144
BlnI CCTAGG 1 cut(s) 601
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 3 cut(s) 106, 124, 145
Bme18I GGWCC 3 cut(s) 201, 224, 918
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 4 cut(s) 96, 201, 224, 918
BmiI GGNNCC 3 cut(s) 203, 491, 920
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 2 cut(s) 411, 826
BmtI GCTAGC 2 cut(s) 428, 443
BmuI ACTGGG 1 cut(s) 65
BoxI GACNNNNGTC 2 cut(s) 206, 358
BpiI GAAGAC 1 cut(s) 991
BplI GAGNNNNNCTC 4 cut(s) 363, 395, 930, 962
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 483
BpuEI CTTGAG 5 cut(s) 246, 253, 362, 660, 932
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 99, 601
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 898
Bse1I ACTGG 5 cut(s) 71, 111, 404, 920, 958
BseDI CCNNGG 2 cut(s) 99, 601
BseGI GGATG 4 cut(s) 166, 283, 508, 907
BseLI CCNNNNNNNGG 2 cut(s) 40, 898
BseMII CTCAG 3 cut(s) 474, 476, 818
BseNI ACTGG 5 cut(s) 71, 111, 404, 920, 958
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 3 cut(s) 91, 134, 155
BsgI GTGCAG 1 cut(s) 870
BshFI GGCC 2 cut(s) 78, 98
BshNI GGYRCC 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 1041
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 40, 898
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 2 cut(s) 78, 98
Bso31I GGTCTC 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 676, 1041
Bsp143I GATC 3 cut(s) 529, 883, 888
Bsp1720I GCTNAGC 1 cut(s) 483
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 487
BspANI GGCC 2 cut(s) 78, 98
BspCNI CTCAG 3 cut(s) 475, 475, 819
BspLI GGNNCC 3 cut(s) 203, 491, 920
BspOI GCTAGC 2 cut(s) 428, 443
BspPI GGATC 2 cut(s) 524, 883
BspQI GCTCTTC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 487
BsrI ACTGG 5 cut(s) 71, 111, 404, 920, 958
BssECI CCNNGG 2 cut(s) 99, 601
BssMI GATC 3 cut(s) 529, 883, 888
BssT1I CCWWGG 2 cut(s) 99, 601
Bst4CI ACNGT 2 cut(s) 316, 870
Bst6I CTCTTC 2 cut(s) 133, 364
BstC8I GCNNGC 2 cut(s) 426, 441
BstDEI CTNAG 7 cut(s) 11, 256, 462, 483, 756, 798, 827
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 4 cut(s) 166, 283, 508, 907
BstHHI GCGC 2 cut(s) 608, 909
BstKTI GATC 3 cut(s) 532, 886, 891
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 3 cut(s) 529, 883, 888
BstMWI GCNNNNNNNGC 3 cut(s) 104, 149, 356
BstPAI GACNNNNGTC 2 cut(s) 206, 358
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 3 cut(s) 91, 134, 155
BstV2I GAAGAC 1 cut(s) 991
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 2 cut(s) 78, 98
BtgI CCRYGG 1 cut(s) 99
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 4 cut(s) 166, 283, 508, 907
BtsIMutI CAGTG 3 cut(s) 411, 764, 824
Cac8I GCNNGC 2 cut(s) 426, 441
CfoI GCGC 2 cut(s) 608, 909
Cfr13I GGNCC 4 cut(s) 96, 201, 224, 918
CseI GACGC 2 cut(s) 114, 348
Csp6I GTAC 1 cut(s) 618
CviAII CATG 2 cut(s) 100, 590
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 7 cut(s) 11, 256, 462, 483, 756, 798, 827
DpnI GATC 3 cut(s) 531, 885, 890
DpnII GATC 3 cut(s) 529, 883, 888
DraI TTTAAA 1 cut(s) 808
Eam1104I CTCTTC 2 cut(s) 133, 364
EarI CTCTTC 2 cut(s) 133, 364
Ecl136II GAGCTC 1 cut(s) 1039
Eco130I CCWWGG 2 cut(s) 99, 601
Eco24I GRGCYC 2 cut(s) 676, 1041
Eco31I GGTCTC 1 cut(s) 193
Eco47I GGWCC 3 cut(s) 201, 224, 918
Eco53kI GAGCTC 1 cut(s) 1039
Eco57I CTGAAG 2 cut(s) 225, 1010
EcoICRI GAGCTC 1 cut(s) 1039
EcoO109I RGGNCCY 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 99, 601
EcoT38I GRGCYC 2 cut(s) 676, 1041
ErhI CCWWGG 2 cut(s) 99, 601
FaeI CATG 2 cut(s) 103, 593
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 99, 589
Fnu4HI GCNGC 3 cut(s) 105, 123, 144
FokI GGATG 4 cut(s) 153, 290, 495, 914
FriOI GRGCYC 2 cut(s) 676, 1041
Fsp4HI GCNGC 3 cut(s) 105, 123, 144
FspBI CTAG 7 cut(s) 351, 425, 440, 602, 630, 846, 878
GlaI GCGC 2 cut(s) 607, 908
GluI GCNGC 3 cut(s) 105, 123, 144
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 2 cut(s) 78, 98
HgaI GACGC 2 cut(s) 114, 348
HhaI GCGC 2 cut(s) 608, 909
Hin1II CATG 2 cut(s) 103, 593
Hin6I GCGC 2 cut(s) 606, 907
HinP1I GCGC 2 cut(s) 606, 907
HinfI GANTC 2 cut(s) 416, 495
HphI GGTGA 4 cut(s) 202, 388, 605, 968
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 888
Hpy188III TCNNGA 7 cut(s) 243, 341, 512, 533, 692, 776, 949
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 406, 661, 1012
HpyCH4III ACNGT 2 cut(s) 316, 870
HpyCH4IV ACGT 4 cut(s) 336, 355, 517, 738
HpyCH4V TGCA 4 cut(s) 91, 548, 851, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 149, 356
HpyF3I CTNAG 7 cut(s) 11, 256, 462, 483, 756, 798, 827
HpySE526I ACGT 4 cut(s) 336, 355, 517, 738
Hsp92II CATG 2 cut(s) 103, 593
HspAI GCGC 2 cut(s) 606, 907
Kzo9I GATC 3 cut(s) 529, 883, 888
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 938
Lsp1109I GCAGC 3 cut(s) 91, 134, 155
LweI GCATC 2 cut(s) 411, 826
MaeI CTAG 7 cut(s) 351, 425, 440, 602, 630, 846, 878
MaeII ACGT 4 cut(s) 336, 355, 517, 738
MaeIII GTNAC 5 cut(s) 126, 208, 593, 893, 925
MalI GATC 3 cut(s) 531, 885, 890
MbiI CCGCTC 1 cut(s) 487
MboI GATC 3 cut(s) 529, 883, 888
MboII GAAGA 7 cut(s) 150, 231, 335, 381, 996, 1003, 1027
MhlI GDGCHC 2 cut(s) 676, 1041
MluCI AATT 4 cut(s) 388, 609, 818, 1002
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 9 cut(s) 72, 180, 228, 237, 267, 411, 822, 920, 968
MseI TTAA 5 cut(s) 294, 365, 807, 858, 1005
MspA1I CMGCKG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 104, 149, 356
NcoI CCATGG 1 cut(s) 99
NdeII GATC 3 cut(s) 529, 883, 888
NheI GCTAGC 2 cut(s) 424, 439
NlaIII CATG 2 cut(s) 103, 593
NlaIV GGNNCC 3 cut(s) 203, 491, 920
NmuCI GTSAC 4 cut(s) 126, 208, 593, 893
PciSI GCTCTTC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 495
PkrI GCNGC 3 cut(s) 106, 124, 145
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PpuMI RGGWCCY 1 cut(s) 201
PshAI GACNNNNGTC 2 cut(s) 206, 358
Psp124BI GAGCTC 1 cut(s) 1041
Psp1406I AACGTT 2 cut(s) 517, 738
Psp5II RGGWCCY 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 203, 491, 920
PspPI GGNCC 4 cut(s) 96, 201, 224, 918
PspPPI RGGWCCY 1 cut(s) 201
PsrI GAACNNNNNNTAC 2 cut(s) 321, 353
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
SacI GAGCTC 1 cut(s) 1041
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 5 cut(s) 294, 365, 807, 858, 1005
SatI GCNGC 3 cut(s) 105, 123, 144
Sau3AI GATC 3 cut(s) 529, 883, 888
Sau96I GGNCC 4 cut(s) 96, 201, 224, 918
SchI GAGTC 1 cut(s) 425
SduI GDGCHC 2 cut(s) 676, 1041
SfaNI GCATC 2 cut(s) 411, 826
SfcI CTRYAG 1 cut(s) 840
SinI GGWCC 3 cut(s) 201, 224, 918
SmlI CTYRAG 5 cut(s) 232, 261, 341, 675, 947
SmoI CTYRAG 5 cut(s) 232, 261, 341, 675, 947
SpeI ACTAGT 1 cut(s) 877
Sse9I AATT 4 cut(s) 388, 609, 818, 1002
SsiI CCGC 1 cut(s) 487
SspMI CTAG 7 cut(s) 351, 425, 440, 602, 630, 846, 878
SstI GAGCTC 1 cut(s) 1041
StyI CCWWGG 2 cut(s) 99, 601
TaaI ACNGT 2 cut(s) 316, 870
TaiI ACGT 4 cut(s) 339, 358, 520, 741
TaqI TCGA 2 cut(s) 419, 723
TaqII GACCGA 1 cut(s) 212
TasI AATT 4 cut(s) 388, 609, 818, 1002
TfiI GAWTC 1 cut(s) 495
Tru1I TTAA 5 cut(s) 294, 365, 807, 858, 1005
Tru9I TTAA 5 cut(s) 294, 365, 807, 858, 1005
TscAI CASTG 3 cut(s) 411, 771, 831
TseFI GTSAC 4 cut(s) 126, 208, 593, 893
TseI GCWGC 3 cut(s) 104, 122, 143
Tsp45I GTSAC 4 cut(s) 126, 208, 593, 893
TspGWI ACGGA 2 cut(s) 490, 881
TspRI CASTG 3 cut(s) 411, 771, 831
VpaK11BI GGWCC 3 cut(s) 201, 224, 918
XapI RAATTY 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 601
XspI CTAG 7 cut(s) 351, 425, 440, 602, 630, 846, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.